EY674852

Overview
NameEY674852
Unique NameEY674852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1053
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_METS5 (50S ribosomal protein L10e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.153e-17
Identity = 50/124 (40.32%), Postives = 76/124 (61.29%), Query Frame = 1
Query:   31 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVA-IGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 396
            + F V L++ +   +   ALEAAR+   K M    G +  F+L V  +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+  +G +++++R K  +   A++A + A  K P   +I+V
Sbjct:   43 YDFEVRLLTKQIGQIRHNALEAARVIALKQMTSMVGNETDFYLYVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARITKLGDLIMAIRVKKEHLEFAKKAFKVASSKLPLDTEIVV 166          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_METHJ (50S ribosomal protein L10e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.153e-17
Identity = 49/126 (38.89%), Postives = 71/126 (56.35%), Query Frame = 1
Query:   28 QFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 405
            +FP  V LV  E   +   ALEAAR++ N+ + K  G+  +HL++R +P HVLR NK  + AGADR+  GMR AFGK  GT AR    Q + +V    ++    ++ALR    K P    +++  K
Sbjct:   42 EFPMEVSLVVDESCQIRHSALEAARMSINRKLNKELGRMNYHLKLRTYPHHVLRENKQATGAGADRVSQGMRLAFGKAVGTAARCQQNQKIFTVFSNPASVEKIKDALRHGGHKLPSPTHLVIEMK 167          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_HALMA (50S ribosomal protein L10e OS=Haloarcula marismortui GN=rpl10e PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 6.730e-17
Identity = 49/132 (37.12%), Postives = 75/132 (56.82%), Query Frame = 1
Query:   10 RKKGVDQFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 402
            ++K  D +P  + L+  E   +   +LEA+R++ N+++ K  G++  + + +R  P  VLR NK  + AGADR+  GMR AFGK  GT ARV  G+ L +  C   ++ H +EA RRA  K     +I V R
Sbjct:   39 KQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVER 170          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_THEON (50S ribosomal protein L10e OS=Thermococcus onnurineus (strain NA1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.790e-17
Identity = 48/116 (41.38%), Postives = 66/116 (56.90%), Query Frame = 1
Query:   28 QFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 375
            +F + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V   + +   A EA+RRA  K P
Sbjct:   42 EFQYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVKKDQKILTVWVNEGHLKFALEAMRRAAMKLP 157          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_METBF (50S ribosomal protein L10e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.790e-17
Identity = 51/127 (40.16%), Postives = 75/127 (59.06%), Query Frame = 1
Query:   16 KGVDQFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 396
            K    FP  + L+  EK  +   ALEAARI  N+++ +  GK  +++++RV+P  VLR NK  + AGADR+ +GMR AFGK  GT ARV   Q + +V  +  N   A++AL  A  K P   +I++
Sbjct:   39 KANTSFPIKLSLLVEEKCQIRHTALEAARITANRHLIEDTGKMGYYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKNVGTAARVNPFQKIFTVAVEKQNFVAAKKALWHAGQKLPTPCRIVI 165          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_PYRAB (50S ribosomal protein L10e OS=Pyrococcus abyssi GN=rpl10e PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.340e-16
Identity = 49/115 (42.61%), Postives = 63/115 (54.78%), Query Frame = 1
Query:   31 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 375
            F F V L   +   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:   43 FEFEVALHVSQPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKVLSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_THEGJ (50S ribosomal protein L10e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.363e-16
Identity = 47/116 (40.52%), Postives = 65/116 (56.03%), Query Frame = 1
Query:   28 QFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 375
