EY674849

Overview
NameEY674849
Unique NameEY674849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1051
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674849 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.214e-19
Identity = 49/94 (52.13%), Postives = 59/94 (62.77%), Query Frame = 1
Query:  106 PVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTD 381
            P+T+  A++CG V+  +APCI +L       P  CCSGV SLN  ARTTPDRQ AC CL  A   +  I    AAGLP  CGV IPYKIS +T+
Sbjct:   20 PITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTN 113          
BLAST of EY674849 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 7.160e-19
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1
Query:  121 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTD 381
            ++CG V   +A CI +LR  G  P   CC+GV++L  +A TT DR+ AC CL  A  TI G+   +AAGLP++CGV IPYKISPST+
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAA-CCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTN 86          
BLAST of EY674849 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.721e-18
Identity = 44/89 (49.44%), Postives = 59/89 (66.29%), Query Frame = 1
Query:  118 AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTD 381
            A+TC  VT +L PC+ +L+  G  PPP  CC+GVRSL  AA+T  DR+ ACNC+K A    + +   VAA L SQCGVR+ Y +SP+ +
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVN 89          
BLAST of EY674849 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.721e-18
Identity = 48/88 (54.55%), Postives = 56/88 (63.64%), Query Frame = 1
Query:  118 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTD 381
            A++CG V+ +LA CI +L   G  P   CCSGV SLN  ARTTPDRQ AC CL  A   +  I    AAGLP  CGV IPYKIS +T+
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPVPTA-CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTN 112          
BLAST of EY674849 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.721e-18
Identity = 44/89 (49.44%), Postives = 59/89 (66.29%), Query Frame = 1
Query:  118 AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTD 381
            A+TC  VT +L PC+ +L+  G  PPP  CC+GVRSL  AA+T  DR+ ACNC+K A    + +   VAA L SQCGVR+ Y +SP+ +
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVN 89          
BLAST of EY674849 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.553e-18
Identity = 44/88 (50.00%), Postives = 56/88 (63.64%), Query Frame = 1
Query:  118 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTD 381
            AITCGQV+++L PC  + +  G  P   CCSGV+ L G AR+T D+QA C CLK   G     +   AAG+PS+CGV +PY IS S D
Sbjct:   26 AITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLKSVAGAYNAGR---AAGIPSRCGVSVPYTISASVD 110          
BLAST of EY674849 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.553e-18
Identity = 48/94 (51.06%), Postives = 60/94 (63.83%), Query Frame = 1
Query:  106 PVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTD 381
            P+T+  A++CG V+  +APCI +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A  +   +    AAGLP  CGV IPYKIS ST+
Sbjct:   20 PITSNAALSCGTVSGYVAPCIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTN 112          
BLAST of EY674849 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.641e-18
Identity = 48/89 (53.93%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  118 AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTD 381
            AI+  QV +SL PC+ ++R     P PP  C G+RSL  AAR   DRQAAC C+K     I  I   VAAGLP QC V IPYKISPS D
Sbjct:   27 AISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSID 115          
BLAST of EY674849 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.034e-17
Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 1
Query:  106 PVT--NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNV----AAGLPSQCGVRIPYKISPSTD 381
            P+T   A+TCG V +++APCI ++  GG  P   CC+GV  LN  ARTTPDRQ AC CL+ A    R + PN+    AAG+P  CGV +P+ IS +T+
Sbjct:   20 PITANRALTCGTVNSNVAPCIGYITQGGTLPGA-CCTGVSKLNSMARTTPDRQQACRCLETA---ARALGPNLNAGRAAGIPKACGVSVPFPISTNTN 113          
BLAST of EY674849 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.350e-17
Identity = 46/88 (52.27%), Postives = 56/88 (63.64%), Query Frame = 1
Query:  118 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTD 381
            A++CG V+ +LA CI +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A  +   +    AAGLP  CGV IPYKIS ST+
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTN 112          
The following BLAST results are available for this feature:
BLAST of EY674849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTPD_BRAOT3.214e-1952.13Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP3_VITSX7.160e-1951.72Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP_AMACA2.721e-1849.44Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP3_BRANA2.721e-1854.55Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP1_AMAHP2.721e-1849.44Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP8_HORVU3.553e-1850.00Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP2_BRANA3.553e-1851.06Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP6_GOSHI4.641e-1853.93Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTPA_BRAOT1.034e-1747.96Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTPB_BRAOT1.350e-1752.27Non-specific lipid-transfer protein B OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-C10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674849 ID=EY674849; Name=EY674849; organism=Citrus sinensis; type=EST; length=1051bp
CCACGCGTCCGCTAGCTATAACCAAGCACATTTCCTCCCTGAAGGATCCT
CATGGCTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGA
CTGCCCCGGTGACTAATGCCATAACATGCGGGCAGGTGACAGCCTCCTTG
GCTCCATGCATCCCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCGCC
ATGCTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTG
ACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTACGGAACAATCCGC
GGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGAGTCAG
AATTCCTTACAAGATCAGCCCCAGCACCGACTGGCTCTAGGGTCAGGTGA
AGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAAT
AAATAAATAAAGAATAATCTATGTTAATTTCTTTTGTCCGAACGAGTCTC
CACTTGTATGAGTTTCACTCTCATGTCATGGTTTGTATATTTGCTTTTTA
TGTCATATTAAAAATAAGGTAAACGCCAATCTGTGTTTTAAGTGATTAAT
TTATTATTTATTTTTTGGGGTTATTAAAAAAAAAAAAAGGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAGGGGGGGGCCGCCC
TCTTTAAAGGAATCCAAAGCTTTAAATTAACCCAGGGATTGAGAAGTTCA
AAACCCTCTTTTTTTTAGGGGCCCCCAAAATTTTAAATTTTCCTGGGCCG
CTCTTTTTAAAAACCTTCGGGGGAGGGGGAAAAAACCCTGGGGCTTAACC
CCAAATTTTAAATCCCTCCTGGGGAACAACATCCCCCCCTTTTCTTCCCC
AACGGGGAAGAATAAATAAAAAAAAAAAAGCGCCCCCCCGCACCAGATAA
TCCCCCCTTTTCCCCCAAAAAATATTTGCGCCCCACCACAACTAATGAGA
AAGGGGGGGAAAAAAGGGGGGAGAACAACCCACCCCGCCCCCTCTGTTAA
C
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