EY674853

Overview
NameEY674853
Unique NameEY674853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1000
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY674853 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.352e-11
Identity = 53/153 (34.64%), Postives = 75/153 (49.02%), Query Frame = 2 
Query:  161 ATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYYEFPTPKM*ETSLILSSWETERVNLTRSKPIIYANGKGEKRTENEPLVLPLLAIIHLYTNLLGTFSILAFLGERMGPPRGLKKTME 619
            A F E ++ +W+  H   +  G   +L LD  SG GF S+ +YLFG+VS++IKLV GDSAGTVTAFY     P   E         T    + ++   IY NG G  R +   L        H Y+ L    S++  + E    P  ++K +E
Sbjct:   27 AKFDELYRSSWAMDHC--VNEGEVTKLKLDNYSGAGFESRSKYLFGKVSIQIKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYIVQTN--IYVNGVG-NREQRLNLWFDPTTEFHTYSILWSKRSVVFMVDE---TPIRVQKNLE 171
[Close]
BLAST of EY674853 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.764e-11
Identity = 49/162 (30.25%), Postives = 76/162 (46.91%), Query Frame = 2 
Query:  176 DFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYYEFPTPKM*ETSLILSSWETERVNLTRSKPI-----IYANGKGEKRTENEPLVLPLLAIIHLYTNLLGTFSILAFLGERMGPPRGLKKTMERAPFFPMNP 646
            ++ VTW   H+ ++  G+ +QL +D +SG GF SK  Y  G   M+IKL P DSAG VTAFY         E        + E +   + KPI     +++NG+G +  +  P   P  +  H Y  L   + I+ ++ +   P R  K   +    +P  P
Sbjct:   35 NYVVTWGQDHILKLNQGKEVQLSMDYSSGSGFESKSHYGSGFFQMRIKLPPRDSAGVVTAFYLTSKGDTHDEV-------DFEFLGNRQGKPIAIQTNVFSNGQGGREQKFVPWFDPTTS-FHTYGILWNPYQIVFYVDK--VPIRVFKNIKKSGVNYPSKP 186
The following BLAST results are available for this feature:
BLAST of EY674853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
XTH9_ARATH1.352e-1134.64Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH2_ARATH8.764e-1130.25Xyloglucan endotransglucosylase/hydrolase protein ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-D02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674853 ID=EY674853; Name=EY674853; organism=Citrus sinensis; type=EST; length=1000bp
CATAACCCTACATATCCCCTTTAGATCTCTTTCTAATTAGTAACAGATAA
TATTTTATTGTACGGCTTGTTTTACAGCTATGGCTATCCTAAGAAATGCA
ATAGCATTATTTGTGTTGCTTTACTGTCTTGTATCCTGCTCTTGCGTTTT
AGGGCGACCGGCTACTTTTCTTGAGGATTTTAAAGTCACATGGTCCGATG
CCCATCTCAGGCAAATCGAGGGAGGGAGGGCCATCCAGCTAGTTCTAGAC
CAAAATTCAGGATGTGGGTTTGCCTCCAAAAGGCAGTACTTGTTCGGGCG
TGTAAGCATGAAGATCAAGCTCGTTCCTGGAGACTCTGCTGGAACTGTCA
CTGCCTTTTATTATGAATTCCCAACACCGAAAATGTGAGAGACGAGCTTG
ATTTTGAGTTCCTGGGAAACCGAACGGGTCAACCTTACCCGGTCCAAACC
TATTATCTATGCAAATGGAAAAGGCGAAAAAAGAACAGAGAATGAACCTC
TGGTTTTGCCCCTGCTTGCAATTATCCACCTTTACACTAATCTCCTGGGA
ACCTTCTCCATTTTGGCTTTCCTAGGGGAAAGAATGGGCCCACCCAGGGG
TTTAAAAAAAACAATGGAAAGGGCTCCCTTTTTCCCAATGAACCCCACCC
CATGGGGGGGGAGATCCAACCTCATGGAGAATTCCAAATAACTGGGGCAA
CAAAAAGTGGGATCTATATAAAAAAATAATTGGGAACAAAAAACCCCCCT
TTTTTTATCTTAATTTCACAAAAAATTTTTAAATATAAAAAGGGGTACCC
CAAAATTCACTTGACACAAAAATAAAAGTGTGGGCCCTCACAAAAACCAG
AGGTTGTAATTGGGGGGGGGAGAGGCAAAATAATAATTTTATTCAACCCC
CTCCCTTCCCTCACCCAATGAGGGACGGACAAACTAAAAATAAAAATAAA
ACGAAAGAGTTGGGGGTATACTGACTCTCCTTTAACCCCCCTCTAACATG
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