EY674872

Overview
NameEY674872
Unique NameEY674872
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1024
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.293e-29
Identity = 62/153 (40.52%), Postives = 84/153 (54.90%), Query Frame = 2
Query:    5 ASGTTGTPPFKMKEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFG 463
            A   TG    + +E+ AFLA     TS       GGP +WG CY      +  +C  + ++  PC PG  Y+ RG + I +NYNYGA GEA+ ADLL +PE +  + T+AF+ A+W WMT    SQPS H    G W PT  D+ + R P +G
Sbjct:  138 AFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARW--PCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYG 281          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.617e-29
Identity = 58/151 (38.41%), Postives = 85/151 (56.29%), Query Frame = 2
Query:   11 GTTGTPPFKMKEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFG 463
            G TG+   + +++ AFLA    +T+ G+  A  G  AWG C+  E   +  YC  S ++  PC PG  YYGRG I +  NYNYG  G A+  DLL +P+ +  + T++F+ A+W WMT  +  +PS+H    G W P+  D  + R P FG
Sbjct:   68 GATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQW--PCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMT-AQAPKPSSHAVITGKWSPSGADRAAGRAPGFG 215          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 9.581e-29
Identity = 60/151 (39.74%), Postives = 91/151 (60.26%), Query Frame = 2
Query:   14 TTGTPPFKMKEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMSPSQ-SYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFG 463
            TTG      +E+ AFLA    +T+ G+  A  GP +WG C+  E + +  +YC+   K  +PC  G +YYGRG I I +NYNYG  G+A+ +DLL++P+ +  +AT++F+ A W WMTP +  +PS H    G W P+ +D  + R P +G
Sbjct:  120 TTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEP--KPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTP-QSPKPSCHAVITGQWTPSADDQAAGRVPGYG 267          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 3.641e-28
Identity = 63/151 (41.72%), Postives = 84/151 (55.63%), Query Frame = 2
Query:   11 GTTGTPPFKMKEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFG 463
            G TG    + +EI AFL     +T+ G+  A  GP AWG CY  E++  Q YCD S  Y   C  G +Y GRG I + WNYNYG  G+ L+  LL  PE +E +  ++F+ AIW WM P +  +PS H    GNW P+  D  + R P +G
Sbjct:  132 GNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSNYQ--CVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKP-QSPKPSCHAVITGNWTPSAADLEAGRVPGYG 278          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.384e-27
Identity = 57/143 (39.86%), Postives = 84/143 (58.74%), Query Frame = 2
Query:   41 KEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEM--SPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFG 463
            +E+ AFLA    +T+ G+  A  GP AWG C+  E   +    YC  S ++  PC  G +YYGRG I + +N+NYG  G+A+ ADLL  P+ +  +AT++F+ A W WMTP +  +PS H    G W P+ +D  + R P +G
Sbjct:  135 REVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQW--PCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTP-QSPKPSCHAVATGQWTPSADDQAAGRVPGYG 274          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.651e-22
Identity = 53/151 (35.10%), Postives = 76/151 (50.33%), Query Frame = 2
Query:   11 GTTGTPPFKMKEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFG 463
            GTTG    + +E+ AF      +T+ G+  A  GP AWG C  +E++PS                   YYGRG I +   YNY   G+AL  DL+++P+ +  +  +AF  AIW WMT  +  +PS HD     W P+ +D  S R P +G
Sbjct:   69 GTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDP----------------PYYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMT-AQSPKPSCHDVITNQWTPSGDDRSSGRLPGYG 202          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.603e-21
Identity = 52/153 (33.99%), Postives = 78/153 (50.98%), Query Frame = 2
Query:    5 ASGTTGTPPFKMKEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFG 463
            A  TTG+   + +E+ AFLA    +T+ G+  A  GP                         Y     ++Y+GRG I I +NYNYGA G+A+  DLL +P+ +  + T+ F+ A+W WMTP +  +PS+HD   G W P+  D  + R P +G
