EY674878

Overview
NameEY674878
Unique NameEY674878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1014
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC2_LOTJA (Rac-like GTP-binding protein RAC2 OS=Lotus japonicus GN=RAC2 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.162e-66
Identity = 102/117 (87.18%), Postives = 112/117 (95.73%), Query Frame = 3
Query:   24 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G+TVNLGLWDTAGQEDYNRLRPLSYRGAD+F+LAFSL+SRASYEN+ KKWIPEL+HY+P VP+VLVGTKLDL
Sbjct:    6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKLDL 122          

HSP 2 Score: 53.1434 bits (126), Expect = 4.162e-66
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 1
Query:  376 REDKHYLADHPRLVPVTTAQGEELRKPIGGFLLP*IASRKTSAEMEIQFFDAAIREFNKPP 558
            RED+ YL DHP   P+TTAQGEEL+K IG  +     S KT   ++   FDAAI+   +PP
Sbjct:  123 REDRQYLIDHPGATPITTAQGEELKKAIGAAVYL-ECSSKTQQNVK-AVFDAAIKVVLQPP 181          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC2_ARATH (Rac-like GTP-binding protein ARAC2 OS=Arabidopsis thaliana GN=ARAC2 PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 5.915e-65
Identity = 100/117 (85.47%), Postives = 113/117 (96.58%), Query Frame = 3
Query:   24 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G+TVNLGLWDTAGQEDYNRLRPLSYRGAD+F+LAFSL+S+ASYEN+ KKW+PEL+HY+PG+P+VLVGTKLDL
Sbjct:    6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDL 122          

HSP 2 Score: 48.1358 bits (113), Expect = 5.915e-65
Identity = 29/61 (47.54%), Postives = 35/61 (57.38%), Query Frame = 1
Query:  376 REDKHYLADHPRLVPVTTAQGEELRKPIGGFLLP*IASRKTSAEMEIQFFDAAIREFNKPP 558
            R+DK +L DHP    +TTAQGEELRK IG        S KT   ++   FD AIR   +PP
Sbjct:  123 RDDKQFLKDHPGAASITTAQGEELRKMIGAVRYL-ECSSKTQQNVK-AVFDTAIRVALRPP 181          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC2_ORYSJ (Rac-like GTP-binding protein 2 OS=Oryza sativa subsp. japonica GN=RAC2 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.228e-64
Identity = 105/122 (86.07%), Postives = 113/122 (92.62%), Query Frame = 3
Query:    9 SSAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            S A  FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV  +G  VNLGLWDTAGQEDY+RLRPLSYRGADIFVLAFSL+SRASYENVLKKW+PEL+ ++P VP+VLVGTKLDL
Sbjct:    2 SGATKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 123          

HSP 2 Score: 46.2098 bits (108), Expect = 2.228e-64
Identity = 28/61 (45.90%), Postives = 35/61 (57.38%), Query Frame = 1
Query:  376 REDKHYLADHPRLVPVTTAQGEELRKPIGGFLLP*IASRKTSAEMEIQFFDAAIREFNKPP 558
            R+ + YLADHP    +TTAQGEELRK IG        S KT   ++   FD AI+   +PP
Sbjct:  124 RDHRSYLADHPAASAITTAQGEELRKQIGAAAYI-ECSSKTQQNIK-AVFDTAIKVVLQPP 182          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC7_ORYSJ (Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 3.793e-64
Identity = 101/117 (86.32%), Postives = 111/117 (94.87%), Query Frame = 3
Query:   24 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G TVNLGLWDTAGQEDYNRLRPLSYRGAD+F+LAFSL+S+ASYEN+ KKWIPEL+HY+P VP+VLVGTKLDL
Sbjct:    6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWIPELRHYAPNVPIVLVGTKLDL 122          

HSP 2 Score: 46.9802 bits (110), Expect = 3.793e-64
Identity = 27/61 (44.26%), Postives = 36/61 (59.02%), Query Frame = 1
Query:  376 REDKHYLADHPRLVPVTTAQGEELRKPIGGFLLP*IASRKTSAEMEIQFFDAAIREFNKPP 558
            REDK +  DHP L P++TAQGEEL++ IG        S KT   ++   FD+AI+    PP
Sbjct:  123 REDKQFFLDHPGLAPISTAQGEELKRMIGAAAYI-ECSSKTQQNVK-SVFDSAIKVVLCPP 181          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC13_GOSHI (Rac-like GTP-binding protein RAC13 OS=Gossypium hirsutum GN=RAC13 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 6.450e-64
Identity = 101/117 (86.32%), Postives = 111/117 (94.87%), Query Frame = 3
Query:   24 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G+TVNLGLWDTAGQEDYNRLRPLSYRGAD+F+LAFSL+S+ASYEN+ KKWIPEL+HY+  VPVVLVGTKLDL
Sbjct:    6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIYKKWIPELRHYAHNVPVVLVGTKLDL 122          

