EY674878

Overview
NameEY674878
Unique NameEY674878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1014
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RACC_DICDI (Rho-related protein racC OS=Dictyostelium discoideum GN=racC PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.234e-38
Identity = 71/120 (59.17%), Postives = 91/120 (75.83%), Query Frame = 3
Query:   12 SAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 371
            SA   IK V +GDGAVGKTC+LI Y +N+FP DYIPTVFDN+  N+ A    + LGLWDTAGQE+Y++LRPLSY  A++F++ FS+ +  S+ENV  KW PE+ H+ P VP +LVGTKLD
Sbjct:    2 SAAEVIKLVVIGDGAVGKTCLLISYANNRFPEDYIPTVFDNYVVNLTAGDRNIELGLWDTAGQEEYDKLRPLSYANANVFLICFSITNPVSFENVYTKWYPEVMHFCPEVPQILVGTKLD 121          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RACH_DICDI (Rho-related protein racH OS=Dictyostelium discoideum GN=racH PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 6.501e-38
Identity = 70/117 (59.83%), Postives = 92/117 (78.63%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPE-LQHYSPGVPVVLVGTKLDL 374
            IK + VGD +VGKTC+LI YT+N FP +Y+PTVFDN++AN +   T +NLGLWDTAG E+YN  RPLSY G D+F++ FSL+S+ S+ENV+KKW PE +Q+     P++LVGTKLDL
Sbjct:    5 IKVMVVGDMSVGKTCLLISYTTNSFPGEYVPTVFDNYNANAIVNNTPINLGLWDTAGSEEYNSFRPLSYPGTDVFIICFSLISQTSFENVIKKWHPEIIQNMEQVPPIILVGTKLDL 121          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RACE_DICDI (Rho-related protein racE OS=Dictyostelium discoideum GN=racE PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.448e-37
Identity = 69/116 (59.48%), Postives = 88/116 (75.86%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            +K V VGDGAVGKTC+LICY  N FP DY+PTVF+N++A        + + LWDTAGQE+Y+RLRPLSY GAD+ +L FS +S++SYE +  KW PE+ HY P VP +LVGTK+DL
Sbjct:   12 VKLVVVGDGAVGKTCLLICYAQNDFPVDYVPTVFENYTATRKRGNEDIKVHLWDTAGQEEYDRLRPLSYPGADVVLLCFSTISQSSYEAIRDKWAPEVNHYIPDVPSILVGTKIDL 127          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RACB_ENTHI (Rho-related protein racB (Fragment) OS=Entamoeba histolytica GN=RACB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 5.503e-37
Identity = 65/110 (59.09%), Postives = 87/110 (79.09%), Query Frame = 3
Query:   45 GDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            G G VGKTC+L+ YT+N FPT+Y+PTVFDN+SA V+ +   +NLGLWDTAGQEDY+R+RPLSY   D+F+L FS+VS  S+EN+  KW PE+ H+ P  P +L+GTK+D+
Sbjct:    1 GAGGVGKTCLLVSYTTNAFPTEYVPTVFDNYSATVMVDSRPINLGLWDTAGQEDYDRIRPLSYPQTDVFLLCFSVVSPPSFENISSKWKPEVSHHCPNAPCLLIGTKIDI 110          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC2_CAEEL (Ras-related protein rac-2 OS=Caenorhabditis elegans GN=rac-2 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.091e-36
Identity = 67/116 (57.76%), Postives = 89/116 (76.72%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            IKCV VGDGAVGKTC+L+ YT+N FP +YI TVFD +S NV+ +G  +NL LWDTAGQ+DY++ R LS+   D+F++ F+L + AS+ENV  KW PE+ H+ P  P++LVGTK DL
Sbjct:    4 IKCVVVGDGAVGKTCLLLSYTTNAFPGEYILTVFDTYSTNVMVDGRPINLSLWDTAGQDDYDQFRHLSFPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCPNTPIILVGTKADL 119          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RHOQ_RAT (Rho-related GTP-binding protein RhoQ OS=Rattus norvegicus GN=Rhoq PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.567e-36
Identity = 65/116 (56.03%), Postives = 94/116 (81.03%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            +KCV VGDGAVGKTC+L+ Y ++ FP +Y+PTVFD+++ +V   G    LGL+DTAGQEDY+RLRPLSY   D+F++ FS+V+ AS++NV ++W+PEL+ Y+P VP +L+GT++DL
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 125          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RHOQ_MOUSE (Rho-related GTP-binding protein RhoQ OS=Mus musculus GN=Rhoq PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 3.567e-36
Identity = 65/116 (56.03%), Postives = 94/116 (81.03%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            +KCV VGDGAVGKTC+L+ Y ++ FP +Y+PTVFD+++ +V   G    LGL+DTAGQEDY+RLRPLSY   D+F++ FS+V+ AS++NV ++W+PEL+ Y+P VP +L+GT++DL
