EY674769

Overview
NameEY674769
Unique NameEY674769
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length951
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.761e-16
Identity = 43/110 (39.09%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 363
            +D F+    V  I ATNR D LD   +RPGR DR + + LPD + R +IF+++    ++ +++N E L   + GFSGADI+N+  E+  M++R G +K+  +D+VD + K
Sbjct:  265 LDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITK 374          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.761e-16
Identity = 42/103 (40.78%), Postives = 64/103 (62.14%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 342
            +D F  R  V  I ATNR + LD   +RPGRIDR++   LPD K + +IF +H++   LA+DV  +EL+      SGADI+ +  E+G+M++R+   K+  +D
Sbjct:  316 LDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.912e-16
Identity = 43/110 (39.09%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 363
            +D F  R  V  + ATNRPD LD   +RPGR DR + + LP+   R +I  +H++G  LAE+V+ E L   T G SGAD++ +  E+G+ ++R    ++   D +D +DK
Sbjct:  282 LDGFESRGNVGIVAATNRPDILDPALLRPGRFDRFIEVPLPNEDGRREILKIHTSGMALAEEVDIELLARITDGASGADLKAICTEAGMFAIRDERDEVTMADFMDAVDK 391          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.415e-16
Identity = 43/110 (39.09%), Postives = 65/110 (59.09%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 363
            +D F     +  I ATNR D LD   +RPGR DR + I LPD + R +IF +H+    LAEDV+ ++L   T G SGADI+ +  E+G+M++R+    +   D +  +D+
Sbjct:  310 MDGFDPLDDIKVIAATNRKDILDPALLRPGRFDRHIKIPLPDEEGRYEIFKIHTRDMNLAEDVDLQKLAKITEGASGADIKAICTEAGMMAIREDRDIVTMDDFLKAVDR 419          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ftsH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.415e-16
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 312
            +D F   + VI I ATNRPD LD   +RPGR DR++ + LPD + R QI  VH     L+EDV+   +   T GFSGAD+ NLVNE+ + + R
Sbjct:  282 MDGFDGNEGVILIAATNRPDVLDPALLRPGRFDRQVIVALPDVRGRKQILKVHMRKVPLSEDVDPMIIARGTPGFSGADLANLVNEAALFAAR 374          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.378e-16
Identity = 41/103 (39.81%), Postives = 64/103 (62.14%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 342
            +D F  R  V  I ATNR + LD   +RPGRIDR++   LPD K + +IF +H++   LA+DV  ++L+      SGADI+ +  E+G+M++R+   K+  +D
Sbjct:  316 LDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.378e-16
Identity = 41/103 (39.81%), Postives = 64/103 (62.14%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 342
            +D F  R  V  I ATNR + LD   +RPGRIDR++   LPD K + +IF +H++   LA+DV  ++L+      SGADI+ +  E+G+M++R+   K+  +D
Sbjct:  316 LDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.378e-16
Identity = 41/103 (39.81%), Postives = 64/103 (62.14%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 342
            +D F  R  V  I ATNR + LD   +RPGRIDR++   LPD K + +IF +H++   LA+DV  ++L+      SGADI+ +  E+G+M++R+   K+  +D
Sbjct:  316 LDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.429e-15
Identity = 42/110 (38.18%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   34 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 363
            +D F+    V  I ATNR D LD   +RPGR DR + + LPD + R +IF+++    ++ +++N E L   + GFSGADI+N+  E+  M++R G +K+  +D+V+ + K
Sbjct:  265 LDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVNAITK 374          
BLAST of EY674769 vs. ExPASy Swiss-Prot
Match: FTSH7_ARATH (Cell division protease ftsH homolog 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.429e-15
Identity = 45/117 (38.46%), Postives = 67/117 (57.26%), Query Frame = 1
Query:   28 TGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL--AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQFA 372
            T +D F    AVI + ATNR D LD    RPGR DR + +  PD   R  I  VH + K+L   +DVN   +   T GF+GAD+ NLVNE+ +++ RK  + +++ D +  +++  A
Sbjct:  454 TEMDGFDSNSAVIVLGATNRADVLDPALRRPGRFDRVVTVETPDKIGRESILRVHVSKKELPLGDDVNLGSIASMTTGFTGADLANLVNEAALLAGRKNKTNVEKIDFIQAVERSIA 570          
The following BLAST results are available for this feature:
BLAST of EY674769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
PSMR_SULIA3.761e-1639.09Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PRS4_CHICK3.761e-1640.7826S protease regulatory subunit 4 OS=Gallus gallus... [more]
PSMR_METTH4.912e-1639.09Proteasome-activating nucleotidase OS=Methanobacte... [more]
PSMR_METKA6.415e-1639.09Proteasome-activating nucleotidase OS=Methanopyrus... [more]
FTSH_BUCAP6.415e-1647.31Cell division protease ftsH OS=Buchnera aphidicola... [more]
PRS4_RAT8.378e-1639.8126S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE8.378e-1639.8126S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN8.378e-1639.8126S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PSMR_SULIN1.429e-1538.18Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
FTSH7_ARATH1.429e-1538.46Cell division protease ftsH homolog 7, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-001-C01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674769 ID=EY674769; Name=EY674769; organism=Citrus sinensis; type=EST; length=951bp
CTTACCATCCCATGTACCAAGGAAAGAACTGGTATTGATCGGTTTTCACT
TAGACAAGCTGTCATATTCATCTGCGCTACCAATAGGCCAGATGAATTGG
ACCTTGAGTTTGTCCGCCCTGGACGTATTGACCGCCGTTTATACATTGGT
TTGCCTGATGCAAAGCAACGAGTGCAAATATTTGATGTGCACAGTGCAGG
AAAGCAACTTGCAGAAGATGTAAACTTTGAAGAGCTTGTCTTCCGTACAG
TTGGTTTTTCTGGGGCAGATATTAGAAATCTTGTGAATGAATCAGGAATA
ATGTCGGTGAGAAAAGGACATTCCAAAATCCAGCAACAAGACATCGTTGA
TGTGCTAGATAAACAATTTGCTTTGAGGGTATGGGTGTACCTTCTTACAG
AAGAAGAGCAACCAGAAATGTGAACAAAGTGTTTTCTTTTGAAAAAAAAA
AGGCTCTTGGGCTTGGTACATGGAAGCTGGGGCCCTTAGAATTAGCTCCA
CCTTTTTTCCTCGATTTGATTTGGCATGCATTTTCTCAAGCTCCCAACCT
GGGGGCAAGGGAAACTGGCAAAATTCTGTGGTTTTTTCCCTCGTGAAGAA
CACAAAAAATCAAGGGTTAAACAACCTTTTGGCTACTAGAAAAATGCAAA
TGGGAGGGGGGCCATGGGGGGACAAAGGGGCGGAACGACTTTGTGTGTGG
GCAAATATGTAAACTGAAGGAAAGGAAGGGAGGCCACTTAGAAAAAAAAA
TTAAAATTTGGCTAGGGAAATAGGGGGTATTTTCCCACCAAAAAGGCAGG
TGTGGGGGGGTTAGGCGGTTTTTACAAAAAAAGAATTTGAGATTTTTTGG
AGTATAACACAAAAAAGTACAGAAATGGGGTTGTTATTTGAAAAAATAAT
AAGGGGGGATATCTCTCTTCTTGACACCTACCCCCCAATTTTTTTTACAT
T
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