EY674878

Overview
NameEY674878
Unique NameEY674878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1014
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RHOC_BOVIN (Rho-related GTP-binding protein RhoC OS=Bos taurus GN=RHOC PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.657e-33
Identity = 63/115 (54.78%), Postives = 86/115 (74.78%), Query Frame = 3 
Query:   30 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DL
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
[Close]
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RHOA_RAT (Transforming protein RhoA OS=Rattus norvegicus GN=Rhoa PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.657e-33
Identity = 63/115 (54.78%), Postives = 86/115 (74.78%), Query Frame = 3 
Query:   30 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DL
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
[Close]
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RHOA_PONAB (Transforming protein RhoA OS=Pongo abelii GN=RHOA PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.657e-33
Identity = 63/115 (54.78%), Postives = 86/115 (74.78%), Query Frame = 3 
Query:   30 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DL
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
[Close]
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RHOA_MOUSE (Transforming protein RhoA OS=Mus musculus GN=Rhoa PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.657e-33
Identity = 63/115 (54.78%), Postives = 86/115 (74.78%), Query Frame = 3 
Query:   30 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DL
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
[Close]
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RHOA_HUMAN (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.657e-33
Identity = 63/115 (54.78%), Postives = 86/115 (74.78%), Query Frame = 3 
Query:   30 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DL
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
[Close]
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RHOA_CANFA (Transforming protein RhoA OS=Canis familiaris GN=RHOA PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.657e-33
Identity = 63/115 (54.78%), Postives = 86/115 (74.78%), Query Frame = 3 
Query:   30 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DL
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
[Close]
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RHOA_BOVIN (Transforming protein RhoA OS=Bos taurus GN=RHOA PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.657e-33
Identity = 63/115 (54.78%), Postives = 86/115 (74.78%), Query Frame = 3 
Query:   30 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DL
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
[Close]
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RHO1_CAEEL (Ras-like GTP-binding protein rhoA OS=Caenorhabditis elegans GN=rho-1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.657e-33
Identity = 63/115 (54.78%), Postives = 86/115 (74.78%), Query Frame = 3 
Query:   30 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DL
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPDVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNVPIILVGNKRDL 121
[Close]
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RHO1_DROME (Ras-like GTP-binding protein Rho1 OS=Drosophila melanogaster GN=Rho1 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.164e-33
Identity = 63/115 (54.78%), Postives = 86/115 (74.78%), Query Frame = 3 
Query:   30 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DL
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
[Close]
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RHOB_RAT (Rho-related GTP-binding protein RhoB OS=Rattus norvegicus GN=Rhob PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.827e-33
Identity = 62/115 (53.91%), Postives = 86/115 (74.78%), Query Frame = 3 
Query:   30 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   D+ ++ FS+ S  S EN+ +KW+PE++H+ P VP++LV  K DL
Sbjct:    7 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDL 121
The following BLAST results are available for this feature:
BLAST of EY674878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOC_BOVIN1.657e-3354.78Rho-related GTP-binding protein RhoC OS=Bos taurus... [more]
RHOA_RAT1.657e-3354.78Transforming protein RhoA OS=Rattus norvegicus GN=... [more]
RHOA_PONAB1.657e-3354.78Transforming protein RhoA OS=Pongo abelii GN=RHOA ... [more]
RHOA_MOUSE1.657e-3354.78Transforming protein RhoA OS=Mus musculus GN=Rhoa ... [more]
RHOA_HUMAN1.657e-3354.78Transforming protein RhoA OS=Homo sapiens GN=RHOA ... [more]
RHOA_CANFA1.657e-3354.78Transforming protein RhoA OS=Canis familiaris GN=R... [more]
RHOA_BOVIN1.657e-3354.78Transforming protein RhoA OS=Bos taurus GN=RHOA PE... [more]
RHO1_CAEEL1.657e-3354.78Ras-like GTP-binding protein rhoA OS=Caenorhabditi... [more]
RHO1_DROME2.164e-3354.78Ras-like GTP-binding protein Rho1 OS=Drosophila me... [more]
RHOB_RAT2.827e-3353.91Rho-related GTP-binding protein RhoB OS=Rattus nor... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-F04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674878 ID=EY674878; Name=EY674878; organism=Citrus sinensis; type=EST; length=1014bp
CAATGGCTTCTAGTGCTCCTTGGTTCATCAAGTGTGTAACAGTTGGTGAT
GGAGCTGTTGGCAAAACTTGCATGCTTATTTGCTACACAAGTAACAAGTT
TCCTACTGATTATATACCAACGGTGTTCGACAACTTCAGTGCAAATGTGG
TAGCTGAAGGCACTACTGTCAACTTAGGCCTCTGGGACACAGCTGGGCAA
GAGGATTACAATAGATTAAGGCCTTTGAGCTACAGAGGGGCAGACATTTT
TGTCTTAGCTTTCTCATTAGTCAGTCGAGCCAGCTATGAAAACGTTCTGA
AAAAGTGGATCCCTGAACTTCAGCATTACTCTCCCGGAGTACCAGTTGTA
TTGGTTGGAACCAAATTGGATCTGTCGAGAGGATAAGCATTATTTGGCTG
ATCATCCAAGATTGGTGCCTGTGACCACTGCACAAGGAGAGGAACTCCGC
AAACCGATTGGTGGCTTCCTATTACCTTGAATTGCATCTCGTAAAACCTC
AGCTGAAATGGAAATCCAGTTTTTTGATGCTGCCATCAGGGAATTTAACA
AACCCCCCGCACAAACCAAAAGGAAAAGAAAGAAAAAACAACGAGGGATC
CCTAATAAATGTCTTTTTGGGGGAAGGAACCCCTGAAAAATTTTAAATAA
AAACCCTTCCACCACAAAAAAAATGAAGGAAATGGAAGAATCCCCCGGGT
GGGGTTTTTCCAAAGATACCTATAAGCGGGTTAAAAAAAGGAAACAAGGA
TGGTTTATATTTTTCAAGGGTAGGGTTTTTAGAGGGGGGGTTTGGAACCA
AAATATTCCCTTCTTGAATTGTTCAACCCCTTCTTTTATGGGCTGCTTTT
ATTTTTTCTCTCTCCTTAAGTTCTTAATAAAAAAAAAAAAATATCACCCC
CGCTTACCCACATACTTCGAAAAACCTTAAAAGAATTAATTATGATGGAG
GATGAGTGTATTTCTTTTTTTATTCTTTATTCTAAACAATCCTCCCCCCT
CTTTTCCCGTGATT
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