EY674884

Overview
NameEY674884
Unique NameEY674884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1029
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674884 vs. ExPASy Swiss-Prot
Match: GL36_ORYSJ (Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.020e-18
Identity = 53/139 (38.13%), Postives = 79/139 (56.83%), Query Frame = 1
Query:  103 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAA-VTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISS--SANTVYVKTL*KGDIMIFPQGLLHFPVNSG 507
            + DFCVADL    +  G+ C  PA    D+F+FS  +   G+  +  N + VT   VA++P VN LG+S+ R+D A GG  P H HP A+E+ +V+ G +  G I +  + N  Y K +  G+  + P+GL+HF  N G
Sbjct:   34 LQDFCVADLDSKVTVNGHAC-KPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVG 171          
BLAST of EY674884 vs. ExPASy Swiss-Prot
Match: GL34_ORYSJ (Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.446e-18
Identity = 53/139 (38.13%), Postives = 78/139 (56.12%), Query Frame = 1
Query:  103 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAA-VTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISS--SANTVYVKTL*KGDIMIFPQGLLHFPVNSG 507
            + DFCVADL    +  G+ C  PA    D+F+FS  +   G+  +  N + VT   VA++P VN LG+S+ R+D A GG  P H HP A+E+ +V+ G +  G I +    N  Y K +  G+  + P+GL+HF  N G
Sbjct:   34 LQDFCVADLDSKVTVNGHAC-KPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDMGNRYYSKVVRAGETFVIPRGLMHFQFNVG 171          
BLAST of EY674884 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.310e-17
Identity = 52/139 (37.41%), Postives = 75/139 (53.96%), Query Frame = 1
Query:  109 DFCVADLKLSDSPA-----GYPCVPPAMVTADDFVFSGLGVAGNTTSII---NAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTL*KGDIMIFPQGLLHFPVN 501
            D+CVAD   + +       G  C+ PA+  AD F  S L  A N  + +   NA +T    A  P  N  GL++AR+DLA GG+ P H+HP ASE  LV+ G +  GF  +S   +Y + L  G+  +FP+ ++HF  N
Sbjct:   29 DYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSP-AASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADTSYR-LYTQLLRAGEAFVFPRAMVHFLYN 165          
BLAST of EY674884 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.710e-17
Identity = 49/116 (42.24%), Postives = 70/116 (60.34%), Query Frame = 1
Query:  169 PAMVTADDFVFSGLGVAGNTTSIINA---AVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTL*KGDIMIFPQGLLHFPVNSG 507
            P  +T D F F+G     NT+S        VT A +A+FPA+NG  +S A L      V P HTHP ++E+LLVV G ++ GFI ++ N +Y + L  GD+ +FP+G++HF  NSG
Sbjct:   42 PMNITGDFFTFTGFRKVFNTSSAPEPNSFTVTKATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSVGFIDTT-NKLYTQDLAAGDMFVFPKGMVHFQFNSG 156          
BLAST of EY674884 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.470e-16
Identity = 50/139 (35.97%), Postives = 73/139 (52.52%), Query Frame = 1
Query:  103 VNDFCVADLKLSDSPA---GYPCVPPAMVTADDFVFSGLGVAGNTTS---IINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTL*KGDIMIFPQGLLHFPVN 501
            + D+CV+    S       G  C  P   +  DF  S L   GNT +   +IN  VT    A  P +N +GL++ARLD    GV+P H HP ASE+ + + G +  GF+ +S   V+ + L  G+  +FP+GL+HF  N
Sbjct:   23 LQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTTT--ANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDTSGR-VFTQELHPGETFVFPKGLIHFLYN 158          
