EY674878

Overview
NameEY674878
Unique NameEY674878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1014
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: CDC42_CANAL (Cell division control protein 42 homolog OS=Candida albicans GN=CDC42 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 5.318e-40
Identity = 72/116 (62.07%), Postives = 94/116 (81.03%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTC+LI YT++KFP DY+PTVFDN++  V+       LGL+DTAGQEDY+RLRPLSY   D+F++ FS++S AS+ENV +KW PE+ H+ PGVP+++VGT+ DL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTSKFPADYVPTVFDNYAVTVMIGDEPFTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVISPASFENVKEKWFPEVHHHCPGVPIIIVGTQTDL 119          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RACC_ENTHI (Rho-related protein racC OS=Entamoeba histolytica GN=RACC PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 6.946e-40
Identity = 74/121 (61.16%), Postives = 94/121 (77.69%), Query Frame = 3
Query:    9 SSAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 371
            S  P  IK V VGDGAVGKTC+LICYT+N+FP DYIPTVFDN+  ++ A    + L LWDTAGQE+Y++LRPLSY  A IF++ FS+ S  SY+NV+ KW PE+ H++P VP++LVGTKLD
Sbjct:    2 SEKPTSIKLVVVGDGAVGKTCLLICYTTNEFPKDYIPTVFDNYVVSLTAGTRQIQLALWDTAGQEEYDQLRPLSYSSASIFLICFSVTSSVSYDNVITKWHPEVIHFAPKVPIILVGTKLD 122          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: CDC42_SCHPO (Cell division control protein 42 homolog OS=Schizosaccharomyces pombe GN=cdc42 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 9.071e-40
Identity = 73/116 (62.93%), Postives = 94/116 (81.03%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTC+LI YT+NKFP+DY+PTVFDN++  V+       LGL+DTAGQEDY+RLRPLSY   D+F++ FS+ S AS+ENV +KW PE+ H+ PGVP ++VGT++DL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLIVGTQIDL 119          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RHOL_DROME (Ras-like GTP-binding protein RhoL OS=Drosophila melanogaster GN=RhoL PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.256e-39
Identity = 74/122 (60.66%), Postives = 90/122 (73.77%), Query Frame = 3
Query:    9 SSAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            + +P  +K   VGDG VGKTCMLI YT N+FP +YIPTVFDN + N+  +    NL LWDTAGQEDY RLRPLSY   + F+L +S+ SR S+ENV  KW PE++H+S  VPVVLVGTKLDL
Sbjct:    6 TKSPRPLKITIVGDGMVGKTCMLITYTRNEFPEEYIPTVFDNHACNIAVDDRDYNLTLWDTAGQEDYERLRPLSYPSTNCFLLCYSISSRTSFENVKSKWWPEIRHFSAHVPVVLVGTKLDL 127          

HSP 2 Score: 27.335 bits (59), Expect = 1.256e-39
Identity = 15/49 (30.61%), Postives = 27/49 (55.10%), Query Frame = 1
Query:  421 VTTAQGEELRKPIGGFLLP*IASRKTSAEMEIQFFDAAIREFNKPPAQT 567
            VTT +G+++RK I  F L   +++K     ++  F+ A+R   + P  T
Sbjct:  136 VTTQEGKKMRKEIHAFNLVECSAKKKQNLQQV--FEEAVRAVERKPKTT 182          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: CDC42_RAT (Cell division control protein 42 homolog OS=Rattus norvegicus GN=Cdc42 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 2.021e-39
Identity = 72/116 (62.07%), Postives = 95/116 (81.90%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   D+F++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: CDC42_PIG (Cell division control protein 42 homolog OS=Sus scrofa GN=CDC42 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.021e-39
Identity = 72/116 (62.07%), Postives = 95/116 (81.90%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   D+F++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: CDC42_MOUSE (Cell division control protein 42 homolog OS=Mus musculus GN=Cdc42 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.021e-39
