EY674878

Overview
NameEY674878
Unique NameEY674878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1014
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC1_BETVU (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 7.387e-58
Identity = 120/191 (62.83%), Postives = 136/191 (71.20%), Query Frame = 3
Query:   12 SAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLSRG*ALFG*SSKIGACDHCTRRGTPQTDW-WLPITLNCIS*NLS*NGNPVF*CCHQGI*QTPRTNQKEKK 581
            SA  FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVV  G TVNLGLWDTAGQEDYNRLRPLSYRGAD+F+LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTKLDL      F      GA    T +G         P  + C S     N   VF    + + Q P+T +K+ K
Sbjct:    2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGAPAYIECSS-KTQQNVKAVFDAAIKVVLQPPKTKKKKSK 189          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC11_ARATH (Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 7.387e-58
Identity = 121/196 (61.73%), Postives = 140/196 (71.43%), Query Frame = 3
Query:   12 SAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLSRG*ALFG*SSKIGACDHCTRRGTP-QTDWWLPITLNCIS*NLS*NGNPVF*CCHQGI*QTPRTNQKEKKEKTTR 596
            SA  F+KCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVV  G+TVNLGLWDTAGQEDYNRLRPLSYRGAD+F+LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTKLDL      F      GA    T +G   +     P  + C S     N   VF    + + Q P+  QK+KK K  +
Sbjct:    2 SASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKQIGAPTYIECSS-KTQENVKAVFDAAIRVVLQPPK--QKKKKSKAQK 192          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC3_ARATH (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 9.647e-58
Identity = 119/196 (60.71%), Postives = 142/196 (72.45%), Query Frame = 3
Query:   12 SAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLSRG*ALFG*SSKIGACDHCTRRGTPQTDW-WLPITLNCIS*NLS*NGNPVF*CCHQGI*QTPRTNQKEKKEKTTR 596
            SA  FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANV+ +G T+NLGLWDTAGQEDYNRLRPLSYRGAD+F+LAFSLVS+ASYENV KKW+PEL+HY+PGVP++LVGTKLDL      F  +   GA    T +G         P  + C S     N   VF    + + Q P+ N+K+KK K+ +
Sbjct:    2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKLDLRDDKQFF--AEHPGAVPISTAQGEELKKLIGAPAYIEC-SAKTQQNVKAVFDAAIKVVLQPPK-NKKKKKRKSQK 193          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC9_ARATH (Rac-like GTP-binding protein ARAC9 OS=Arabidopsis thaliana GN=ARAC9 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.384e-57
Identity = 95/123 (77.24%), Postives = 113/123 (91.87%), Query Frame = 3
Query:    6 ASSAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            +++A  FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNF+ANV+ +G TVNLGLWDTAGQEDYNR+RPLSYRGAD+F+LAFSL+SR S+EN+ KKW+PEL+HY+P VP+VLVGTK DL
Sbjct:   12 SATATTFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFNANVLVDGKTVNLGLWDTAGQEDYNRVRPLSYRGADVFILAFSLISRPSFENIAKKWVPELRHYAPTVPIVLVGTKSDL 134          

HSP 2 Score: 31.9574 bits (71), Expect = 2.384e-57
Identity = 20/65 (30.77%), Postives = 35/65 (53.85%), Query Frame = 1
Query:  376 REDKHYLADHPRLVPVTTAQGEELRKPIGGFLLP*IASRKTSAEMEIQ-FFDAAIREFNKPPAQT 567
            R++  +  ++P    +   QG+ELRK IG       +S+   A+M ++  FD AI+    PP++T
Sbjct:  135 RDNMQFPKNYPGACTIFPEQGQELRKEIGALAYIECSSK---AQMNVKAVFDEAIKVVLHPPSKT 196          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC1_RAT (Ras-related C3 botulinum toxin substrate 1 OS=Rattus norvegicus GN=Rac1 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 7.171e-45
Identity = 82/116 (70.69%), Postives = 98/116 (84.48%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   D+F++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC1_MOUSE (Ras-related C3 botulinum toxin substrate 1 OS=Mus musculus GN=Rac1 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 7.171e-45
