EY674872

Overview
NameEY674872
Unique NameEY674872
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1024
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.666e-14
Identity = 45/153 (29.41%), Postives = 70/153 (45.75%), Query Frame = 2
Query:   11 GTTGTPPFKMKEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRA--DLLSHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFG 463
            GTTG    + KEI AF      +T  G    + G    G C+  ++  S                   YYGRG I +    NY   G+ +    DL+++P+ +  +  ++F  AIW WMT  + ++PS H+  +G W P+  DT + R P +G
Sbjct:   70 GTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD-----------------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMT-AQDNKPSCHNVIIGQWTPSPADTAANRVPGYG 200          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.321e-13
Identity = 43/153 (28.10%), Postives = 71/153 (46.41%), Query Frame = 2
Query:   11 GTTGTPPFKMKEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRA--DLLSHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFG 463
            GT G    + KEI AF      +T+ G    + G    G C+  ++  S                   YYGRG I +    NY   G+ +    +L+++P+ +  +  ++F+ AIW WMT  + ++PS H+  +G W P+  DT + R P +G
Sbjct:   70 GTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-----------------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTE-QDNKPSCHNVIIGQWTPSPKDTAANRVPGYG 200          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.321e-13
Identity = 40/122 (32.79%), Postives = 57/122 (46.72%), Query Frame = 2
Query:   11 GTTGTPPFKMKEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWMTPVK 373
            G  G+     +EI A  AH   +T                CY  E+   S+ YCD+     YPC+    Y+GRG I + WN+NYG  G A   D L  PE +  +  ++F+ A+W WM  V+
Sbjct:  110 GRVGSEDDSKREIAAAFAHFTHETG-------------HFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVR 218          
BLAST of EY674872 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 7.370e-13
Identity = 39/118 (33.05%), Postives = 62/118 (52.54%), Query Frame = 2
Query:   11 GTTGTPPFKMKEICAFLAHVCCKTSCGYGVATGGPLAWGLCYNHEMSP-SQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALRADLLSHPEYIEQNATLAFEAAIWKWM 361
            GT  T   + +EI A+ AHV  +T               LCY  E    + +YC +S +Y  PC P  EY+GRG + + WNYNY   G+ L  D L+ P+ + ++  ++F+ ++W W+
Sbjct:   88 GTKCTDEDRKREIAAYFAHVTHETG-------------HLCYIEERDGHANNYCQESQQY--PCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI 190          
The following BLAST results are available for this feature:
BLAST of EY674872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
CHIA_SOLCI6.666e-1429.41Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIA_SOLLC4.321e-1328.10Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI4_PHAVU4.321e-1332.79Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIT_DIOJA7.370e-1333.05Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-E10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674872 ID=EY674872; Name=EY674872; organism=Citrus sinensis; type=EST; length=1024bp
CCTCGCGTCCGGTACCACCGGTACTCCCCCTTTTAAGATGAAGGAGATTT
GCGCTTTTCTTGCCCACGTCTGCTGCAAGACCTCTTGTGGATATGGGGTG
GCCACTGGAGGACCATTGGCCTGGGGACTTTGCTACAACCATGAAATGAG
CCCCAGTCAGTCATATTGTGATGATTCCTACAAATACACATATCCCTGCA
CCCCTGGAGCTGAGTACTACGGCCGAGGTGCTATACCTATATACTGGAAC
TATAACTATGGAGCTACTGGGGAAGCATTGAGGGCGGATCTGTTGAGTCA
TCCTGAATACATTGAGCAGAATGCTACCCTTGCCTTTGAGGCTGCAATTT
GGAAGTGGATGACCCCGGTCAAGAAATCCCAGCCTTCAGCCCATGATGCC
TTTGTTGGCAACTGGAAGCCCACCAAGAATGATACTTTGTCCAAACGGGG
ACCTAACTTTGGGTACCACCAATGAATATTCTCTATGGTGAGAACGTATG
CGGTCAGGGTGATATTTGATGCTATGAACAACATTGTCTCTCATTAATTG
TATTACCTTGATATGTTGGGGGGTGGGTCAATAACAGGCAGGAACCTTAA
TGGAAAAAACTCTTCTTTGTTGCTGAAAAAAAAAACCTTCAACCCCAAAC
ACCCCCGCCTTCTACCTTGCTTCCTTCTGGAGGACTTTTTTTTGTAACCA
AAACTTATTTTTGTGGGAATGGACCCCCCCCCCAAGGGGGGAACCATTTA
ACAAAAAAAAACCGGGGGTAAAAATAAAACATTTGTTTGAAAATTTTTTT
TTTTTTTTTTCTAACTTTATTAAATATTGACCCAAGGGAAACATTAATGT
GTGGGAAATTTGACATCCCCCCCTCTCTTTTTCTCCTTGTTAAAAAATTT
AAAAAATTTTATTTTGTTTATTTAGTAAAAAACATTCTTTTTTTTTTTGC
TGTGTGTGTTAATTTTAATTTTTAGTTGTTTATAGCGTTAGAAATATTCG
TCGTATATTTACAACCCACTTTCC
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