EY674852

Overview
NameEY674852
Unique NameEY674852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1053
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_PYRCJ (50S ribosomal protein L10e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.266e-23
Identity = 61/125 (48.80%), Postives = 77/125 (61.60%), Query Frame = 1
Query:   31 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 405
            F     LV+ E+  +  +ALEAAR   +KY+ KY G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+  V  K  +  H +EALRRA  K P   +I+V  K
Sbjct:   47 FTMVAKLVAEERGQIRMQALEAARQISSKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVIFYVEFKPEHLAHVKEALRRAASKLPIPTRIVVEPK 171          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_THENV (50S ribosomal protein L10e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.654e-23
Identity = 59/125 (47.20%), Postives = 75/125 (60.00%), Query Frame = 1
Query:   31 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 405
            FP    LV  E+  +  +ALEAAR    KY++KY G   ++LR+   P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+     K  +  H +EALRRA  K P   +I++  K
Sbjct:   47 FPLVAKLVVQERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLEAVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEAGQVIFYAEFKPEHVAHMKEALRRASTKLPLPTRIVIEAK 171          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_METTH (50S ribosomal protein L10e OS=Methanobacterium thermoautotrophicum GN=rpl10e PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.160e-23
Identity = 55/125 (44.00%), Postives = 79/125 (63.20%), Query Frame = 1
Query:   28 QFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 402
            +FP  + +       ++  ALEAARIA N+YM + AG+  +HL++RV+P H++R N M + AGADR+Q GMR AFGKP  T A V   Q ++++     N   A+EALRRA  KFP   +I++ R
Sbjct:   30 EFPISLSVAVKAPTQITHNALEAARIASNRYMQRRAGRMGYHLKIRVYPHHIVRENPMATGAGADRVQDGMRKAFGKPVSTVALVKKNQKIITIETNKKNFKDAKEALRRAAMKFPVPCRIVIDR 154          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_PYRAR (50S ribosomal protein L10e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.685e-23
Identity = 58/125 (46.40%), Postives = 75/125 (60.00%), Query Frame = 1
Query:   31 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 405
            FP    L+  E+  +  +ALEAAR   +KY+ KY G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQ+L     K  +  H +EA RRA  K P   +I++  K
Sbjct:   47 FPMVAKLIVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVIPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQILFYAEFKPEHLAHIKEAFRRAASKLPLPTRIVIEPK 171          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_PYRAE (50S ribosomal protein L10e OS=Pyrobaculum aerophilum GN=rpl10e PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 6.285e-23
Identity = 60/125 (48.00%), Postives = 75/125 (60.00%), Query Frame = 1
Query:   31 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 405
            F     LV  E+  +  +ALEAAR   +KY+ KY G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQVL     K  +  H +EALRRA  K P   +I++  K
Sbjct:   47 FTMTAKLVVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVLFYAEFKPEHLPHIKEALRRAASKLPLPTRIVIEPK 171          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_ARCFU (50S ribosomal protein L10e OS=Archaeoglobus fulgidus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 8.208e-23
Identity = 57/124 (45.97%), Postives = 77/124 (62.10%), Query Frame = 1
Query:   31 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 402
            FP  + LV+ E   +   ALEAAR+  NKY+++ AG   + L++R+ P H+LR +KM   AGADR+  GMR AFGKP G  ARV  G  ++SV  K  +   A+EALRRA  K P   KI+V +
Sbjct:   42 FPVMLTLVAKEAVQIRENALEAARVVANKYVSRRAGASNYKLKLRIFPHHILREHKMAVGAGADRISQGMRAAFGKPVGRAARVKPGTKIMSVWVKPEHFEIAKEALRRAAMKMPTPTKIVVEK 165          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_THEPD (50S ribosomal protein L10e OS=Thermofilum pendens (strain Hrk 5) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.119e-22
Identity = 59/124 (47.58%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   31 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 402
            F   + LV      + + ALEAAR   NKY+    G+  F LRV V P H+LR NKM++ AGADRLQ GMR +FG P G  ARV  GQ+++ V+    N  HA+EALRRA  K P   +IIV +
