EY674872

Overview
NameEY674872
Unique NameEY674872
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1024
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.892e-17
Identity = 49/151 (32.45%), Postives = 75/151 (49.67%), Query Frame = 2
Query:   11 GTTGTPPFKMKEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFG 463
            GT+G    + KEI AF      +T+ G    +  P   G C+  +   S                   YYGRG I +    NY   G A+R DL+++P+ +  +AT++F+ AIW WMTP + ++PS+HD  +G+W P+  D  + R P  G
Sbjct:   70 GTSGDDTARRKEIAAFFGQTSHETTGGS--LSAEPFTGGYCFVRQNDQSD-----------------RYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTP-QDNKPSSHDVIIGSWTPSAADQSANRAPGCG 200          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 4.932e-17
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 2
Query:  131 CYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPVK 373
            CY  E++  S+ YCD++ +  YPC PG  Y+GRG I + WNYNYGA G++L  +LL  PE +  N T+AF   +W WM  V+
Sbjct:  137 CYIEEINGASRDYCDENNRQ-YPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVR 217          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.413e-17
Identity = 46/120 (38.33%), Postives = 62/120 (51.67%), Query Frame = 2
Query:   41 KEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDA 400
            +EI AF AH   +T                CY  E++ S +YCD + K  +PC  G +YYGRG + I WNYNYG  G A+  D L  P  + ++A +AF+AA+W WM  V    P    A
Sbjct:  121 REIAAFFAHATHETG-------------HFCYISEINKSNAYCDPT-KRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNSVHGVVPQGFGA 226          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.413e-17
Identity = 47/129 (36.43%), Postives = 65/129 (50.39%), Query Frame = 2
Query:   20 GTPPFKMKEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFV 406
            GT     +EI AF AHV  +T                CY  E++ S +YCD S +  +PC  G +YYGRG + I WNYNYG  G  +  + L+ P  + Q+A +AF+ A+W WM  V    P    A +
Sbjct:  125 GTEVEGKREIAAFFAHVTHETG-------------HFCYISEINKSNAYCDASNRQ-WPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMNNVHGVMPQGFGATI 239          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.435e-16
Identity = 48/151 (31.79%), Postives = 74/151 (49.01%), Query Frame = 2
Query:   11 GTTGTPPFKMKEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFG 463
            GTTG    + KEI AF      +T+ G    +  P   G C+  +   S                   YYGRG I +    NY   G A+  +L+++P+ +  +AT++F+ AIW WMTP + ++PS+HD  +G W P+  D  + R P +G
Sbjct:   70 GTTGDDTARRKEIAAFFGQTSHETTGGS--LSAEPFTGGYCFVRQNDQSD-----------------RYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTP-QDNKPSSHDVIIGRWTPSAADQAANRVPGYG 200          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.448e-16
Identity = 59/192 (30.73%), Postives = 90/192 (46.88%), Query Frame = 2
Query:    5 ASGTTG-TPPFKMKEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGYHQ*IFSMVRTYAVRVIFDAMNNIVSH*LYYLDMLGGG 577
            A GT+G +     +E+ AF      +T+ G    +     WG C+  E++ + S                 YYGRG I +    NY A G AL  DL+ +P+ +  +A ++F+ AIW WMT  + ++PS HD  +G W P+  DT + R P +G    I +      V    DA  + + +   Y DMLG G
Sbjct:   73 AFGTSGGSAELIRRELAAFFGQTSHETTGGTR-GSSDQFQWGYCFKEEINKATS---------------PPYYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMT-AQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQ-NDANVDRIGYYKRYCDMLGAG 246          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.448e-16
Identity = 44/111 (39.64%), Postives = 63/111 (56.76%), Query Frame = 2
Query:   41 KEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPV 370
            +EI AF AHV  +T               +CY +E++  S  YCD + K  +PC PG +YYGRG + I WNYNYG  G+ +  D L  P+ + Q+ T++F+ A+W WM  V