HSP 2 Score: 48.1358 bits (113), Expect = 6.450e-64
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 1
Query:  376 REDKHYLADHPRLVPVTTAQGEELRKPIGGFLLP*IASRKTSAEMEIQFFDAAIREFNKPP 558
            R+DK +L DHP   P++T+QGEEL+K IG        S KT   ++   FDAAI+   +PP
Sbjct:  123 RDDKQFLIDHPGATPISTSQGEELKKMIGAVTYI-ECSSKTQQNVK-AVFDAAIKVALRPP 181          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC1_ORYSJ (Rac-like GTP-binding protein 1 OS=Oryza sativa subsp. japonica GN=RAC1 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 8.400e-64
Identity = 102/123 (82.93%), Postives = 115/123 (93.50%), Query Frame = 3
Query:    6 ASSAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            A++A  FIKCVTVGDGAVGKTCMLICYT NKFPTDYIPTVFDNFSANV  +G+ VNLGLWDTAGQEDY+RLRPLSYRGAD+F+L+FSL+SRASYENV KKW+PEL+ ++PGVPVVLVGTKLDL
Sbjct:    4 AAAATRFIKCVTVGDGAVGKTCMLICYTCNKFPTDYIPTVFDNFSANVSVDGSVVNLGLWDTAGQEDYSRLRPLSYRGADVFILSFSLISRASYENVQKKWMPELRRFAPGVPVVLVGTKLDL 126          

HSP 2 Score: 46.2098 bits (108), Expect = 8.400e-64
Identity = 29/61 (47.54%), Postives = 35/61 (57.38%), Query Frame = 1
Query:  376 REDKHYLADHPRLVPVTTAQGEELRKPIGGFLLP*IASRKTSAEMEIQFFDAAIREFNKPP 558
            RED+ YLADHP    +TT QGEELRK IG        S KT   ++   FD AI+   +PP
Sbjct:  127 REDRAYLADHPASSIITTEQGEELRKLIGAVAYI-ECSSKTQRNIK-AVFDTAIKVVLQPP 185          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC9_GOSHI (Rac-like GTP-binding protein RAC9 OS=Gossypium hirsutum GN=RAC9 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 8.410e-64
Identity = 103/117 (88.03%), Postives = 112/117 (95.73%), Query Frame = 3
Query:   24 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G+TVNLGLWDTAGQEDYNRLRPLSYRGAD+F+LAFSL+SRASYENV KKWIPEL+HY+P VP+VLVGTKLDL
Sbjct:    6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENVHKKWIPELRHYAPNVPIVLVGTKLDL 122          

HSP 2 Score: 43.8986 bits (102), Expect = 8.410e-64
Identity = 25/61 (40.98%), Postives = 37/61 (60.66%), Query Frame = 1
Query:  376 REDKHYLADHPRLVPVTTAQGEELRKPIGGFLLP*IASRKTSAEMEIQFFDAAIREFNKPP 558
            R+DK +L+D+P  + +TT+QGEEL+K IG        S KT   ++   FD AI+   +PP
Sbjct:  123 RDDKQFLSDNPGAISITTSQGEELKKMIGAVTYI-ECSSKTQQNVK-AVFDVAIKIALRPP 181          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC7_ARATH (Rac-like GTP-binding protein ARAC7 OS=Arabidopsis thaliana GN=ARAC7 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 1.557e-62
Identity = 104/121 (85.95%), Postives = 113/121 (93.39%), Query Frame = 3
Query:   12 SAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            SA  FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV  +G  VNLGLWDTAGQEDY+RLRPLSYRGADIFVLAFSL+S+ASYENVLKKW+PEL+ ++P VP+VLVGTKLDL
Sbjct:    2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 122          

