EY674769

Overview
NameEY674769
Unique NameEY674769
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length951
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: CD48B_ARATH (Cell division control protein 48 homolog B OS=Arabidopsis thaliana GN=CDC48B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.045e-12
Identity = 34/96 (35.42%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   28 TGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 315
            T +D     + ++ + ATNRP  +D   +RPGR D  LY+  PD + R +I  VH+    L +DV+  ++   T  F+GA++  L  ESG +S+R+
Sbjct:  416 TEMDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARFEILQVHTRNMTLGDDVDLRKIAEETDLFTGAELEGLCRESGTVSLRE 511          

HSP 2 Score: 24.2534 bits (51), Expect = 1.045e-12
Identity = 14/37 (37.84%), Postives = 20/37 (54.05%), Query Frame = 3
Query:  393 SYRRRATRNVNKVFSFEKKKALGL---GTWKLGPLEL 494
            S+R+ A R+ +K     KKKA       +W+LG L L
Sbjct:  544 SFRKAAKRSDSKPIPINKKKATSTVFGFSWQLGVLSL 580          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.132e-12
Identity = 38/108 (35.19%), Postives = 62/108 (57.41%), Query Frame = 1
Query:   34 IDRFS----LRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 345
            +D FS    L   V+FI ATN P+ LD    RPGR DR +++ LPD + R+ I   H+    L +DV+   +   T GF+GAD+ NL+N++ + + +   + +  +D+
Sbjct:  394 LDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIARGTSGFAGADLANLINQAAVYASKNLSTAVSMRDL 501          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.132e-12
Identity = 37/106 (34.91%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVD 351
            +D F     V  I ATNR D LD   +R GR+DR++   +P+ + R +I  +HS    ++ DVN+EEL   T  F+GA  + +  E+GI+++R+G +++  +D ++
Sbjct:  282 LDGFQPTTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGIIALRRGATELTHEDYME 387          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.132e-12
Identity = 39/110 (35.45%), Postives = 57/110 (51.82%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 363
            +D F   + +I I ATN P  LD   VRPGR DR + +  PD + R QI + H      ++DV+   +   T GFSGAD+ NLVN + + +   G   +   D+    D+
Sbjct:  350 LDGFKQNEGIIVIAATNFPQSLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMLKVLKSDDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGAKAVTMNDLEYAKDR 459          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.479e-12
Identity = 39/103 (37.86%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 342
            +D F +   V  I ATNR D LD   +RPGR+DR++   LPD +Q+  IF V ++   L+++V+ E+ V R    SGA+I+++  E+G+ ++RK    I  +D
Sbjct:  281 MDGFDVSVNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDYVSRPDKLSGAEIQSICQEAGMHAIRKNRYVILPKD 383          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: FTSH9_ORYSJ (Cell division protease ftsH homolog 9, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH9 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.479e-12
Identity = 36/99 (36.36%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKI 330
            +D F   + +I + ATN PD LD    RPGR DR + +  PD + R +I +++   K ++ DV+   +   T GF+GAD+ NLVN + I +  +G  K+
Sbjct:  454 MDGFEQNEGIIVMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPVSSDVDVNAIARSTPGFNGADLANLVNIAAIKAAVEGADKL 552          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: CDC48_SCHPO (Cell division cycle protein 48 OS=Schizosaccharomyces pombe GN=cdc48 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.479e-12
Identity = 35/109 (32.11%), Postives = 65/109 (59.63%), Query Frame = 1
Query:   28 TGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 354
            T +D    R  V+ + ATNRP+ +D    R GR DR + +G+PD   R++I  +H+   +LA+DV+ E++   T G+ G+D+ +L +E+ +  +R      ++ D++D+
Sbjct:  350 TLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGYVGSDLASLCSEAAMQQIR------EKMDMIDL 452          

