EY674852

Overview
NameEY674852
Unique NameEY674852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1053
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_METLZ (50S ribosomal protein L10e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 9.392e-19
Identity = 51/124 (41.13%), Postives = 74/124 (59.68%), Query Frame = 1
Query:   25 DQFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 396
            + FP  +HL + E   +   A+EAARI  N+ + K  G++ FHL++R +P HVLR +K  + AGADR+  GMR AFGK  GT ARVA  Q + +V         A++AL  + +K P   ++IV
Sbjct:   41 EDFPVAIHLEALEACQIRHTAMEAARINMNRRLMKTVGRNNFHLKIRAYPHHVLREHKQATGAGADRVSEGMRLAFGKAVGTAARVAPRQRVFTVWTTPQYVDQAKDALLHSGYKLPTPVRVIV 164          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_PICTO (50S ribosomal protein L10e OS=Picrophilus torridus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.227e-18
Identity = 48/118 (40.68%), Postives = 76/118 (64.41%), Query Frame = 1
Query:   49 LVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 402
            LV+ E   +   ALEAAR++ N+ +   AG D + L++R +P  V+R +KM + AGADR+ +GMR AFG+P GT ARV  GQ+++  R   +N+   ++AL +A  K P   K++V++
Sbjct:   49 LVAEEACQIRHTALEAARVSVNRKLLDAAGSDNYFLQIRPYPHQVIREHKMATGAGADRISSGMRAAFGRPVGTAARVYPGQIIMVGRVDRNNAKLLKDALHKASIKLPTPCKVVVTK 166          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_METST (50S ribosomal protein L10e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.227e-18
Identity = 49/125 (39.20%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   28 QFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 402
            +FP  V L   E  ++S  +LEAARIA N+Y+ +  GK  + L++R +P H++R N M + AGADR+Q+GMRGAFGK   + A V   Q +++   +  +   A+ AL RA  K P   K+++ +
Sbjct:   30 EFPLEVTLAVKEHTHLSHNSLEAARIAANRYLQRTTGKLGYRLKIRTYPHHIVRENPMATGAGADRVQSGMRGAFGKAVSSEALVRANQKIITAYVQVKDFEKAKVALNRAAMKLPVTCKLVIDK 154          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_METPE (50S ribosomal protein L10e OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.227e-18
Identity = 50/125 (40.00%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   28 QFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 402
            +FP  + L   E   +   ALEAARIA N+ M    G+  FH ++R +P HVLR NK  + AGADR+  GMR AFGK  GT ARV   Q + +V   +     +++ALR   +K P   ++++ R
Sbjct:   42 EFPVEISLEVLESCQIRHTALEAARIAINRKMMDQVGRANFHFKIRTYPHHVLRENKQATGAGADRVSEGMRMAFGKAVGTAARVQPKQKVFTVYTNEQYIEKSKDALRHGGYKLPSPARLVIER 166          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_METBU (50S ribosomal protein L10e OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.602e-18
Identity = 51/124 (41.13%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   31 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 402
            FP  + L++ E+  +   ALEAARI  N+ M   AG+  FH+++RV+P  VLR NK  + AGADR+ +GMR A+GK   T ARV+  Q + ++     +   A++ALRRA  K P    I+V +
Sbjct:   43 FPVKITLLADERCQIRHTALEAARITANRAMTTAAGRSGFHMKLRVYPHEVLRENKQATGAGADRVSSGMRAAYGKNVSTAARVSARQKIFTISVNKEHFIIAKDALRRAGQKLPTPVTIVVDQ 166          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_METAC (50S ribosomal protein L10e OS=Methanosarcina acetivorans GN=rpl10e PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.661e-18
Identity = 53/127 (41.73%), Postives = 74/127 (58.27%), Query Frame = 1
Query:   16 KGVDQFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 396
            K    FP  + L+  EK  +   ALEAARI  N+++    GK  F++++RV+P  V+R NK  + AGADR+ +GMR AFGK  GT ARV   Q + +V  +  N   A+EAL  A  K P   +I+V
Sbjct:   39 KANTSFPVKISLIVEEKCQIRHTALEAARITANRHLVADTGKMGFYMKLRVYPHEVIRENKQATGAGADRVSSGMRRAFGKNVGTAARVKPMQKIFTVAVEKQNFKAAKEALWHAGQKLPTPCRIVV 165          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_METMJ (50S ribosomal protein L10e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.950e-18
Identity = 52/126 (41.27%), Postives = 71/126 (56.35%), Query Frame = 1
Query:   25 DQFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 402
            + +P  + +V  E   +   ALEAARI  N+ + K  G+  FHL++R  P HVLR NK  + AGADR+  GMR AFGK  GT ARV  GQ + SV         A+ +L+R  +K P   +I+  R
