EY674769

Overview
NameEY674769
Unique NameEY674769
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length951
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: CD48D_ARATH (Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.931e-12
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   28 TGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSK 327
            T +D  + ++ V  I ATNRPD +D   +RPGR+D+ +YI LPD + R QIF        +A+DV+   L   T GFSGADI  +   S   ++R+   K
Sbjct:  610 TEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALAKYTQGFSGADITEICQRSCKYAIRENIEK 709          

HSP 2 Score: 72.0182 bits (175), Expect = 5.620e-12
Identity = 39/113 (34.51%), Postives = 65/113 (57.52%), Query Frame = 1
Query:   28 TGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 366
            T +D    R  VI + ATNRP+ +D    R GR DR + IG+PD   R+++  +H+   +LAEDV+ E +   T G+ GAD+  L  E+ +  +R      ++ D++D+ D++
Sbjct:  334 TLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGYVGADLAALCTEAALQCIR------EKMDVIDLDDEE 440          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: TBP7_YEAST (TAT-binding homolog 7 OS=Saccharomyces cerevisiae GN=YTA7 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.523e-12
Identity = 39/104 (37.50%), Postives = 58/104 (55.77%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF-EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 342
            +D    R  VI I ATNRPD +D    RPGR DR  Y  LPD K R +I  + +         NF ++L F T G+ GAD+R+L  E+ ++S+++   +I + +
Sbjct:  546 MDGMDNRGQVIVIGATNRPDAVDPALRRPGRFDREFYFPLPDVKARFKILQIQTRKWSSPLSTNFIDKLAFLTKGYGGADLRSLCTEAALISIQRSFPQIYRSN 649          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.523e-12
Identity = 34/110 (30.91%), Postives = 61/110 (55.45%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 363
            +D F  R  +  + ATNRPD LD   +RPGR+DR++   LPD   R  I  +H+    +  D+ ++ L       +GA+IR++  E+G+ ++R       ++D ++ ++K
Sbjct:  308 LDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAINK 417          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.523e-12
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 342
            +D F     V  I ATNR D LD   +RPGR+DR++   LPD +Q+  IF   +A   L+E+V+ EE V R    SGADI  +  E+G+ +VR+    +  +D
Sbjct:  293 MDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEFVARPDRVSGADINAICQEAGMNAVRENRYIVLPKD 395          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.295e-12
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 363
            +D F  R  V  I ATNRPD LD   +RPGR DR + I  PD   R++IF +H+  K   + V+  E+        GADI+ +  E+G+ ++R+G   +  +D  + L K
Sbjct:  279 MDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEIAAPDEDGRLEIFKIHT-DKMNIKSVDLREIAKMAENMVGADIKAVCTEAGMFAIREGREYVTTKDFKEALLK 387          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.295e-12
Identity = 36/103 (34.95%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 342
            +D FS  + +  I ATNR D LD   +R GR+DR++    P  + R +I  +HS    +  DVNFEEL   T  F+GA ++ +  E+G++++R+  +++  +D
Sbjct:  302 LDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 404          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.295e-12
Identity = 36/112 (32.14%), Postives = 62/112 (55.36%), Query Frame = 1
Query:   28 TGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 363
