EY674878

Overview
NameEY674878
Unique NameEY674878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1014
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC2_CAVPO (Ras-related C3 botulinum toxin substrate 2 OS=Cavia porcellus GN=RAC2 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 3.935e-43
Identity = 79/116 (68.10%), Postives = 96/116 (82.76%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +   VNLGLWDTAGQEDY+RLRPLSY   D+F++ FSLVS ASYENV   W P+++H+ P  P++L+GTKLDL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVHANWYPKVRHHCPSTPIILLGTKLDL 119          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RACA_DICDI (Rho-related protein racA OS=Dictyostelium discoideum GN=racA PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 1.145e-42
Identity = 77/116 (66.38%), Postives = 97/116 (83.62%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IK V VGDGAVGK+C+LI YT+N FP +Y+PTVFDN+SANV+ +G   NLGLWDTAGQEDY+RLRPLSY   D+F++ FS+VSRAS+EN+  KW PE+ H++P +P+VLVGTK DL
Sbjct:    4 IKLVVVGDGAVGKSCLLIAYTTNAFPGEYVPTVFDNYSANVMIDGKPFNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSRASFENIRAKWYPEILHHAPNIPIVLVGTKNDL 119          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC1_CAEEL (Ras-related protein ced-10 OS=Caenorhabditis elegans GN=ced-10 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.953e-42
Identity = 77/116 (66.38%), Postives = 95/116 (81.90%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  +NLGLWDTAGQEDY+RLRPLSY   D+F++ F+L + AS+ENV  KW PE+ H+ P  P++LVGTK DL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGRPINLGLWDTAGQEDYDRLRPLSYPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCPNTPIILVGTKADL 119          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RACA_ENTHI (Rho-related protein racA OS=Entamoeba histolytica GN=RACA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.187e-42
Identity = 74/116 (63.79%), Postives = 93/116 (80.17%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            +KCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SA V+ +   +NLGLWDTAGQEDY+RLRPLSY   D+F++ FS+VS  S++NV  KW PE+ H+ P  P +LVGTKLD+
Sbjct:    4 VKCVIVGDGAVGKTCLLISYTTNAFPNEYIPTVFDNYSATVMVDSKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSVVSPPSFDNVSSKWQPEVSHHCPKTPCLLVGTKLDM 119          

HSP 2 Score: 26.9498 bits (58), Expect = 2.187e-42
Identity = 14/31 (45.16%), Postives = 18/31 (58.06%), Query Frame = 1
Query:  376 REDKHYLA--DHPRLVPVTTAQGEELRKPIG 462
            REDK  L   +  ++ P+TT QGE   K IG
Sbjct:  120 REDKEQLKRLEEKKITPITTEQGEAKCKDIG 150          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RACF2_DICDI (Rho-related protein racF2 OS=Dictyostelium discoideum GN=racF2 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.421e-42
Identity = 74/116 (63.79%), Postives = 98/116 (84.48%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTCMLI YT+N FP++Y+PTVFDN+ AN++ +G   +LGLWDTAGQE+Y+RLRPLSY   D+F++ FS++S++S+ENV  KW  E+ H++PGVP+VLVGTK D+
Sbjct:    4 IKCVVVGDGAVGKTCMLISYTTNGFPSEYLPTVFDNYCANLMLDGKPYSLGLWDTAGQEEYDRLRPLSYPQTDVFLICFSIISQSSFENVSTKWFKEVNHHAPGVPIVLVGTKQDI 119          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RACB_DICDI (Rho-related protein racB OS=Dictyostelium discoideum GN=racB PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.369e-41
Identity = 75/116 (64.66%), Postives = 94/116 (81.03%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IK V VGDGAVGKTC+LI YTSN FPT+Y+PTVFDN+SANV+ +  TV+LGLWDTAGQEDY+RLRPLSY   D+F++ F+++S+ SY NV  KW PE+ H+ P   ++LVGTK DL
Sbjct:    4 IKLVVVGDGAVGKTCLLISYTSNSFPTEYVPTVFDNYSANVMVDNKTVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICFAIISQTSYTNVKSKWWPEVTHHCPNCTIILVGTKCDL 119          

