EY674878

Overview
NameEY674878
Unique NameEY674878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1014
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RALA_MOUSE (Ras-related protein Ral-A OS=Mus musculus GN=Rala PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.783e-11
Identity = 40/117 (34.19%), Postives = 63/117 (53.85%), Query Frame = 3
Query:   30 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDL 374
            K + VG G VGK+ + + +  ++F  DY PT  D++   VV +G  V + + DTAGQEDY  +R   +R  + F+  FS+    S+      ++ I  ++     VP +LVG K DL
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDL 131          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RALA_HUMAN (Ras-related protein Ral-A OS=Homo sapiens GN=RALA PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.783e-11
Identity = 40/117 (34.19%), Postives = 63/117 (53.85%), Query Frame = 3
Query:   30 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDL 374
            K + VG G VGK+ + + +  ++F  DY PT  D++   VV +G  V + + DTAGQEDY  +R   +R  + F+  FS+    S+      ++ I  ++     VP +LVG K DL
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDL 131          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RABQ_DICDI (Ras-related protein RabQ OS=Dictyostelium discoideum GN=rabQ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.783e-11
Identity = 36/119 (30.25%), Postives = 65/119 (54.62%), Query Frame = 3
Query:   21 WFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLD 371
            + +KC+  G   VGK+ +L+ +   +F  +   T+   F   +++ + + + L +WDTAGQE +  +    YRGA I +L + +  R S++  L  W+ E+ Q  SP + + L+G K D
Sbjct:    4 YHLKCIVTGPPFVGKSSLLLQFCEKEFSFEMDTTIGVEFQTRSILIDSSKIKLEIWDTAGQESFRSITTNYYRGAHIALLCYDITKRQSFQ-YLSGWMDEVRQMSSPNIVIALIGNKCD 121          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAB7A_RAT (Ras-related protein Rab-7a OS=Rattus norvegicus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.783e-11
Identity = 45/130 (34.62%), Postives = 67/130 (51.54%), Query Frame = 3
Query:    3 MASSAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPE-LQHYSP----GVPVVLVGTKLDL 374
            M S     +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V+ +   V + +WDTAGQE +  L    YRGAD  VL F + +  +++  L  W  E L   SP      P V++G K+DL
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAB7A_PONAB (Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.783e-11
Identity = 45/130 (34.62%), Postives = 67/130 (51.54%), Query Frame = 3
Query:    3 MASSAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPE-LQHYSP----GVPVVLVGTKLDL 374
            M S     +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V+ +   V + +WDTAGQE +  L    YRGAD  VL F + +  +++  L  W  E L   SP      P V++G K+DL
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAB7A_MOUSE (Ras-related protein Rab-7a OS=Mus musculus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.783e-11
Identity = 45/130 (34.62%), Postives = 67/130 (51.54%), Query Frame = 3
Query:    3 MASSAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPE-LQHYSP----GVPVVLVGTKLDL 374
            M S     +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V+ +   V + +WDTAGQE +  L    YRGAD  VL F + +  +++  L  W  E L   SP      P V++G K+DL
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAB7A_HUMAN (Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7A PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.783e-11
Identity = 45/130 (34.62%), Postives = 67/130 (51.54%), Query Frame = 3
Query:    3 MASSAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPE-LQHYSP----GVPVVLVGTKLDL 374
            M S     +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V+ +   V + +WDTAGQE +  L    YRGAD  VL F + +  +++  L  W  E L   SP      P V++G K+DL