Identity = 82/116 (70.69%), Postives = 98/116 (84.48%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   D+F++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC1_HUMAN (Ras-related C3 botulinum toxin substrate 1 OS=Homo sapiens GN=RAC1 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 7.171e-45
Identity = 82/116 (70.69%), Postives = 98/116 (84.48%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   D+F++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC1_CANFA (Ras-related C3 botulinum toxin substrate 1 OS=Canis familiaris GN=RAC1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 7.171e-45
Identity = 82/116 (70.69%), Postives = 98/116 (84.48%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   D+F++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC1_BOVIN (Ras-related C3 botulinum toxin substrate 1 OS=Bos taurus GN=RAC1 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 7.171e-45
Identity = 82/116 (70.69%), Postives = 98/116 (84.48%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   D+F++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC2_MOUSE (Ras-related C3 botulinum toxin substrate 2 OS=Mus musculus GN=Rac2 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 9.366e-45
Identity = 82/116 (70.69%), Postives = 97/116 (83.62%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +   VNLGLWDTAGQEDY+RLRPLSY   D+F++ FSLVS ASYENV  KW PE++H+ P  P++LVGTKLDL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDL 119          
The following BLAST results are available for this feature:
BLAST of EY674878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC1_BETVU7.387e-5862.83Rac-like GTP-binding protein RHO1 OS=Beta vulgaris... [more]
RAC11_ARATH7.387e-5861.73Rac-like GTP-binding protein ARAC11 OS=Arabidopsis... [more]
RAC3_ARATH9.647e-5860.71Rac-like GTP-binding protein ARAC3 OS=Arabidopsis ... [more]
RAC9_ARATH2.384e-5777.24Rac-like GTP-binding protein ARAC9 OS=Arabidopsis ... [more]
RAC1_RAT7.171e-4570.69Ras-related C3 botulinum toxin substrate 1 OS=Ratt... [more]
RAC1_MOUSE7.171e-4570.69Ras-related C3 botulinum toxin substrate 1 OS=Mus ... [more]
RAC1_HUMAN7.171e-4570.69Ras-related C3 botulinum toxin substrate 1 OS=Homo... [more]
RAC1_CANFA7.171e-4570.69Ras-related C3 botulinum toxin substrate 1 OS=Cani... [more]
RAC1_BOVIN7.171e-4570.69Ras-related C3 botulinum toxin substrate 1 OS=Bos ... [more]
RAC2_MOUSE9.366e-4570.69Ras-related C3 botulinum toxin substrate 2 OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-F04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674878 ID=EY674878; Name=EY674878; organism=Citrus sinensis; type=EST; length=1014bp
CAATGGCTTCTAGTGCTCCTTGGTTCATCAAGTGTGTAACAGTTGGTGAT
GGAGCTGTTGGCAAAACTTGCATGCTTATTTGCTACACAAGTAACAAGTT
TCCTACTGATTATATACCAACGGTGTTCGACAACTTCAGTGCAAATGTGG
TAGCTGAAGGCACTACTGTCAACTTAGGCCTCTGGGACACAGCTGGGCAA
GAGGATTACAATAGATTAAGGCCTTTGAGCTACAGAGGGGCAGACATTTT
TGTCTTAGCTTTCTCATTAGTCAGTCGAGCCAGCTATGAAAACGTTCTGA
AAAAGTGGATCCCTGAACTTCAGCATTACTCTCCCGGAGTACCAGTTGTA
TTGGTTGGAACCAAATTGGATCTGTCGAGAGGATAAGCATTATTTGGCTG
ATCATCCAAGATTGGTGCCTGTGACCACTGCACAAGGAGAGGAACTCCGC
AAACCGATTGGTGGCTTCCTATTACCTTGAATTGCATCTCGTAAAACCTC
AGCTGAAATGGAAATCCAGTTTTTTGATGCTGCCATCAGGGAATTTAACA
AACCCCCCGCACAAACCAAAAGGAAAAGAAAGAAAAAACAACGAGGGATC
CCTAATAAATGTCTTTTTGGGGGAAGGAACCCCTGAAAAATTTTAAATAA
AAACCCTTCCACCACAAAAAAAATGAAGGAAATGGAAGAATCCCCCGGGT
GGGGTTTTTCCAAAGATACCTATAAGCGGGTTAAAAAAAGGAAACAAGGA
TGGTTTATATTTTTCAAGGGTAGGGTTTTTAGAGGGGGGGTTTGGAACCA
AAATATTCCCTTCTTGAATTGTTCAACCCCTTCTTTTATGGGCTGCTTTT
ATTTTTTCTCTCTCCTTAAGTTCTTAATAAAAAAAAAAAAATATCACCCC
CGCTTACCCACATACTTCGAAAAACCTTAAAAGAATTAATTATGATGGAG
GATGAGTGTATTTCTTTTTTTATTCTTTATTCTAAACAATCCTCCCCCCT
CTTTTCCCGTGATT
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