            T +D F  R  +  + ATNRP+ LD   +RPGRIDR++   LPD + R  IF +HS    +   + +E +       +GA++R++  E+G+ ++R       ++D +  +DK
Sbjct:  338 TQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.295e-12
Identity = 38/104 (36.54%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 345
            +D F     V  I ATNR D LD   +RPGR+DR++   LPD +Q+  +F    +   L++DV+ E+ V R    SGADI ++  E+G+ +VR+    +  +D+
Sbjct:  292 MDGFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDWVARPDKISGADINSICQEAGMQAVRENRYVVLTKDL 395          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.295e-12
Identity = 36/103 (34.95%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 342
            +D FS  + +  I ATNR D LD   +R GR+DR++    P  + R +I  +HS    +  DVNFEEL   T  F+GA ++ +  E+G++++R+  +++  +D
Sbjct:  307 LDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHED 409          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.295e-12
Identity = 36/103 (34.95%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 342
            +D FS  + +  I ATNR D LD   +R GR+DR++    P  + R +I  +HS    +  DVNFEEL   T  F+GA ++ +  E+G++++R+  +++  +D
Sbjct:  302 LDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 404          
The following BLAST results are available for this feature:
BLAST of EY674769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
CD48D_ARATH1.931e-1240.00Cell division control protein 48 homolog D OS=Arab... [more]
TBP7_YEAST2.523e-1237.50TAT-binding homolog 7 OS=Saccharomyces cerevisiae ... [more]
PRS7_CAEEL2.523e-1230.9126S protease regulatory subunit 7 OS=Caenorhabditi... [more]
PRS6B_MANSE2.523e-1239.8126S protease regulatory subunit 6B OS=Manduca sext... [more]
PSMR_METVS3.295e-1236.36Proteasome-activating nucleotidase OS=Methanococcu... [more]
PS6AA_ARATH3.295e-1234.9526S protease regulatory subunit 6A homolog A OS=Ar... [more]
PRS7_YEAST3.295e-1232.1426S protease regulatory subunit 7 homolog OS=Sacch... [more]
PRS6B_CAEEL3.295e-1236.54Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PRS6A_ORYSJ3.295e-1234.9526S protease regulatory subunit 6A homolog OS=Oryz... [more]
PRS6A_BRACM3.295e-1234.9526S protease regulatory subunit 6A homolog OS=Bras... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-001-C01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674769 ID=EY674769; Name=EY674769; organism=Citrus sinensis; type=EST; length=951bp
CTTACCATCCCATGTACCAAGGAAAGAACTGGTATTGATCGGTTTTCACT
TAGACAAGCTGTCATATTCATCTGCGCTACCAATAGGCCAGATGAATTGG
ACCTTGAGTTTGTCCGCCCTGGACGTATTGACCGCCGTTTATACATTGGT
TTGCCTGATGCAAAGCAACGAGTGCAAATATTTGATGTGCACAGTGCAGG
AAAGCAACTTGCAGAAGATGTAAACTTTGAAGAGCTTGTCTTCCGTACAG
TTGGTTTTTCTGGGGCAGATATTAGAAATCTTGTGAATGAATCAGGAATA
ATGTCGGTGAGAAAAGGACATTCCAAAATCCAGCAACAAGACATCGTTGA
TGTGCTAGATAAACAATTTGCTTTGAGGGTATGGGTGTACCTTCTTACAG
AAGAAGAGCAACCAGAAATGTGAACAAAGTGTTTTCTTTTGAAAAAAAAA
AGGCTCTTGGGCTTGGTACATGGAAGCTGGGGCCCTTAGAATTAGCTCCA
CCTTTTTTCCTCGATTTGATTTGGCATGCATTTTCTCAAGCTCCCAACCT
GGGGGCAAGGGAAACTGGCAAAATTCTGTGGTTTTTTCCCTCGTGAAGAA
CACAAAAAATCAAGGGTTAAACAACCTTTTGGCTACTAGAAAAATGCAAA
TGGGAGGGGGGCCATGGGGGGACAAAGGGGCGGAACGACTTTGTGTGTGG
GCAAATATGTAAACTGAAGGAAAGGAAGGGAGGCCACTTAGAAAAAAAAA
TTAAAATTTGGCTAGGGAAATAGGGGGTATTTTCCCACCAAAAAGGCAGG
TGTGGGGGGGTTAGGCGGTTTTTACAAAAAAAGAATTTGAGATTTTTTGG
AGTATAACACAAAAAAGTACAGAAATGGGGTTGTTATTTGAAAAAATAAT
AAGGGGGGATATCTCTCTTCTTGACACCTACCCCCCAATTTTTTTTACAT
T
back to top