BLAST of EY674884 vs. ExPASy Swiss-Prot
Match: GL91_ORYSJ (Germin-like protein 9-1 OS=Oryza sativa subsp. japonica GN=Os09g0568500 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.566e-15
Identity = 46/114 (40.35%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  169 PAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSAN-TVYVKTL*KGDIMIFPQGLLHFPVNSG 507
            P+ +    F +  L V GN+       VT A  A+FPA+ G  +S A L    G V P H HP ASE+L+VV G +  G + ++ N TVY +TL  GD+ +FP+G++HF  N+G
Sbjct:   42 PSGIDGAFFTYKNL-VTGNSGDPAKLTVTKATHAEFPALLGQSVSYAALVFGAGTVNPPHIHPRASELLVVVQGPLLVGLVDAARNGTVYTQTLQTGDMFVFPKGMVHFQFNNG 154          
BLAST of EY674884 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.312e-14
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 1
Query:  178 VTADDFVFSGLGVAGNTTSI--------INAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTL*KGDIMIFPQGLLHFPVNSG 507
            +T D F F+G     N  S+         N  VT A +A+FPA+NG  +S A L      + P HTHP ++E+LL+V G ++ GF+ ++ N +Y + L  GD+ +FP+G++HF  NSG
Sbjct:   43 ITGDFFTFTGFR---NPLSMNMSMPMPNANFTVTKATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFVDTT-NKLYTQDLAAGDMFVFPKGMVHFQFNSG 156          
The following BLAST results are available for this feature:
BLAST of EY674884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL36_ORYSJ2.020e-1838.13Germin-like protein 3-6 OS=Oryza sativa subsp. jap... [more]
GL34_ORYSJ3.446e-1838.13Putative germin-like protein 3-4 OS=Oryza sativa s... [more]
GL31_ORYSJ1.310e-1737.41Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GL92_ORYSJ1.710e-1742.24Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
GL11_ARATH2.470e-1635.97Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
GL91_ORYSJ3.566e-1540.35Germin-like protein 9-1 OS=Oryza sativa subsp. jap... [more]
GL93_ORYSJ2.312e-1438.14Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-F10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674884 ID=EY674884; Name=EY674884; organism=Citrus sinensis; type=EST; length=1029bp
GGACCGGGGTCCGGGATTTCCCGGGGTCGACCCACGCGTCCGAAAATGCT
TCACATTCTCTTCTTCTTCCTTGCTTTCGTATCCTCTTCCTCCAATGCTA
TGGTTAACGACTTCTGCGTCGCTGACCTAAAGCTGTCGGATAGTCCCGCC
GGCTATCCTTGCGTGCCCCCCGCTATGGTTACCGCTGACGACTTCGTATT
TTCGGGCCTCGGCGTGGCCGGAAACACCACGAGCATTATCAACGCGGCAG
TGACACCTGCATTTGTAGCTCAATTTCCGGCCGTGAATGGGCTCGGACTC
TCCTTGGCACGCCTAGATCTTGCAAAGGGTGGCGTAATCCCAATCCACAC
TCATCCAGCTGCTTCCGAAATCCTTCTTGTTGTGCATGGCTGCATAACTG
CCGGGTTCATTTCCTCTTCAGCTAACACTGTTTACGTAAAGACGCTTTAA
AAGGGAGATATCATGATCTTTCCACAAGGGTTGTTGCATTTTCCAGTAAA
TTCCGGGTGCGGACGGAGCCCTCCGTTTTGTTACCTTCAACAGCCCGAAT
CCTGGACTCCAAATCACCGATTTCCCCTTATTTTGCTAACAATTGTTCTT
CCCAATTGGGTGGAACCAGACCACTTTTCCTGGACAAGGCCTACGGGGAA
AGAGGGCTTCAAGGGTTATCCCCTGGGTGGCACCCGGCCTAGGCCTTAAT
TTAATTACCCACTTTCTTTCCTTTTGGAGTTTTTGAAGTTTTTTATAATT
TTTCTTTTTATTTTGCCAAAGGGTTTTTTTTATTGTTGGGGAATTCCCAA
GAATTAAATATTTTTCCCTGTGTTCCCCCCCCTTTCCCCCCCTATTCTTT
TTTTTCTCTTGACGAAAAAAAAAAAAAATTTTCTCTCCCCCTTTTTTTAC
AAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAGGGGGGGGGGGCGCCCCGC
CCTTCCTCTAAAAAGGGAGAGATCCCCTACAAGGGCGACTTTTTCACCGC
AGATCCCCGCCTGTGGGGGGGGGTCTAGT
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