Sbjct:  139 REIAAFFAHVTHETG-------------HMCYINEINGASMDYCDKNNKQ-WPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMNNV 235          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.453e-16
Identity = 43/122 (35.25%), Postives = 61/122 (50.00%), Query Frame = 2
Query:   11 GTTGTPPFKMKEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMSPS--QSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPV 370
            G  G+     +EI AF AH+  +T+              LC+  E       +YCD      YPC  G +YYGRG + + WNYNY   G+A+  D L +PE +  +   +F+AA+W WMT V
Sbjct:  127 GNEGSSDDNKREIAAFFAHISHETT-------------NLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMTNV 235          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.453e-16
Identity = 48/133 (36.09%), Postives = 68/133 (51.13%), Query Frame = 2
Query:   11 GTTGTPPFKMKEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFV 406
            G TG+     +EI AF AH   +T                CY  E+  PS++YCD++    +PC  G  YYGRG + I WN+NYG  G+++  D L  P+ + ++  LAF+ A+W W   V       HDAFV
Sbjct:  110 GRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDET-STQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTNNV-------HDAFV 221          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 9.302e-16
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 2
Query:   41 KEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPV 370
            +EI AF AHV  +T               +CY +E++  +  YCD S K  +PC PG +YYGRG + I WN+NYG  G+ +  D L  P+ + Q+ T++F+ A+W WM  V
Sbjct:  136 REIAAFFAHVTHETG-------------HMCYINEINGANMDYCDKSNKQ-WPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMNNV 232          
The following BLAST results are available for this feature:
BLAST of EY674872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
CHIP_TOBAC2.892e-1732.45Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI4_BRANA4.932e-1746.34Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIB_MAIZE8.413e-1738.33Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE8.413e-1736.43Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIQ_TOBAC1.435e-1631.79Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI8_ORYSJ2.448e-1630.73Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI5_ORYSJ2.448e-1639.64Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_BETVU5.453e-1635.25Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI6_ORYSJ5.453e-1636.09Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ9.302e-1638.74Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-E10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674872 ID=EY674872; Name=EY674872; organism=Citrus sinensis; type=EST; length=1024bp
CCTCGCGTCCGGTACCACCGGTACTCCCCCTTTTAAGATGAAGGAGATTT
GCGCTTTTCTTGCCCACGTCTGCTGCAAGACCTCTTGTGGATATGGGGTG
GCCACTGGAGGACCATTGGCCTGGGGACTTTGCTACAACCATGAAATGAG
CCCCAGTCAGTCATATTGTGATGATTCCTACAAATACACATATCCCTGCA
CCCCTGGAGCTGAGTACTACGGCCGAGGTGCTATACCTATATACTGGAAC
TATAACTATGGAGCTACTGGGGAAGCATTGAGGGCGGATCTGTTGAGTCA
TCCTGAATACATTGAGCAGAATGCTACCCTTGCCTTTGAGGCTGCAATTT
GGAAGTGGATGACCCCGGTCAAGAAATCCCAGCCTTCAGCCCATGATGCC
TTTGTTGGCAACTGGAAGCCCACCAAGAATGATACTTTGTCCAAACGGGG
ACCTAACTTTGGGTACCACCAATGAATATTCTCTATGGTGAGAACGTATG
CGGTCAGGGTGATATTTGATGCTATGAACAACATTGTCTCTCATTAATTG
TATTACCTTGATATGTTGGGGGGTGGGTCAATAACAGGCAGGAACCTTAA
TGGAAAAAACTCTTCTTTGTTGCTGAAAAAAAAAACCTTCAACCCCAAAC
ACCCCCGCCTTCTACCTTGCTTCCTTCTGGAGGACTTTTTTTTGTAACCA
AAACTTATTTTTGTGGGAATGGACCCCCCCCCCAAGGGGGGAACCATTTA
ACAAAAAAAAACCGGGGGTAAAAATAAAACATTTGTTTGAAAATTTTTTT
TTTTTTTTTTCTAACTTTATTAAATATTGACCCAAGGGAAACATTAATGT
GTGGGAAATTTGACATCCCCCCCTCTCTTTTTCTCCTTGTTAAAAAATTT
AAAAAATTTTATTTTGTTTATTTAGTAAAAAACATTCTTTTTTTTTTTGC
TGTGTGTGTTAATTTTAATTTTTAGTTGTTTATAGCGTTAGAAATATTCG
TCGTATATTTACAACCCACTTTCC
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