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 125          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RHOQ_HUMAN (Rho-related GTP-binding protein RhoQ OS=Homo sapiens GN=RHOQ PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 3.567e-36
Identity = 65/116 (56.03%), Postives = 94/116 (81.03%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            +KCV VGDGAVGKTC+L+ Y ++ FP +Y+PTVFD+++ +V   G    LGL+DTAGQEDY+RLRPLSY   D+F++ FS+V+ AS++NV ++W+PEL+ Y+P VP +L+GT++DL
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 125          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RHOJ_MOUSE (Rho-related GTP-binding protein RhoJ OS=Mus musculus GN=Rhoj PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 3.020e-35
Identity = 66/116 (56.90%), Postives = 90/116 (77.59%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            +KCV VGDGAVGKTC+L+ Y ++ FP +Y+PTVFD+++  V   G    LGL+DTAGQEDYN+LRPLSY   D+F++ FS+V+ ASY NV ++W+PEL+   P VP VL+GT++DL
Sbjct:   22 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGTQIDL 137          
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RHOJ_HUMAN (Rho-related GTP-binding protein RhoJ OS=Homo sapiens GN=RHOJ PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.020e-35
Identity = 66/116 (56.90%), Postives = 90/116 (77.59%), Query Frame = 3
Query:   27 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            +KCV VGDGAVGKTC+L+ Y ++ FP +Y+PTVFD+++  V   G    LGL+DTAGQEDYN+LRPLSY   D+F++ FS+V+ ASY NV ++W+PEL+   P VP VL+GT++DL
Sbjct:   22 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGTQIDL 137          
The following BLAST results are available for this feature:
BLAST of EY674878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RACC_DICDI2.234e-3859.17Rho-related protein racC OS=Dictyostelium discoide... [more]
RACH_DICDI6.501e-3859.83Rho-related protein racH OS=Dictyostelium discoide... [more]
RACE_DICDI1.448e-3759.48Rho-related protein racE OS=Dictyostelium discoide... [more]
RACB_ENTHI5.503e-3759.09Rho-related protein racB (Fragment) OS=Entamoeba h... [more]
RAC2_CAEEL2.091e-3657.76Ras-related protein rac-2 OS=Caenorhabditis elegan... [more]
RHOQ_RAT3.567e-3656.03Rho-related GTP-binding protein RhoQ OS=Rattus nor... [more]
RHOQ_MOUSE3.567e-3656.03Rho-related GTP-binding protein RhoQ OS=Mus muscul... [more]
RHOQ_HUMAN3.567e-3656.03Rho-related GTP-binding protein RhoQ OS=Homo sapie... [more]
RHOJ_MOUSE3.020e-3556.90Rho-related GTP-binding protein RhoJ OS=Mus muscul... [more]
RHOJ_HUMAN3.020e-3556.90Rho-related GTP-binding protein RhoJ OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-F04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674878 ID=EY674878; Name=EY674878; organism=Citrus sinensis; type=EST; length=1014bp
CAATGGCTTCTAGTGCTCCTTGGTTCATCAAGTGTGTAACAGTTGGTGAT
GGAGCTGTTGGCAAAACTTGCATGCTTATTTGCTACACAAGTAACAAGTT
TCCTACTGATTATATACCAACGGTGTTCGACAACTTCAGTGCAAATGTGG
TAGCTGAAGGCACTACTGTCAACTTAGGCCTCTGGGACACAGCTGGGCAA
GAGGATTACAATAGATTAAGGCCTTTGAGCTACAGAGGGGCAGACATTTT
TGTCTTAGCTTTCTCATTAGTCAGTCGAGCCAGCTATGAAAACGTTCTGA
AAAAGTGGATCCCTGAACTTCAGCATTACTCTCCCGGAGTACCAGTTGTA
TTGGTTGGAACCAAATTGGATCTGTCGAGAGGATAAGCATTATTTGGCTG
ATCATCCAAGATTGGTGCCTGTGACCACTGCACAAGGAGAGGAACTCCGC
AAACCGATTGGTGGCTTCCTATTACCTTGAATTGCATCTCGTAAAACCTC
AGCTGAAATGGAAATCCAGTTTTTTGATGCTGCCATCAGGGAATTTAACA
AACCCCCCGCACAAACCAAAAGGAAAAGAAAGAAAAAACAACGAGGGATC
CCTAATAAATGTCTTTTTGGGGGAAGGAACCCCTGAAAAATTTTAAATAA
AAACCCTTCCACCACAAAAAAAATGAAGGAAATGGAAGAATCCCCCGGGT
GGGGTTTTTCCAAAGATACCTATAAGCGGGTTAAAAAAAGGAAACAAGGA
TGGTTTATATTTTTCAAGGGTAGGGTTTTTAGAGGGGGGGTTTGGAACCA
AAATATTCCCTTCTTGAATTGTTCAACCCCTTCTTTTATGGGCTGCTTTT
ATTTTTTCTCTCTCCTTAAGTTCTTAATAAAAAAAAAAAAATATCACCCC
CGCTTACCCACATACTTCGAAAAACCTTAAAAGAATTAATTATGATGGAG
GATGAGTGTATTTCTTTTTTTATTCTTTATTCTAAACAATCCTCCCCCCT
CTTTTCCCGTGATT
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