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAB7A_CANFA (Ras-related protein Rab-7a OS=Canis familiaris GN=RAB7A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.783e-11
Identity = 45/130 (34.62%), Postives = 67/130 (51.54%), Query Frame = 3
Query:    3 MASSAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPE-LQHYSP----GVPVVLVGTKLDL 374
            M S     +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V+ +   V + +WDTAGQE +  L    YRGAD  VL F + +  +++  L  W  E L   SP      P V++G K+DL
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAB7A_BOVIN (Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.783e-11
Identity = 45/130 (34.62%), Postives = 67/130 (51.54%), Query Frame = 3
Query:    3 MASSAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPE-LQHYSP----GVPVVLVGTKLDL 374
            M S     +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V+ +   V + +WDTAGQE +  L    YRGAD  VL F + +  +++  L  W  E L   SP      P V++G K+DL
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.783e-11
Identity = 39/120 (32.50%), Postives = 63/120 (52.50%), Query Frame = 3
Query:   21 WFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDL 374
            +  K + +G+ +VGKT  L  Y  + F   ++ TV  +F    V      + L +WDTAGQE Y  +    YRGA  F+L + + ++ S+   ++ W  +++ YS     V+LVG K DL
Sbjct:   21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESF-TAVQDWATQIKTYSWDNAQVILVGNKCDL 139          
The following BLAST results are available for this feature:
BLAST of EY674878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RALA_MOUSE1.783e-1134.19Ras-related protein Ral-A OS=Mus musculus GN=Rala ... [more]
RALA_HUMAN1.783e-1134.19Ras-related protein Ral-A OS=Homo sapiens GN=RALA ... [more]
RABQ_DICDI1.783e-1130.25Ras-related protein RabQ OS=Dictyostelium discoide... [more]
RAB7A_RAT1.783e-1134.62Ras-related protein Rab-7a OS=Rattus norvegicus GN... [more]
RAB7A_PONAB1.783e-1134.62Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7... [more]
RAB7A_MOUSE1.783e-1134.62Ras-related protein Rab-7a OS=Mus musculus GN=Rab7... [more]
RAB7A_HUMAN1.783e-1134.62Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7... [more]
RAB7A_CANFA1.783e-1134.62Ras-related protein Rab-7a OS=Canis familiaris GN=... [more]
RAB7A_BOVIN1.783e-1134.62Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A ... [more]
RAB3D_RAT1.783e-1132.50GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-F04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674878 ID=EY674878; Name=EY674878; organism=Citrus sinensis; type=EST; length=1014bp
CAATGGCTTCTAGTGCTCCTTGGTTCATCAAGTGTGTAACAGTTGGTGAT
GGAGCTGTTGGCAAAACTTGCATGCTTATTTGCTACACAAGTAACAAGTT
TCCTACTGATTATATACCAACGGTGTTCGACAACTTCAGTGCAAATGTGG
TAGCTGAAGGCACTACTGTCAACTTAGGCCTCTGGGACACAGCTGGGCAA
GAGGATTACAATAGATTAAGGCCTTTGAGCTACAGAGGGGCAGACATTTT
TGTCTTAGCTTTCTCATTAGTCAGTCGAGCCAGCTATGAAAACGTTCTGA
AAAAGTGGATCCCTGAACTTCAGCATTACTCTCCCGGAGTACCAGTTGTA
TTGGTTGGAACCAAATTGGATCTGTCGAGAGGATAAGCATTATTTGGCTG
ATCATCCAAGATTGGTGCCTGTGACCACTGCACAAGGAGAGGAACTCCGC
AAACCGATTGGTGGCTTCCTATTACCTTGAATTGCATCTCGTAAAACCTC
AGCTGAAATGGAAATCCAGTTTTTTGATGCTGCCATCAGGGAATTTAACA
AACCCCCCGCACAAACCAAAAGGAAAAGAAAGAAAAAACAACGAGGGATC
CCTAATAAATGTCTTTTTGGGGGAAGGAACCCCTGAAAAATTTTAAATAA
AAACCCTTCCACCACAAAAAAAATGAAGGAAATGGAAGAATCCCCCGGGT
GGGGTTTTTCCAAAGATACCTATAAGCGGGTTAAAAAAAGGAAACAAGGA
TGGTTTATATTTTTCAAGGGTAGGGTTTTTAGAGGGGGGGTTTGGAACCA
AAATATTCCCTTCTTGAATTGTTCAACCCCTTCTTTTATGGGCTGCTTTT
ATTTTTTCTCTCTCCTTAAGTTCTTAATAAAAAAAAAAAAATATCACCCC
CGCTTACCCACATACTTCGAAAAACCTTAAAAGAATTAATTATGATGGAG
GATGAGTGTATTTCTTTTTTTATTCTTTATTCTAAACAATCCTCCCCCCT
CTTTTCCCGTGATT
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