HSP 2 Score: 21.557 bits (44), Expect = 2.369e-41
Identity = 13/33 (39.39%), Postives = 16/33 (48.48%), Query Frame = 1
Query:  376 REDKHYLAD--HPRLVPVTTAQGEELRKPIGGF 468
            REDK  L         P+T  QGE++ K I  F
Sbjct:  120 REDKESLEKLREKHQQPLTFQQGEQMAKEIKAF 152          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RHOG_MOUSE (Rho-related GTP-binding protein RhoG OS=Mus musculus GN=Rhog PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 6.282e-41
Identity = 77/116 (66.38%), Postives = 92/116 (79.31%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTC+LICYT+N FP +YIPTVFDN+SA    +G TVNL LWDTAGQE+Y+RLR LSY   ++FV+ FS+ S  SYENV  KW PE+ H+ P VP++LVGTK DL
Sbjct:    4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDL 119          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RHOG_HUMAN (Rho-related GTP-binding protein RhoG OS=Homo sapiens GN=RHOG PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 6.282e-41
Identity = 77/116 (66.38%), Postives = 92/116 (79.31%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTC+LICYT+N FP +YIPTVFDN+SA    +G TVNL LWDTAGQE+Y+RLR LSY   ++FV+ FS+ S  SYENV  KW PE+ H+ P VP++LVGTK DL
Sbjct:    4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDL 119          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RHOG_CRICR (Rho-related GTP-binding protein RhoG OS=Cricetus cricetus GN=RHOG PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 6.282e-41
Identity = 77/116 (66.38%), Postives = 92/116 (79.31%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTC+LICYT+N FP +YIPTVFDN+SA    +G TVNL LWDTAGQE+Y+RLR LSY   ++FV+ FS+ S  SYENV  KW PE+ H+ P VP++LVGTK DL
Sbjct:    4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDL 119          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RECG_ENTHI (Rho-related protein racG OS=Entamoeba histolytica GN=RACG PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.968e-40
Identity = 71/116 (61.21%), Postives = 95/116 (81.90%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            +K V VGDGAVGKTCMLI YT+N FP +YIPTVF+N+++++V +   +NLGLWDTAGQEDY+RLRPLSY   D+F++ FS+++ ASYENV  KW PE+  + P VP++LVGTK+D+
Sbjct:    4 VKLVIVGDGAVGKTCMLISYTTNAFPNEYIPTVFENYNSSLVVDDVKINLGLWDTAGQEDYDRLRPLSYPSTDVFLVCFSVIAPASYENVEGKWKPEIDQHCPNVPIILVGTKIDI 119          

HSP 2 Score: 23.0978 bits (48), Expect = 1.968e-40
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  412 LVPVTTAQGEELRKPIG 462
            +VP+   QG+EL K IG
Sbjct:  134 IVPIQPPQGDELAKKIG 150          
The following BLAST results are available for this feature:
BLAST of EY674878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC2_CAVPO3.935e-4368.10Ras-related C3 botulinum toxin substrate 2 OS=Cavi... [more]
RACA_DICDI1.145e-4266.38Rho-related protein racA OS=Dictyostelium discoide... [more]
RAC1_CAEEL1.953e-4266.38Ras-related protein ced-10 OS=Caenorhabditis elega... [more]
RACA_ENTHI2.187e-4263.79Rho-related protein racA OS=Entamoeba histolytica ... [more]
RACF2_DICDI7.421e-4263.79Rho-related protein racF2 OS=Dictyostelium discoid... [more]
RACB_DICDI2.369e-4164.66Rho-related protein racB OS=Dictyostelium discoide... [more]
RHOG_MOUSE6.282e-4166.38Rho-related GTP-binding protein RhoG OS=Mus muscul... [more]
RHOG_HUMAN6.282e-4166.38Rho-related GTP-binding protein RhoG OS=Homo sapie... [more]
RHOG_CRICR6.282e-4166.38Rho-related GTP-binding protein RhoG OS=Cricetus c... [more]
RECG_ENTHI1.968e-4061.21Rho-related protein racG OS=Entamoeba histolytica ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-F04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674878 ID=EY674878; Name=EY674878; organism=Citrus sinensis; type=EST; length=1014bp
CAATGGCTTCTAGTGCTCCTTGGTTCATCAAGTGTGTAACAGTTGGTGAT
GGAGCTGTTGGCAAAACTTGCATGCTTATTTGCTACACAAGTAACAAGTT
TCCTACTGATTATATACCAACGGTGTTCGACAACTTCAGTGCAAATGTGG
TAGCTGAAGGCACTACTGTCAACTTAGGCCTCTGGGACACAGCTGGGCAA
GAGGATTACAATAGATTAAGGCCTTTGAGCTACAGAGGGGCAGACATTTT
TGTCTTAGCTTTCTCATTAGTCAGTCGAGCCAGCTATGAAAACGTTCTGA
AAAAGTGGATCCCTGAACTTCAGCATTACTCTCCCGGAGTACCAGTTGTA
TTGGTTGGAACCAAATTGGATCTGTCGAGAGGATAAGCATTATTTGGCTG
ATCATCCAAGATTGGTGCCTGTGACCACTGCACAAGGAGAGGAACTCCGC
AAACCGATTGGTGGCTTCCTATTACCTTGAATTGCATCTCGTAAAACCTC
AGCTGAAATGGAAATCCAGTTTTTTGATGCTGCCATCAGGGAATTTAACA
AACCCCCCGCACAAACCAAAAGGAAAAGAAAGAAAAAACAACGAGGGATC
CCTAATAAATGTCTTTTTGGGGGAAGGAACCCCTGAAAAATTTTAAATAA
AAACCCTTCCACCACAAAAAAAATGAAGGAAATGGAAGAATCCCCCGGGT
GGGGTTTTTCCAAAGATACCTATAAGCGGGTTAAAAAAAGGAAACAAGGA
TGGTTTATATTTTTCAAGGGTAGGGTTTTTAGAGGGGGGGTTTGGAACCA
AAATATTCCCTTCTTGAATTGTTCAACCCCTTCTTTTATGGGCTGCTTTT
ATTTTTTCTCTCTCCTTAAGTTCTTAATAAAAAAAAAAAAATATCACCCC
CGCTTACCCACATACTTCGAAAAACCTTAAAAGAATTAATTATGATGGAG
GATGAGTGTATTTCTTTTTTTATTCTTTATTCTAAACAATCCTCCCCCCT
CTTTTCCCGTGATT
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