EY674832

Overview
NameEY674832
Unique NameEY674832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length982
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.912e-68
Identity = 111/157 (70.70%), Postives = 134/157 (85.35%), Query Frame = 1
Query:   13 MPSSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483
            M SS++SS  VAT  RA+ AQASMV PFTGLKS+++FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++
Sbjct:    1 MASSIVSSAAVAT--RANGAQASMVGPFTGLKSTASFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAW 155          

HSP 2 Score: 41.9726 bits (97), Expect = 3.912e-68
Identity = 18/25 (72.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query:  482 FVRIIGFDNKRQVQCISFLAANPPG 556
            ++RIIGFDN RQVQCISF+A  P G
Sbjct:  155 WIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 5.104e-68
Identity = 114/157 (72.61%), Postives = 126/157 (80.25%), Query Frame = 1
Query:   13 MPSSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483
            M SSMISS  V T NRA    A  VAPFTGLKS + FP T+KTNNDI SIASNGGRVQCM+VWP TG KKFETLSYLP L D  L KE+ YLLR GWIPCLEFELE G+VYRE+H SPGYYDGRYWTMWKLP++GCTDA+QVLKE+ E +  YP+ F
Sbjct:    1 MASSMISSPAVTTVNRAG---AGTVAPFTGLKSMAGFP-TRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPVFGCTDASQVLKELQEAKTAYPNGF 153          

HSP 2 Score: 44.669 bits (104), Expect = 5.104e-68
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 2
Query:  482 FVRIIGFDNKRQVQCISFLAANPP 553
            F+RIIGFDN RQVQCISF+A  PP
Sbjct:  153 FIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 6.654e-68
Identity = 111/157 (70.70%), Postives = 134/157 (85.35%), Query Frame = 1
Query:   13 MPSSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483
            M SS++SS  VAT  R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++
Sbjct:    1 MASSVMSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAW 155          

HSP 2 Score: 41.9726 bits (97), Expect = 6.654e-68
Identity = 18/25 (72.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query:  482 FVRIIGFDNKRQVQCISFLAANPPG 556
            ++RIIGFDN RQVQCISF+A  P G
Sbjct:  155 WIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 6.654e-68
Identity = 111/157 (70.70%), Postives = 134/157 (85.35%), Query Frame = 1
Query:   13 MPSSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483
            M SS++SS  VAT  R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++
Sbjct:    1 MASSVMSSAAVAT--RGNGAQASMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAW 155          

HSP 2 Score: 41.9726 bits (97), Expect = 6.654e-68
Identity = 18/25 (72.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query:  482 FVRIIGFDNKRQVQCISFLAANPPG 556
            ++RIIGFDN RQVQCISF+A  P G
Sbjct:  155 WIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 8.672e-68
Identity = 108/159 (67.92%), Postives = 136/159 (85.53%), Query Frame = 1
Query:   13 MPSSMISSTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483
            M SSM+S+  VAT  A+R++ AQASMVAPFTGLKS SAFP T+K++ND++++ SNGG+VQCM+VWPP G KKFETLSYLPPLS+E+LLKE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F
Sbjct:    1 MASSMLSNAAVATTAASRSAGAQASMVAPFTGLKSVSAFPVTRKSSNDLSTVPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAF 159          

HSP 2 Score: 41.5874 bits (96), Expect = 8.672e-68
Identity = 17/23 (73.91%), Postives = 20/23 (86.96%), Query Frame = 2
Query:  482 FVRIIGFDNKRQVQCISFLAANP 550
            F+RIIGFDN RQVQC+SF+A  P
Sbjct:  159 FIRIIGFDNVRQVQCVSFIAYKP 181          
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.924e-67
Identity = 107/157 (68.15%), Postives = 124/157 (78.98%), Query Frame = 1
Query:   13 MPSSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483
            M SSM+S+  +AT    + AQASMVAPF GLKS + FP TKK++ND +S+ SNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YLL  GWIPC+EFELE  +VYRE+H SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F
Sbjct:    1 MASSMLSNAAMATTAATAGAQASMVAPFNGLKSFATFPITKKSSNDFSSLPSNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAF 157          

HSP 2 Score: 46.2098 bits (108), Expect = 1.924e-67
Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query:  482 FVRIIGFDNKRQVQCISFLAANPPG 556
            F+RIIGFDNKRQVQC+SF+A  P G
Sbjct:  157 FIRIIGFDNKRQVQCVSFIAYKPAG 181          
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.509e-67
Identity = 110/155 (70.97%), Postives = 128/155 (82.58%), Query Frame = 1
Query:   19 SSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483
            +SMISS+ V T +RAS  Q++ VAPF GLKS + FP  KK N DITSI SNGGRV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YLLR GW+PCLEFELEKG+VYREH+ SPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV   YP +F
Sbjct:    2 ASMISSSAVTTVSRASTVQSAAVAPFGGLKSMTGFPV-KKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAF 155          