HSP 2 Score: 68.5514 bits (166), Expect = 6.213e-11
Identity = 34/95 (35.79%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   28 TGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 312
            T +D  + ++ V  I ATNRPD++D   +RPGR+D+ +Y+ LPD + R  I         +AEDV+   +   T GFSGAD+  +V  +  ++++
Sbjct:  625 TEMDGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVAKATHGFSGADLEFVVQRAVKLAIK 719          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: CDC48_EMENI (Cell division control protein 48 OS=Emericella nidulans GN=cdc48 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.479e-12
Identity = 36/109 (33.03%), Postives = 63/109 (57.80%), Query Frame = 1
Query:   28 TGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 354
            T +D    R  V+ + ATNRP+ +D    R GR DR + IG+PD   R++I  +H+   +L EDV+ E +   T G+ G+D+ +L +E+ +  +R      ++ D++D+
Sbjct:  355 TLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDIGIPDPTGRLEILSIHTKNMKLGEDVDLETIAAETHGYVGSDLASLCSEAAMQQIR------EKMDLIDL 457          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.931e-12
Identity = 36/106 (33.96%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVD 351
            +D F     V  I ATNR D LD   +R GR+DR++   +P+ + R +I  +HS    ++ DVN+EEL   T  F+GA  + +  E+G++++R+G +++  +D ++
Sbjct:  317 LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYME 422          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.931e-12
Identity = 36/106 (33.96%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVD 351
            +D F     V  I ATNR D LD   +R GR+DR++   +P+ + R +I  +HS    ++ DVN+EEL   T  F+GA  + +  E+G++++R+G +++  +D ++
Sbjct:  317 LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYME 422          
The following BLAST results are available for this feature:
BLAST of EY674769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
CD48B_ARATH1.045e-1235.42Cell division control protein 48 homolog B OS=Arab... [more]
YME1_SCHPO1.132e-1235.19Protein YME1 homolog OS=Schizosaccharomyces pombe ... [more]
PR6AB_XENLA1.132e-1234.9126S protease regulatory subunit 6A-B OS=Xenopus la... [more]
FTSH4_ORYSJ1.132e-1235.45Cell division protease ftsH homolog 4, mitochondri... [more]
PRS6B_DICDI1.479e-1237.8626S protease regulatory subunit 6B homolog OS=Dict... [more]
FTSH9_ORYSJ1.479e-1236.36Cell division protease ftsH homolog 9, chloroplast... [more]
CDC48_SCHPO1.479e-1232.11Cell division cycle protein 48 OS=Schizosaccharomy... [more]
CDC48_EMENI1.479e-1233.03Cell division control protein 48 OS=Emericella nid... [more]
PRS6A_RAT1.931e-1233.9626S protease regulatory subunit 6A OS=Rattus norve... [more]
PRS6A_HUMAN1.931e-1233.9626S protease regulatory subunit 6A OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-001-C01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674769 ID=EY674769; Name=EY674769; organism=Citrus sinensis; type=EST; length=951bp
CTTACCATCCCATGTACCAAGGAAAGAACTGGTATTGATCGGTTTTCACT
TAGACAAGCTGTCATATTCATCTGCGCTACCAATAGGCCAGATGAATTGG
ACCTTGAGTTTGTCCGCCCTGGACGTATTGACCGCCGTTTATACATTGGT
TTGCCTGATGCAAAGCAACGAGTGCAAATATTTGATGTGCACAGTGCAGG
AAAGCAACTTGCAGAAGATGTAAACTTTGAAGAGCTTGTCTTCCGTACAG
TTGGTTTTTCTGGGGCAGATATTAGAAATCTTGTGAATGAATCAGGAATA
ATGTCGGTGAGAAAAGGACATTCCAAAATCCAGCAACAAGACATCGTTGA
TGTGCTAGATAAACAATTTGCTTTGAGGGTATGGGTGTACCTTCTTACAG
AAGAAGAGCAACCAGAAATGTGAACAAAGTGTTTTCTTTTGAAAAAAAAA
AGGCTCTTGGGCTTGGTACATGGAAGCTGGGGCCCTTAGAATTAGCTCCA
CCTTTTTTCCTCGATTTGATTTGGCATGCATTTTCTCAAGCTCCCAACCT
GGGGGCAAGGGAAACTGGCAAAATTCTGTGGTTTTTTCCCTCGTGAAGAA
CACAAAAAATCAAGGGTTAAACAACCTTTTGGCTACTAGAAAAATGCAAA
TGGGAGGGGGGCCATGGGGGGACAAAGGGGCGGAACGACTTTGTGTGTGG
GCAAATATGTAAACTGAAGGAAAGGAAGGGAGGCCACTTAGAAAAAAAAA
TTAAAATTTGGCTAGGGAAATAGGGGGTATTTTCCCACCAAAAAGGCAGG
TGTGGGGGGGTTAGGCGGTTTTTACAAAAAAAGAATTTGAGATTTTTTGG
AGTATAACACAAAAAAGTACAGAAATGGGGTTGTTATTTGAAAAAATAAT
AAGGGGGGATATCTCTCTTCTTGACACCTACCCCCCAATTTTTTTTACAT
T
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