EY674855

Overview
NameEY674855
Unique NameEY674855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1017
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674855 vs. ExPASy Swiss-Prot
Match: KCAB2_HUMAN (Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 5.035e-14
Identity = 54/167 (32.34%), Postives = 86/167 (51.50%), Query Frame = 2
Query:   20 LGTQGLEVSKLGLGCMNLSGGYSSPVSEEDGISMIKHAFSRGITFFDTADMYGQNANEILLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDPIRRAHAV 508
            LG  GL VS LGLG     GG    +++E    ++  A+  GI  FDTA++Y     E++LG   K     R  + I TK  +G     + G+  K    ++    +ASL+RL ++Y+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V
Sbjct:   42 LGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRK----HIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSV 201          
BLAST of EY674855 vs. ExPASy Swiss-Prot
Match: KCAB2_BOVIN (Voltage-gated potassium channel subunit beta-2 OS=Bos taurus GN=KCNAB2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.035e-14
Identity = 54/167 (32.34%), Postives = 86/167 (51.50%), Query Frame = 2
Query:   20 LGTQGLEVSKLGLGCMNLSGGYSSPVSEEDGISMIKHAFSRGITFFDTADMYGQNANEILLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDPIRRAHAV 508
            LG  GL VS LGLG     GG    +++E    ++  A+  GI  FDTA++Y     E++LG   K     R  + I TK  +G     + G+  K    ++    +ASL+RL ++Y+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V
Sbjct:   42 LGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRK----HIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSV 201          
BLAST of EY674855 vs. ExPASy Swiss-Prot
Match: YGHZ_ECOLI (Uncharacterized protein yghZ OS=Escherichia coli (strain K12) GN=yghZ PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.576e-14
Identity = 53/163 (32.52%), Postives = 86/163 (52.76%), Query Frame = 2
Query:   23 GTQGLEVSKLGLGCMNLSGGYSSPVSEEDGISMIKHAFSRGITFFDTADMYGQNANEI------LLGKAFKMLPREKVQIATKFGV---VGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPD 484
            G  GL +  L LG  +  G  ++  S+    ++++ AF  GIT FD A+ YG            LL + F    R+++ I+TK G     G   +G    G+  Y+ +  + SLKR+ ++Y+D++Y HRVD + P+EET   +   V+ GK  Y+G+S  SP+
Sbjct:   19 GKSGLRLPALSLGLWHNFGHVNALESQR---AILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAY-RDELIISTKAGYDMWPGPYGSG----GSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPE 173          
BLAST of EY674855 vs. ExPASy Swiss-Prot
Match: YGHZ_ECO57 (Uncharacterized protein yghZ OS=Escherichia coli O157:H7 GN=yghZ PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.576e-14
Identity = 53/163 (32.52%), Postives = 86/163 (52.76%), Query Frame = 2
Query:   23 GTQGLEVSKLGLGCMNLSGGYSSPVSEEDGISMIKHAFSRGITFFDTADMYGQNANEI------LLGKAFKMLPREKVQIATKFGV---VGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPD 484
            G  GL +  L LG  +  G  ++  S+    ++++ AF  GIT FD A+ YG            LL + F    R+++ I+TK G     G   +G    G+  Y+ +  + SLKR+ ++Y+D++Y HRVD + P+EET   +   V+ GK  Y+G+S  SP+
Sbjct:   19 GKSGLRLPALSLGLWHNFGHVNALESQR---AILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAY-RDELIISTKAGYDMWPGPYGSG----GSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPE 173          
BLAST of EY674855 vs. ExPASy Swiss-Prot
Match: KCAB2_RAT (Voltage-gated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.576e-14
Identity = 54/167 (32.34%), Postives = 86/167 (51.50%), Query Frame = 2
Query:   20 LGTQGLEVSKLGLGCMNLSGGYSSPVSEEDGISMIKHAFSRGITFFDTADMYGQNANEILLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDPIRRAHAV 508
            LG  GL VS LGLG     GG    +++E    ++  A+  GI  FDTA++Y     E++LG   K     R  + I TK  +G     + G+  K    ++    +ASL+RL ++Y+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V
Sbjct:   42 LGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRK----HIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSV 201          
BLAST of EY674855 vs. ExPASy Swiss-Prot
Match: KCAB2_MOUSE (Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.576e-14
Identity = 54/167 (32.34%), Postives = 86/167 (51.50%), Query Frame = 2
Query:   20 LGTQGLEVSKLGLGCMNLSGGYSSPVSEEDGISMIKHAFSRGITFFDTADMYGQNANEILLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDPIRRAHAV 508
            LG  GL VS LGLG     GG    +++E    ++  A+  GI  FDTA++Y     E++LG   K     R  + I TK  +G     + G+  K    ++    +ASL+RL ++Y+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V
Sbjct:   42 LGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRK----HIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSV 201          
BLAST of EY674855 vs. ExPASy Swiss-Prot
Match: KCAB1_CHICK (Voltage-gated potassium channel subunit beta-1 OS=Gallus gallus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.122e-13
Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 2
Query:   20 LGTQGLEVSKLGLGCMNLSGGYSSPVSEEDGISMIKHAFSRGITFFDTADMYGQNANEILLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDPIRRAHAV 508