Sbjct:   43 FNTVLKLVVMRPGQIRANALEAARQHANKYLTAKVGEANFFLRVAVFPHHILRENKMMAMAGADRLQDGMRLSFGTPVGRAARVEAGQIVMLVKVDAKNIDHAKEALRRAASKIPLPSRIIVEQ 166          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_PYRIL (50S ribosomal protein L10e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.119e-22
Identity = 58/125 (46.40%), Postives = 75/125 (60.00%), Query Frame = 1
Query:   31 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 405
            F     LV  E+  +  +ALEAAR    KY++KY G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+     +  +  H +EALRRA  K P   +I++  K
Sbjct:   47 FSMVAKLVVEERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVIFYAEFRPEHIAHIKEALRRAASKLPLPTRIVIETK 171          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_METJA (50S ribosomal protein L10e OS=Methanocaldococcus jannaschii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.119e-22
Identity = 56/125 (44.80%), Postives = 78/125 (62.40%), Query Frame = 1
Query:   28 QFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 402
            +FP  V+LV+     +   ALEAAR+A NKY+ K  G+  +  ++RV+P  +LR +KM + AGADR+  GMR AFGKP GT ARV  GQ +L+V         A+EALRRA  K P   +I++ +
Sbjct:   43 EFPVKVNLVATRPIQIRHNALEAARVAANKYLTKMCGRMGYKFQIRVYPHQILREHKMATGAGADRISDGMRLAFGKPIGTAARVKEGQAILTVWVNPDKFPAAKEALRRAAMKLPVPCRIVIEQ 167          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_META3 (50S ribosomal protein L10e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.074e-22
Identity = 59/129 (45.74%), Postives = 78/129 (60.47%), Query Frame = 1
Query:   16 KGVDQFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 402
            KG D FP  VHLV  +   +   ALE+ARI  NKY     G+  +  ++RV+P  VLR NKM S AGADR+  GMR +FGK  GT ARV  GQ ++++     N  HA+EALRR   K P + KI++ +
Sbjct:   39 KGGD-FPVEVHLVVKDDIQIRHNALESARIVGNKYTQNKCGRLGYKFQIRVYPHQVLRENKMASGAGADRISDGMRLSFGKAVGTAARVRKGQKIITISTTPENVIHAKEALRRCNMKMPVKCKIVIGK 166          
The following BLAST results are available for this feature:
BLAST of EY674852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL10_PYRCJ1.266e-2348.8050S ribosomal protein L10e OS=Pyrobaculum calidifo... [more]
RL10_THENV1.654e-2347.2050S ribosomal protein L10e OS=Thermoproteus neutro... [more]
RL10_METTH2.160e-2344.0050S ribosomal protein L10e OS=Methanobacterium the... [more]
RL10_PYRAR3.685e-2346.4050S ribosomal protein L10e OS=Pyrobaculum arsenati... [more]
RL10_PYRAE6.285e-2348.0050S ribosomal protein L10e OS=Pyrobaculum aerophil... [more]
RL10_ARCFU8.208e-2345.9750S ribosomal protein L10e OS=Archaeoglobus fulgid... [more]
RL10_THEPD3.119e-2247.5850S ribosomal protein L10e OS=Thermofilum pendens ... [more]
RL10_PYRIL3.119e-2246.4050S ribosomal protein L10e OS=Pyrobaculum islandic... [more]
RL10_METJA3.119e-2244.8050S ribosomal protein L10e OS=Methanocaldococcus j... [more]
RL10_META34.074e-2245.7450S ribosomal protein L10e OS=Methanococcus aeolic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-D01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674852 ID=EY674852; Name=EY674852; organism=Citrus sinensis; type=EST; length=1053bp
CCACGCGTCCGGAAGAAAGGCGTCGACCAGTTCCCCTTCTGCGTTCACCT
CGTCAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCCC
GTATCGCTTGCAACAAGTACATGGCCAAGTACGCCGGCAAGGATGCTTTC
CATTTGCGAGTGAGGGTGCACCCCTTCCATGTTCTGCGTATTAACAAGAT
GCTTTCGTGTGCTGGGGCTGATAGGCTCCAGACTGGAATGAGGGGTGCTT
TTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTCTTG
CTTTCTGTCCGTTGCAAGGATAGTAACAGCCACCATGCTCAGGAGGCCCT
TCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTCAAAAGATTATTGTCAGCA
GGAAATGGTATGCGTTTTTTTATGCATGACTGCATTCACGTTAAAGTTCT
CTCGTATTTTGCTTGTATTATATGGATTGGGGTGTCACATGGATTAGCAG
ATTAATGGGATTAAGTTGCCTGGGGCTGGTGTCTTCTAGGAGTGAGTAAA
AAAAAAATCTACCTTTTATTTTAATTTTTTTTTCCTTTTTAAAAAAAAAA
ACACCCATCATTTAAATGCCCTGTTGCCTGGTAAATCGCTAGGGTTGGGG
TTTAAAAAAATTTAACCTACGGGTAGGGAAAGGGAACCTTTTGCGGAACA
ACCAATGGGCCAAAAGAAAATTTCCGAATAGATTAACTGTATCGGTAAAA
CGGGGCATTTTTTTTTATTTTTTTTTAAAAACCCAAAAACATAAAAAAAT
TCACCCATTTTAAAAAAATTTTGCTGGGGGTTTTTCTTTTTCCTACAATT
AGAACTTATCTTATTGCGTTTGTCTTATTGAGGGGGTATCTACCCAATAT
TTCCTCTCCTTGCTCCTTTAAATTTCTGGGTGTGAGGGATGAATACCATG
AAGAAAAAAAAATTAATAGTTGTCACATTCAACCGAGTGTGGTGGCCTTT
TTCGTTGTCAGACACGGCTGGCCAGATGCACTTTTTTTGCCCACTTATTT
TAG
back to top