EY674852

Overview
NameEY674852
Unique NameEY674852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1053
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY674852 vs. ExPASy Swiss-Prot
Match: RL10_NATPD (50S ribosomal protein L10e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.716e-12
Identity = 44/121 (36.36%), Postives = 69/121 (57.02%), Query Frame = 1 
Query:   43 VHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 402
            + L+  E+  +   +LEA+R++ N+ M K  G+D  + + +R  P  V+R NK  + AGADR+  GMR AFGK  GT AR+  G+ + ++ C   ++  A++A RRA  K      I V R
Sbjct:   50 ISLIVDEEVQIRHGSLEASRLSANRRMLKELGEDGDYKMILRKFPHQVIRENKQATGAGADRVSDGMRQAFGKIVGTAARINKGERVFTIWCHPEDADAAKDAFRRAYNKISPPCTIKVER 170
The following BLAST results are available for this feature:
BLAST of EY674852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL10_NATPD1.716e-1236.3650S ribosomal protein L10e OS=Natronomonas pharaon... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-D01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674852 ID=EY674852; Name=EY674852; organism=Citrus sinensis; type=EST; length=1053bp
CCACGCGTCCGGAAGAAAGGCGTCGACCAGTTCCCCTTCTGCGTTCACCT
CGTCAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCCC
GTATCGCTTGCAACAAGTACATGGCCAAGTACGCCGGCAAGGATGCTTTC
CATTTGCGAGTGAGGGTGCACCCCTTCCATGTTCTGCGTATTAACAAGAT
GCTTTCGTGTGCTGGGGCTGATAGGCTCCAGACTGGAATGAGGGGTGCTT
TTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTCTTG
CTTTCTGTCCGTTGCAAGGATAGTAACAGCCACCATGCTCAGGAGGCCCT
TCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTCAAAAGATTATTGTCAGCA
GGAAATGGTATGCGTTTTTTTATGCATGACTGCATTCACGTTAAAGTTCT
CTCGTATTTTGCTTGTATTATATGGATTGGGGTGTCACATGGATTAGCAG
ATTAATGGGATTAAGTTGCCTGGGGCTGGTGTCTTCTAGGAGTGAGTAAA
AAAAAAATCTACCTTTTATTTTAATTTTTTTTTCCTTTTTAAAAAAAAAA
ACACCCATCATTTAAATGCCCTGTTGCCTGGTAAATCGCTAGGGTTGGGG
TTTAAAAAAATTTAACCTACGGGTAGGGAAAGGGAACCTTTTGCGGAACA
ACCAATGGGCCAAAAGAAAATTTCCGAATAGATTAACTGTATCGGTAAAA
CGGGGCATTTTTTTTTATTTTTTTTTAAAAACCCAAAAACATAAAAAAAT
TCACCCATTTTAAAAAAATTTTGCTGGGGGTTTTTCTTTTTCCTACAATT
AGAACTTATCTTATTGCGTTTGTCTTATTGAGGGGGTATCTACCCAATAT
TTCCTCTCCTTGCTCCTTTAAATTTCTGGGTGTGAGGGATGAATACCATG
AAGAAAAAAAAATTAATAGTTGTCACATTCAACCGAGTGTGGTGGCCTTT
TTCGTTGTCAGACACGGCTGGCCAGATGCACTTTTTTTGCCCACTTATTT
TAG
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