            LG  GL VS LGLG     GG    +S+E    ++  A+  G+  FDTA++Y     E++LG   K     R  + I TK  +G     + G+  K   + +R    ASL+RL ++Y+D+ + +R D + P+EE +  M  ++ +G   Y G S  S   I  A++V
Sbjct:   76 LGKSGLRVSCLGLGTWVTFGGQ---ISDEVAEQLMTIAYESGVNLFDTAEVYAAGKAEVILGNILKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLR----ASLQRLQLEYVDVVFANRPDNNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSV 235          
BLAST of EY674855 vs. ExPASy Swiss-Prot
Match: KCAB1_RABIT (Voltage-gated potassium channel subunit beta-1 OS=Oryctolagus cuniculus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.465e-13
Identity = 53/172 (30.81%), Postives = 87/172 (50.58%), Query Frame = 2
Query:    5 VPRVPLGTQGLEVSKLGLGCMNLSGGYSSPVSEEDGISMIKHAFSRGITFFDTADMYGQNANEILLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDPIRRAHAV 508
            +P   LG  GL VS LGLG     GG    +S+E    ++  A+  G+  FDTA++Y     E++LG   K     R  + I TK  +G     + G+  K    ++    + SL+RL ++Y+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A++V
Sbjct:   89 MPHRNLGKSGLRVSCLGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRK----HIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSV 253          
BLAST of EY674855 vs. ExPASy Swiss-Prot
Match: KCAB1_HUMAN (Voltage-gated potassium channel subunit beta-1 OS=Homo sapiens GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.465e-13
Identity = 53/172 (30.81%), Postives = 87/172 (50.58%), Query Frame = 2
Query:    5 VPRVPLGTQGLEVSKLGLGCMNLSGGYSSPVSEEDGISMIKHAFSRGITFFDTADMYGQNANEILLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDPIRRAHAV 508
            +P   LG  GL VS LGLG     GG    +S+E    ++  A+  G+  FDTA++Y     E++LG   K     R  + I TK  +G     + G+  K    ++    + SL+RL ++Y+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A++V
Sbjct:   89 MPHRNLGKSGLRVSCLGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRK----HIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSV 253          
BLAST of EY674855 vs. ExPASy Swiss-Prot
Match: KCAB1_RAT (Voltage-gated potassium channel subunit beta-1 OS=Rattus norvegicus GN=Kcnab1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.264e-13
Identity = 52/167 (31.14%), Postives = 85/167 (50.90%), Query Frame = 2
Query:   20 LGTQGLEVSKLGLGCMNLSGGYSSPVSEEDGISMIKHAFSRGITFFDTADMYGQNANEILLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDPIRRAHAV 508
            LG  GL VS LGLG     GG    +S+E    ++  A+  G+  FDTA++Y     E++LG   K     R  + I TK  +G     + G+  K    ++    + SL+RL ++Y+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A++V
Sbjct:   76 LGKSGLRVSCLGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRK----HIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSV 235          
The following BLAST results are available for this feature:
BLAST of EY674855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
KCAB2_HUMAN5.035e-1432.34Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_BOVIN5.035e-1432.34Voltage-gated potassium channel subunit beta-2 OS=... [more]
YGHZ_ECOLI6.576e-1432.52Uncharacterized protein yghZ OS=Escherichia coli (... [more]
YGHZ_ECO576.576e-1432.52Uncharacterized protein yghZ OS=Escherichia coli O... [more]
KCAB2_RAT6.576e-1432.34Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_MOUSE6.576e-1432.34Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB1_CHICK1.122e-1332.34Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_RABIT1.465e-1330.81Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_HUMAN1.465e-1330.81Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_RAT3.264e-1331.14Voltage-gated potassium channel subunit beta-1 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-D04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674855 ID=EY674855; Name=EY674855; organism=Citrus sinensis; type=EST; length=1017bp
CCAAGTTCCAAGGGTGCCCCTTGGTACCCAAGGCCTCGAGGTTTCAAAGT
TGGGGCTCGGATGCATGAACCTGAGTGGAGGTTATAGCTCTCCAGTCTCA
GAAGAGGATGGCATCTCAATGATAAAACATGCTTTCAGTAGAGGAATCAC
TTTCTTTGATACTGCTGATATGTACGGACAAAATGCTAATGAAATTCTTC
TGGGAAAGGCCTTCAAGATGTTGCCCAGAGAAAAGGTACAAATAGCCACA
AAGTTTGGGGTTGTAGGACTAAGAGATAATGGCGTGATCGTGAAGGGCAC
CCCTGATTACGTGCGCTCGTGTTGTGAAGCTAGCTTGAAGCGACTTGATG
TGGATTACATTGATCTATATTATCAACATAGAGTGGACACATCAGTCCCC
ATAGAGGAAACCATTGGCGAAATGAAGAAGCTGGTGGAAGAGGGTAAAAT
CAAGTACATTGGATTATCTGAGGCCAGCCCAGACCCAATTAGGAGAGCAC
ATGCTGTTCATCCCCATCACAGCTGTACAAATGGAATGGTCCCTCTGGAC
TCGTGATATTGAGGAAAAAATAATACCCCTCTGCAGGGAACTCGGGTTTG
GAATAGTTCCATACAGTCCTCTTGGTCATGGATTTTTTGGGGGGGCAAGC
TGTTGGGGAAAAAGGGGCCTGCCAAAAAGCTTTTTTGGTTTTTTCTTCCA
AAGGTCCAAAGGAGAAAAACCCTGGAAAGGGAAAAAGAAATAATTTAATT
TTTCCCCAATAAAAAAACTTTGCCCAAAAAGAAAAAATTGGGCCTTTTCG
GGCCCAACTAAACCCCCCTAACCAGGGGGGTTTTTGGGGAAAGGGGGGGG
AGGAAATCGCTTACCCCTATATTCCCGGGGGGGAACAACTCTAAAAATTT
AAAAAAACCCTCTTTGGCTGACAACAATTTTTTTCGCCCCCCCTTTGTTG
GGGAGGATTTTTATTACATTTTTTCTTTTAGAAAGGATGAGAGGCTTTCT
GTTGATAATAATGAAAT
back to top