EY674756
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 7.642e-39 Identity = 82/141 (58.16%), Postives = 96/141 (68.09%), Query Frame = 3 Query: 96 FVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518 F+G+ N P + ++ G S R T S + WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+ + + VW K G+ + + GLDYLGNP L Sbjct: 19 FLGQTKNANPLRDVVAMG---SARFTMSNDL-----WYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGS-QIFSDGGLDYLGNPNL 150
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 6.469e-38 Identity = 80/140 (57.14%), Postives = 93/140 (66.43%), Query Frame = 3 Query: 102 GKAVNLAPSGN-ELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518 G+A + +P + + GRI+M WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+ + VW K G+ + + GLDYLGNP L Sbjct: 24 GRAASASPLRDIAAATNGRITM---------GNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGS-QIFSEGGLDYLGNPNL 153
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 1.349e-35 Identity = 72/115 (62.61%), Postives = 83/115 (72.17%), Query Frame = 3 Query: 174 ASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518 A+ + S+G WYGPDR K+LGPFS P+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PEL + VW K GA + + GLDYLG+P L Sbjct: 29 AAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGA-QIFSEGGLDYLGSPAL 142
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 6.695e-35 Identity = 83/140 (59.29%), Postives = 92/140 (65.71%), Query Frame = 3 Query: 99 VGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518 + K L P + L +M K A+KS S S RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM ALGC+FPEL + +AVW K GA + + GLDYLGNP L Sbjct: 20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFG-EAVWFKAGA-QIFSEGGLDYLGNPSL 155
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 1.948e-34 Identity = 75/122 (61.48%), Postives = 91/122 (74.59%), Query Frame = 3 Query: 165 RKTASKSV---SSGSPWYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518 +KTA+K+ SSG +YGP+R K+LGP+S P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC PEL ++ + +AVW K GA + + GLDYLGNP L Sbjct: 20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLA-KSGTKFGEAVWFKAGA-QIFSEGGLDYLGNPSL 139
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 1.263e-33 Identity = 70/94 (74.47%), Postives = 75/94 (79.79%), Query Frame = 3 Query: 237 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH WAMLGALGCVFPEL + +AVW K G+ + + GLDYLGNP L Sbjct: 1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLS-RNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPSL 92
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 2.229e-30 Identity = 64/106 (60.38%), Postives = 76/106 (71.70%), Query Frame = 3 Query: 204 WYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518 +YGPDR K+LGPFS + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PEL + VW K GA + GL+YLGN L Sbjct: 33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGA-QIFADGGLNYLGNESL 137
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 5.317e-24 Identity = 63/121 (52.07%), Postives = 74/121 (61.16%), Query Frame = 3 Query: 168 KTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVK----AVWIKGGAPNLSTRAGLDYLGNPKL 518 K SKS SS + +YGPD + P TGEFPGDYGWDTAGLSADPETF + RELE+IH R +LGALG V PEL + +K A+W K GA + GL+YLGNP L Sbjct: 45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELL---ADEDGIKFGDAAIWFKAGAA-IFQDGGLNYLGNPSL 160
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.657e-17 Identity = 59/140 (42.14%), Postives = 70/140 (50.00%), Query Frame = 3 Query: 117 LAPSGNELSNGGRISMRKTA---SKSVSSGSP----WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLG 506 LA S + S +K A SK+VS S WYGPDR +L E P YL GE GDYG+D GL PE FAK + E+IH RWAMLGA G + PE + +AVW K GA L L+Y G Sbjct: 26 LASSPSTFKTVALFSKKKPAPAKSKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNT-LNYFG 164
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 3.575e-12 Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 3 Query: 213 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 410 PDR + F G PP +L G PGD+G+D GL++DPE+ N++ E++HCRWAMLGA G PEL Sbjct: 63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEL 126 The following BLAST results are available for this feature:
BLAST of EY674756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >EY674756 ID=EY674756; Name=EY674756; organism=Citrus sinensis; type=EST; length=1005bpback to top |