Identity = 72/116 (62.07%), Postives = 95/116 (81.90%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   D+F++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: CDC42_HUMAN (Cell division control protein 42 homolog OS=Homo sapiens GN=CDC42 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.021e-39
Identity = 72/116 (62.07%), Postives = 95/116 (81.90%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   D+F++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: CDC42_CHICK (Cell division control protein 42 homolog OS=Gallus gallus GN=CDC42 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.021e-39
Identity = 72/116 (62.07%), Postives = 95/116 (81.90%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   D+F++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: CDC42_CANFA (Cell division control protein 42 homolog OS=Canis familiaris GN=CDC42 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.021e-39
Identity = 72/116 (62.07%), Postives = 95/116 (81.90%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   D+F++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119          
The following BLAST results are available for this feature:
BLAST of EY674878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDC42_CANAL5.318e-4062.07Cell division control protein 42 homolog OS=Candid... [more]
RACC_ENTHI6.946e-4061.16Rho-related protein racC OS=Entamoeba histolytica ... [more]
CDC42_SCHPO9.071e-4062.93Cell division control protein 42 homolog OS=Schizo... [more]
RHOL_DROME1.256e-3960.66Ras-like GTP-binding protein RhoL OS=Drosophila me... [more]
CDC42_RAT2.021e-3962.07Cell division control protein 42 homolog OS=Rattus... [more]
CDC42_PIG2.021e-3962.07Cell division control protein 42 homolog OS=Sus sc... [more]
CDC42_MOUSE2.021e-3962.07Cell division control protein 42 homolog OS=Mus mu... [more]
CDC42_HUMAN2.021e-3962.07Cell division control protein 42 homolog OS=Homo s... [more]
CDC42_CHICK2.021e-3962.07Cell division control protein 42 homolog OS=Gallus... [more]
CDC42_CANFA2.021e-3962.07Cell division control protein 42 homolog OS=Canis ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-F04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674878 ID=EY674878; Name=EY674878; organism=Citrus sinensis; type=EST; length=1014bp
CAATGGCTTCTAGTGCTCCTTGGTTCATCAAGTGTGTAACAGTTGGTGAT
GGAGCTGTTGGCAAAACTTGCATGCTTATTTGCTACACAAGTAACAAGTT
TCCTACTGATTATATACCAACGGTGTTCGACAACTTCAGTGCAAATGTGG
TAGCTGAAGGCACTACTGTCAACTTAGGCCTCTGGGACACAGCTGGGCAA
GAGGATTACAATAGATTAAGGCCTTTGAGCTACAGAGGGGCAGACATTTT
TGTCTTAGCTTTCTCATTAGTCAGTCGAGCCAGCTATGAAAACGTTCTGA
AAAAGTGGATCCCTGAACTTCAGCATTACTCTCCCGGAGTACCAGTTGTA
TTGGTTGGAACCAAATTGGATCTGTCGAGAGGATAAGCATTATTTGGCTG
ATCATCCAAGATTGGTGCCTGTGACCACTGCACAAGGAGAGGAACTCCGC
AAACCGATTGGTGGCTTCCTATTACCTTGAATTGCATCTCGTAAAACCTC
AGCTGAAATGGAAATCCAGTTTTTTGATGCTGCCATCAGGGAATTTAACA
AACCCCCCGCACAAACCAAAAGGAAAAGAAAGAAAAAACAACGAGGGATC
CCTAATAAATGTCTTTTTGGGGGAAGGAACCCCTGAAAAATTTTAAATAA
AAACCCTTCCACCACAAAAAAAATGAAGGAAATGGAAGAATCCCCCGGGT
GGGGTTTTTCCAAAGATACCTATAAGCGGGTTAAAAAAAGGAAACAAGGA
TGGTTTATATTTTTCAAGGGTAGGGTTTTTAGAGGGGGGGTTTGGAACCA
AAATATTCCCTTCTTGAATTGTTCAACCCCTTCTTTTATGGGCTGCTTTT
ATTTTTTCTCTCTCCTTAAGTTCTTAATAAAAAAAAAAAAATATCACCCC
CGCTTACCCACATACTTCGAAAAACCTTAAAAGAATTAATTATGATGGAG
GATGAGTGTATTTCTTTTTTTATTCTTTATTCTAAACAATCCTCCCCCCT
CTTTTCCCGTGATT
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