HSP 2 Score: 40.817 bits (94), Expect = 1.557e-62
Identity = 27/61 (44.26%), Postives = 35/61 (57.38%), Query Frame = 1
Query:  376 REDKHYLADHPRLVPVTTAQGEELRKPIGGFLLP*IASRKTSAEMEIQFFDAAIREFNKPP 558
            R+DK YLADH  ++  T+ QGEELRK IG        S KT   ++   FD AI+   +PP
Sbjct:  123 RDDKGYLADHTNVI--TSTQGEELRKQIGAAAYI-ECSSKTQQNVK-AVFDTAIKVVLQPP 179          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.488e-58
Identity = 123/196 (62.76%), Postives = 140/196 (71.43%), Query Frame = 3
Query:   12 SAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLSRG*ALFG*SSKIGACDHCTRRGTPQTDW-WLPITLNCIS*NLS*NGNPVF*CCHQGI*QTPRTNQKEKKEKTTR 596
            SA  FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G TVNLGLWDTAGQEDYNRLRPLSYRGAD+F+LAFSL+S+ASYENV KKWIPEL+HY+PGVP++LVGTKLDL      F      GA    T +G         PI + C S     N   VF    + + Q P+  QK+KK+   R
Sbjct:    2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTNQGEELKKLIGSPIYIECSS-KTQQNVKAVFDAAIKVVLQPPK--QKKKKKNKNR 192          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 4.330e-58
Identity = 119/193 (61.66%), Postives = 139/193 (72.02%), Query Frame = 3
Query:   12 SAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLSRG*ALFG*SSKIGACDHCTRRGTP-QTDWWLPITLNCIS*NLS*NGNPVF*CCHQGI*QTPRTNQKEKKEK 587
            SA  FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G TVNLGLWDTAGQEDYNRLRPLSYRGAD+F+LAFSL+S+ASYENV KKWIPEL+HY+PGVP++LVGTKLDL      F      GA    T +G   +     P  + C S     N   VF    + + Q P+  +K+K ++
Sbjct:    2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--VDHPGAVPITTAQGEELRKQIGAPYYIECSS-KTQLNVKGVFDAAIKVVLQPPKAKKKKKAQR 191          
The following BLAST results are available for this feature:
BLAST of EY674878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC2_LOTJA4.162e-6687.18Rac-like GTP-binding protein RAC2 OS=Lotus japonic... [more]
RAC2_ARATH5.915e-6585.47Rac-like GTP-binding protein ARAC2 OS=Arabidopsis ... [more]
RAC2_ORYSJ2.228e-6486.07Rac-like GTP-binding protein 2 OS=Oryza sativa sub... [more]
RAC7_ORYSJ3.793e-6486.32Rac-like GTP-binding protein 7 OS=Oryza sativa sub... [more]
RAC13_GOSHI6.450e-6486.32Rac-like GTP-binding protein RAC13 OS=Gossypium hi... [more]
RAC1_ORYSJ8.400e-6482.93Rac-like GTP-binding protein 1 OS=Oryza sativa sub... [more]
RAC9_GOSHI8.410e-6488.03Rac-like GTP-binding protein RAC9 OS=Gossypium hir... [more]
RAC7_ARATH1.557e-6285.95Rac-like GTP-binding protein ARAC7 OS=Arabidopsis ... [more]
RAC5_ARATH1.488e-5862.76Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ... [more]
RAC6_ORYSJ4.330e-5861.66Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-F04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674878 ID=EY674878; Name=EY674878; organism=Citrus sinensis; type=EST; length=1014bp
CAATGGCTTCTAGTGCTCCTTGGTTCATCAAGTGTGTAACAGTTGGTGAT
GGAGCTGTTGGCAAAACTTGCATGCTTATTTGCTACACAAGTAACAAGTT
TCCTACTGATTATATACCAACGGTGTTCGACAACTTCAGTGCAAATGTGG
TAGCTGAAGGCACTACTGTCAACTTAGGCCTCTGGGACACAGCTGGGCAA
GAGGATTACAATAGATTAAGGCCTTTGAGCTACAGAGGGGCAGACATTTT
TGTCTTAGCTTTCTCATTAGTCAGTCGAGCCAGCTATGAAAACGTTCTGA
AAAAGTGGATCCCTGAACTTCAGCATTACTCTCCCGGAGTACCAGTTGTA
TTGGTTGGAACCAAATTGGATCTGTCGAGAGGATAAGCATTATTTGGCTG
ATCATCCAAGATTGGTGCCTGTGACCACTGCACAAGGAGAGGAACTCCGC
AAACCGATTGGTGGCTTCCTATTACCTTGAATTGCATCTCGTAAAACCTC
AGCTGAAATGGAAATCCAGTTTTTTGATGCTGCCATCAGGGAATTTAACA
AACCCCCCGCACAAACCAAAAGGAAAAGAAAGAAAAAACAACGAGGGATC
CCTAATAAATGTCTTTTTGGGGGAAGGAACCCCTGAAAAATTTTAAATAA
AAACCCTTCCACCACAAAAAAAATGAAGGAAATGGAAGAATCCCCCGGGT
GGGGTTTTTCCAAAGATACCTATAAGCGGGTTAAAAAAAGGAAACAAGGA
TGGTTTATATTTTTCAAGGGTAGGGTTTTTAGAGGGGGGGTTTGGAACCA
AAATATTCCCTTCTTGAATTGTTCAACCCCTTCTTTTATGGGCTGCTTTT
ATTTTTTCTCTCTCCTTAAGTTCTTAATAAAAAAAAAAAAATATCACCCC
CGCTTACCCACATACTTCGAAAAACCTTAAAAGAATTAATTATGATGGAG
GATGAGTGTATTTCTTTTTTTATTCTTTATTCTAAACAATCCTCCCCCCT
CTTTTCCCGTGATT
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