            +F + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V   + +   A  A+ RAK K P
Sbjct:   42 EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVKKDQKILTVWVNEQHLKFALGAMHRAKMKLP 157          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_SULTO (50S ribosomal protein L10e OS=Sulfolobus tokodaii GN=rpl10e PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 4.363e-16
Identity = 50/122 (40.98%), Postives = 72/122 (59.02%), Query Frame = 1
Query:   31 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 390
            + + + LV+ EK  +   ALEAAR+   K +    G D  F L V  +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+  +G +++  + K  +   A++A   A  K P + KI
Sbjct:   43 YDYELRLVALEKGQIRHNALEAARVLALKQLTNKTGSDQNFALIVLKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARIERLGDIIMIAKVKKEHLEIAKKAFEAAASKIPLKTKI 164          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_SULIY (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.441e-16
Identity = 50/122 (40.98%), Postives = 74/122 (60.66%), Query Frame = 1
Query:   31 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 390
            + + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:   43 YDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_SULIN (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.441e-16
Identity = 50/122 (40.98%), Postives = 74/122 (60.66%), Query Frame = 1
Query:   31 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 390
            + + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:   43 YDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
The following BLAST results are available for this feature:
BLAST of EY674852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL10_METS55.153e-1740.3250S ribosomal protein L10e OS=Metallosphaera sedul... [more]
RL10_METHJ5.153e-1738.8950S ribosomal protein L10e OS=Methanospirillum hun... [more]
RL10_HALMA6.730e-1737.1250S ribosomal protein L10e OS=Haloarcula marismort... [more]
RL10_THEON8.790e-1741.3850S ribosomal protein L10e OS=Thermococcus onnurin... [more]
RL10_METBF8.790e-1740.1650S ribosomal protein L10e OS=Methanosarcina barke... [more]
RL10_PYRAB3.340e-1642.6150S ribosomal protein L10e OS=Pyrococcus abyssi GN... [more]
RL10_THEGJ4.363e-1640.5250S ribosomal protein L10e OS=Thermococcus gammato... [more]
RL10_SULTO4.363e-1640.9850S ribosomal protein L10e OS=Sulfolobus tokodaii ... [more]
RL10_SULIY7.441e-1640.9850S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIN7.441e-1640.9850S ribosomal protein L10e OS=Sulfolobus islandicu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-D01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674852 ID=EY674852; Name=EY674852; organism=Citrus sinensis; type=EST; length=1053bp
CCACGCGTCCGGAAGAAAGGCGTCGACCAGTTCCCCTTCTGCGTTCACCT
CGTCAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCCC
GTATCGCTTGCAACAAGTACATGGCCAAGTACGCCGGCAAGGATGCTTTC
CATTTGCGAGTGAGGGTGCACCCCTTCCATGTTCTGCGTATTAACAAGAT
GCTTTCGTGTGCTGGGGCTGATAGGCTCCAGACTGGAATGAGGGGTGCTT
TTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTCTTG
CTTTCTGTCCGTTGCAAGGATAGTAACAGCCACCATGCTCAGGAGGCCCT
TCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTCAAAAGATTATTGTCAGCA
GGAAATGGTATGCGTTTTTTTATGCATGACTGCATTCACGTTAAAGTTCT
CTCGTATTTTGCTTGTATTATATGGATTGGGGTGTCACATGGATTAGCAG
ATTAATGGGATTAAGTTGCCTGGGGCTGGTGTCTTCTAGGAGTGAGTAAA
AAAAAAATCTACCTTTTATTTTAATTTTTTTTTCCTTTTTAAAAAAAAAA
ACACCCATCATTTAAATGCCCTGTTGCCTGGTAAATCGCTAGGGTTGGGG
TTTAAAAAAATTTAACCTACGGGTAGGGAAAGGGAACCTTTTGCGGAACA
ACCAATGGGCCAAAAGAAAATTTCCGAATAGATTAACTGTATCGGTAAAA
CGGGGCATTTTTTTTTATTTTTTTTTAAAAACCCAAAAACATAAAAAAAT
TCACCCATTTTAAAAAAATTTTGCTGGGGGTTTTTCTTTTTCCTACAATT
AGAACTTATCTTATTGCGTTTGTCTTATTGAGGGGGTATCTACCCAATAT
TTCCTCTCCTTGCTCCTTTAAATTTCTGGGTGTGAGGGATGAATACCATG
AAGAAAAAAAAATTAATAGTTGTCACATTCAACCGAGTGTGGTGGCCTTT
TTCGTTGTCAGACACGGCTGGCCAGATGCACTTTTTTTGCCCACTTATTT
TAG
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