Sbjct:   41 EDYPVELSIVVDETCQIRHTALEAARIGINRQLQKEVGRANFHLKIRTFPHHVLRENKQATGAGADRVSEGMRLAFGKAVGTAARVEKGQKVFSVWTSPQYVDKAKVSLKRGIYKLPTPARIVEER 166          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_THESM (50S ribosomal protein L10e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.038e-17
Identity = 50/115 (43.48%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   31 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 375
            F F V L + E   +   ALEAAR   N+Y++K  G+  FH ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +L+VR    +   A  A++RA  KFP
Sbjct:   43 FEFEVSLHTAEPVQIRQNALEAARTQLNRYLSKNVGRSNFHYKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILTVRVNKQHLKFALAAMKRASMKFP 157          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_PYRFU (50S ribosomal protein L10e OS=Pyrococcus furiosus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.946e-17
Identity = 50/115 (43.48%), Postives = 64/115 (55.65%), Query Frame = 1
Query:   31 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 375
            F F V L + E   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:   43 FEFEVSLHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_PYRHO (50S ribosomal protein L10e OS=Pyrococcus horikoshii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.153e-17
Identity = 50/115 (43.48%), Postives = 64/115 (55.65%), Query Frame = 1
Query:   31 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 375
            F F V L + E   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:   43 FEFEVALHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKRDQKILSIRVNRQHLKFAIEGARRAAMKFP 157          
The following BLAST results are available for this feature:
BLAST of EY674852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL10_METLZ9.392e-1941.1350S ribosomal protein L10e OS=Methanocorpusculum l... [more]
RL10_PICTO1.227e-1840.6850S ribosomal protein L10e OS=Picrophilus torridus... [more]
RL10_METST1.227e-1839.2050S ribosomal protein L10e OS=Methanosphaera stadt... [more]
RL10_METPE1.227e-1840.0050S ribosomal protein L10e OS=Methanosphaerula pal... [more]
RL10_METBU1.602e-1841.1350S ribosomal protein L10e OS=Methanococcoides bur... [more]
RL10_METAC4.661e-1841.7350S ribosomal protein L10e OS=Methanosarcina aceti... [more]
RL10_METMJ7.950e-1841.2750S ribosomal protein L10e OS=Methanoculleus maris... [more]
RL10_THESM1.038e-1743.4850S ribosomal protein L10e OS=Thermococcus sibiric... [more]
RL10_PYRFU3.946e-1743.4850S ribosomal protein L10e OS=Pyrococcus furiosus ... [more]
RL10_PYRHO5.153e-1743.4850S ribosomal protein L10e OS=Pyrococcus horikoshi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-D01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674852 ID=EY674852; Name=EY674852; organism=Citrus sinensis; type=EST; length=1053bp
CCACGCGTCCGGAAGAAAGGCGTCGACCAGTTCCCCTTCTGCGTTCACCT
CGTCAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCCC
GTATCGCTTGCAACAAGTACATGGCCAAGTACGCCGGCAAGGATGCTTTC
CATTTGCGAGTGAGGGTGCACCCCTTCCATGTTCTGCGTATTAACAAGAT
GCTTTCGTGTGCTGGGGCTGATAGGCTCCAGACTGGAATGAGGGGTGCTT
TTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTCTTG
CTTTCTGTCCGTTGCAAGGATAGTAACAGCCACCATGCTCAGGAGGCCCT
TCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTCAAAAGATTATTGTCAGCA
GGAAATGGTATGCGTTTTTTTATGCATGACTGCATTCACGTTAAAGTTCT
CTCGTATTTTGCTTGTATTATATGGATTGGGGTGTCACATGGATTAGCAG
ATTAATGGGATTAAGTTGCCTGGGGCTGGTGTCTTCTAGGAGTGAGTAAA
AAAAAAATCTACCTTTTATTTTAATTTTTTTTTCCTTTTTAAAAAAAAAA
ACACCCATCATTTAAATGCCCTGTTGCCTGGTAAATCGCTAGGGTTGGGG
TTTAAAAAAATTTAACCTACGGGTAGGGAAAGGGAACCTTTTGCGGAACA
ACCAATGGGCCAAAAGAAAATTTCCGAATAGATTAACTGTATCGGTAAAA
CGGGGCATTTTTTTTTATTTTTTTTTAAAAACCCAAAAACATAAAAAAAT
TCACCCATTTTAAAAAAATTTTGCTGGGGGTTTTTCTTTTTCCTACAATT
AGAACTTATCTTATTGCGTTTGTCTTATTGAGGGGGTATCTACCCAATAT
TTCCTCTCCTTGCTCCTTTAAATTTCTGGGTGTGAGGGATGAATACCATG
AAGAAAAAAAAATTAATAGTTGTCACATTCAACCGAGTGTGGTGGCCTTT
TTCGTTGTCAGACACGGCTGGCCAGATGCACTTTTTTTGCCCACTTATTT
TAG
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