HSP 2 Score: 42.3578 bits (98), Expect = 2.509e-67
Identity = 19/23 (82.61%), Postives = 20/23 (86.96%), Query Frame = 2
Query:  482 FVRIIGFDNKRQVQCISFLAANP 550
            FVRIIGFDN RQVQCISF+A  P
Sbjct:  155 FVRIIGFDNVRQVQCISFIAHTP 177          
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 2.509e-67
Identity = 113/157 (71.97%), Postives = 131/157 (83.44%), Query Frame = 1
Query:   13 MPSSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483
            M SSM+ S+  AT  RAS AQ+SMVAPFTGLKS+SAFP T+K N D++ + SNGGRVQCMKVWP  G+KKFETLSYLP + DEAL+K+I YLLRS WIPCLEF   KG+V+RE+H SPGYYDGRYWTMWKLPM+GCTDA QV KEV E +KEYPH+F
Sbjct:    1 MVSSMMVSSA-ATFTRASPAQSSMVAPFTGLKSASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEF-CPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAF 155          

HSP 2 Score: 44.669 bits (104), Expect = 2.509e-67
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query:  482 FVRIIGFDNKRQVQCISFLAANPPG 556
            F+RIIGFDN RQVQCISF+A  P G
Sbjct:  155 FIRIIGFDNNRQVQCISFIAYKPTG 179          
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 3.272e-67
Identity = 110/158 (69.62%), Postives = 133/158 (84.18%), Query Frame = 1
Query:   13 MPSSMISSTTVATANRASLAQA-SMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483
            M SS+ISS  VAT  R ++ QA SM+APFTGLKS++ FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP L+DE LLKE+ YLL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++
Sbjct:    1 MASSVISSAAVAT--RTNVTQAGSMIAPFTGLKSAATFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAW 156          

HSP 2 Score: 41.9726 bits (97), Expect = 3.272e-67
Identity = 18/25 (72.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query:  482 FVRIIGFDNKRQVQCISFLAANPPG 556
            ++RIIGFDN RQVQCISF+A  P G
Sbjct:  156 WIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 3.272e-67
Identity = 110/155 (70.97%), Postives = 128/155 (82.58%), Query Frame = 1
Query:   19 SSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483
            +SMISS+ V T +RAS  Q++ VAPF GLKS + FP  KK N DITSI SNGGRV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YLLR GW+PCLEFELEKG+VYREH+ SPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV   YP +F
Sbjct:    2 ASMISSSAVTTVSRASRGQSAAVAPFGGLKSMTGFPV-KKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAF 155          

HSP 2 Score: 42.3578 bits (98), Expect = 3.272e-67
Identity = 19/23 (82.61%), Postives = 20/23 (86.96%), Query Frame = 2
Query:  482 FVRIIGFDNKRQVQCISFLAANP 550
            FVRIIGFDN RQVQCISF+A  P
Sbjct:  155 FVRIIGFDNVRQVQCISFIAHTP 177          
The following BLAST results are available for this feature:
BLAST of EY674832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RBSB_SOLTU3.912e-6870.70Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS_GLYTO5.104e-6872.61Ribulose bisphosphate carboxylase small chain, chl... [more]
RBSC_SOLTU6.654e-6870.70Ribulose bisphosphate carboxylase small chain 2C, ... [more]
RBSA_SOLTU6.654e-6870.70Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS6_MESCR8.672e-6867.92Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS1_AMAHP1.924e-6768.15Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_PEA2.509e-6770.97Ribulose bisphosphate carboxylase small chain 3A, ... [more]
RBS_MUSAC2.509e-6771.97Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOLTU3.272e-6769.62Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS2_PEA3.272e-6770.97Ribulose bisphosphate carboxylase small chain 3C, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-B03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674832 ID=EY674832; Name=EY674832; organism=Citrus sinensis; type=EST; length=982bp
GAGCAAGTACCAATGCCTTCCTCAATGATCTCATCGACCACCGTTGCCAC
CGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCG
GCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGAC
ATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTG
GCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCAC
TGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGC
TGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGA
GCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGA
AGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTT
GGGGAGGTCCAGAAGGAATACCCACATTCATTTCGTCCGAATTATCGGAT
TTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAACCCA
CCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGGCAATTG
GTTGAATATATTATGGGAAACCCCCATAATGATCATTCAAATTAAGGGGG
GGTCCGGTTGGGGTTTAATTTGGAACTAAGGCGGCCGGTTGGCGCTGCCC
CAACTTTTTAAGAAAAAAGTATAAGAGGAAAAAATAAATAAATAGAGGAT
ATGAATAAGCAAAAAAAAAATAAAATAAGGGGGGGGGCCCCCCTCAAAGA
AATCAAACGCAAAAAAACCCCGGGGCGGGGCGACAGCTAAAACCCCTTTT
TATAAAGTGGGCCCCCAAAAATATAAATTTTCAGGGGGGGCCGGCTTTTT
TTAAAAACACTGGGGGGGGGGGGGGGGAAAAAAAACCGGGGGGGTATTCC
CCCACACAATTAATACACCTCCCTGATGGCAC
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