Sbjct:   34 AFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGP-------------------------YELGSTSDYFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTP-QSPKPSSHDVITGRWSPSSTDKAAGRVPGYG 160          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.089e-19
Identity = 53/151 (35.10%), Postives = 78/151 (51.66%), Query Frame = 2
Query:   11 GTTGTPPFKMKEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFG 463
            GTTG    + KEI AF      +T+ G  ++  GP A G C+  E +                  G  YYGRG I +    NY   G+A+  DL+++P+ +  +AT++F+ AIW WMTP + ++PS HD   G W P+  DT + R P +G
Sbjct:   69 GTTGDDTARKKEIAAFFGQTSHETTGGT-LSPDGPYAGGYCFLREGNQM----------------GNGYYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTP-QGNKPSCHDVITGRWTPSAADTSANRVPGYG 201          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.416e-18
Identity = 50/151 (33.11%), Postives = 77/151 (50.99%), Query Frame = 2
Query:   11 GTTGTPPFKMKEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFG 463
            GTTG    + KEI AF      +T+ G  ++  GP A G C+  E +                  G+ +YGRG I +    NY   G+A+  DL+++P+ +  +AT++F+ AIW WMT  + ++PS HD   G W P+  D  + R P +G
Sbjct:   62 GTTGDDTARKKEIAAFFGQTSHETTGG-SLSADGPFAGGYCFVREGNQM----------------GSGFYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMT-AQGNKPSCHDVITGQWTPSAADASANRQPGYG 194          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 1.298e-17
Identity = 47/132 (35.61%), Postives = 77/132 (58.33%), Query Frame = 2
Query:    5 ASGTTGTPPFKMKEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMSPSQS-YCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHD 397
            A GT G    + +E+ AFLAH+   TS G       P AWGLC+ +  + +++ +C  S    +PC  G +Y  RG I +  N+NYG  G+A+  DL+ +P+ +E++  ++F+ A+W WM+    ++PS HD
Sbjct:  169 AFGTIGDVATRKREVAAFLAHISQATS-GERSDVENPHAWGLCHINTTTVTENDFCTSS---DWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQ-HDNKPSCHD 295          
The following BLAST results are available for this feature:
BLAST of EY674872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
CHI7_ORYSI3.293e-2940.52Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIC_SECCE5.617e-2938.41Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI3_ORYSJ9.581e-2939.74Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI6_POPTR3.641e-2841.72Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI12_ORYSJ1.384e-2739.86Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI11_ORYSJ6.651e-2235.10Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_AVESA9.603e-2133.99Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHIT_PETHY3.089e-1935.10Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIB_SOLLC3.416e-1833.11Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
AGI_URTDI1.298e-1735.61Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-E10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674872 ID=EY674872; Name=EY674872; organism=Citrus sinensis; type=EST; length=1024bp
CCTCGCGTCCGGTACCACCGGTACTCCCCCTTTTAAGATGAAGGAGATTT
GCGCTTTTCTTGCCCACGTCTGCTGCAAGACCTCTTGTGGATATGGGGTG
GCCACTGGAGGACCATTGGCCTGGGGACTTTGCTACAACCATGAAATGAG
CCCCAGTCAGTCATATTGTGATGATTCCTACAAATACACATATCCCTGCA
CCCCTGGAGCTGAGTACTACGGCCGAGGTGCTATACCTATATACTGGAAC
TATAACTATGGAGCTACTGGGGAAGCATTGAGGGCGGATCTGTTGAGTCA
TCCTGAATACATTGAGCAGAATGCTACCCTTGCCTTTGAGGCTGCAATTT
GGAAGTGGATGACCCCGGTCAAGAAATCCCAGCCTTCAGCCCATGATGCC
TTTGTTGGCAACTGGAAGCCCACCAAGAATGATACTTTGTCCAAACGGGG
ACCTAACTTTGGGTACCACCAATGAATATTCTCTATGGTGAGAACGTATG
CGGTCAGGGTGATATTTGATGCTATGAACAACATTGTCTCTCATTAATTG
TATTACCTTGATATGTTGGGGGGTGGGTCAATAACAGGCAGGAACCTTAA
TGGAAAAAACTCTTCTTTGTTGCTGAAAAAAAAAACCTTCAACCCCAAAC
ACCCCCGCCTTCTACCTTGCTTCCTTCTGGAGGACTTTTTTTTGTAACCA
AAACTTATTTTTGTGGGAATGGACCCCCCCCCCAAGGGGGGAACCATTTA
ACAAAAAAAAACCGGGGGTAAAAATAAAACATTTGTTTGAAAATTTTTTT
TTTTTTTTTTCTAACTTTATTAAATATTGACCCAAGGGAAACATTAATGT
GTGGGAAATTTGACATCCCCCCCTCTCTTTTTCTCCTTGTTAAAAAATTT
AAAAAATTTTATTTTGTTTATTTAGTAAAAAACATTCTTTTTTTTTTTGC
TGTGTGTGTTAATTTTAATTTTTAGTTGTTTATAGCGTTAGAAATATTCG
TCGTATATTTACAACCCACTTTCC
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