EY720473

Overview
NameEY720473
Unique NameEY720473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720473 vs. ExPASy Swiss-Prot
Match: GPDA_STAA8 (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Staphylococcus aureus (strain NCTC 8325) GN=gpsA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.998e-47
Identity = 100/234 (42.74%), Postives = 150/234 (64.10%), Query Frame = -3
Query:    1 KXLVSLTKGIEAHTFKLMSEILEE-IAPR--ARIGVLSGPNLAREVAEHALTATVIASEDEELCERVQAVLHGRTFRVYASADRFGVELGGALKNVYAIIAGMAVALGMGENTKSMLITRALAEMTRFAVNQGANPMTFLGLAGVGDLIVTCSSPKSRNYQVGFALGQGLSLEDAVTRLGEVAEGVNTLKVLKAKAQEVGVYMPLVAGLHAILFEGRTLNQVIELLMRAEPKTD 693
            K  + + KGIE  TFK +SE++E+ I+P   A IGVLSGP+ A EV     T    +S+D+ + +  Q +      RVY + D  GVELGGALKN+ A+ +G+   +G G+N K+ L+TR LAE++R     GA+PMTFLGL G+GDLIVTC+S  SRN+ +G+ LGQG S++ A++ +  V EG+ T K +   A+E  V MP+   L+ +LFE  ++ + ++ LM  + K++
Sbjct:   99 KTFIHVAKGIENGTFKRVSEMIEDSISPEYNAGIGVLSGPSHAEEVVVKQPTTVAASSKDKSVSKLTQDLFMNDYLRVYTNDDLIGVELGGALKNIIAVASGIVAGIGYGDNAKAALMTRGLAEISRLGEKLGADPMTFLGLGGIGDLIVTCTSTHSRNFTLGYKLGQGESMDQALSEMNMVVEGIYTTKSVYHLAKEKNVDMPITNALYRVLFENISVKECVKDLMERDKKSE 332          
BLAST of EY720473 vs. ExPASy Swiss-Prot
Match: GPDA_STAA3 (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Staphylococcus aureus (strain USA300) GN=gpsA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.998e-47
Identity = 100/234 (42.74%), Postives = 150/234 (64.10%), Query Frame = -3
Query:    1 KXLVSLTKGIEAHTFKLMSEILEE-IAPR--ARIGVLSGPNLAREVAEHALTATVIASEDEELCERVQAVLHGRTFRVYASADRFGVELGGALKNVYAIIAGMAVALGMGENTKSMLITRALAEMTRFAVNQGANPMTFLGLAGVGDLIVTCSSPKSRNYQVGFALGQGLSLEDAVTRLGEVAEGVNTLKVLKAKAQEVGVYMPLVAGLHAILFEGRTLNQVIELLMRAEPKTD 693
            K  + + KGIE  TFK +SE++E+ I+P   A IGVLSGP+ A EV     T    +S+D+ + +  Q +      RVY + D  GVELGGALKN+ A+ +G+   +G G+N K+ L+TR LAE++R     GA+PMTFLGL G+GDLIVTC+S  SRN+ +G+ LGQG S++ A++ +  V EG+ T K +   A+E  V MP+   L+ +LFE  ++ + ++ LM  + K++
Sbjct:   99 KTFIHVAKGIENGTFKRVSEMIEDSISPEYNAGIGVLSGPSHAEEVVVKQPTTVAASSKDKSVSKLTQDLFMNDYLRVYTNDDLIGVELGGALKNIIAVASGIVAGIGYGDNAKAALMTRGLAEISRLGEKLGADPMTFLGLGGIGDLIVTCTSTHSRNFTLGYKLGQGESMDQALSEMNMVVEGIYTTKSVYHLAKEKNVDMPITNALYRVLFENISVKECVKDLMERDKKSE 332          
BLAST of EY720473 vs. ExPASy Swiss-Prot
Match: GPDA_EXISA (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=gpsA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.998e-47
Identity = 104/230 (45.22%), Postives = 142/230 (61.74%), Query Frame = -3
Query:    7 LVSLTKGIEAHTFKLMSEIL-EEIAPRAR--IGVLSGPNLAREVAEHALTATVIASEDEELCERVQAVLHGRTFRVYASADRFGVELGGALKNVYAIIAGMAVALGMGENTKSMLITRALAEMTRFAVNQGANPMTFLGLAGVGDLIVTCSSPKSRNYQVGFALGQGLSLEDAVTRLGEVAEGVNTLKVLKAKAQEVGVYMPLVAGLHAILFEGRTLNQVIELLMRAEPK 687
            +V   KGIE  T + +SEI+ EEI P  R  IGVL+GP  A EVA    T   IA  D ++ + VQ +L    FRVY ++D  G E GGALKN+ A+ AGM   LG G+N K+ L+TR + E+ R  V  GANP +F GL G+GDLIVT +S  SRN++ G A+G+G  LED +  +G V EGV   +   + A+E GV MP+   L+ +LFEG++ +  ++ LMR   K
Sbjct:  101 IVHAAKGIEPKTHERLSEIIAEEIEPAKRRAIGVLTGPTHAEEVAVRKPTTITIACADLDVADEVQELLTNDQFRVYLNSDVVGAEYGGALKNIIALAAGMTDGLGYGDNAKAALMTRGIVEIARLGVKLGANPASFSGLTGIGDLIVTATSQHSRNWRAGNAIGRGEKLEDVLGNMGMVVEGVRACEAAHSLAKEAGVEMPITEALYNVLFEGKSPHDEVKKLMRRPQK 330          
BLAST of EY720473 vs. ExPASy Swiss-Prot
Match: GPDA_GEOBB (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=gpsA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 6.611e-47
Identity = 104/227 (45.81%), Postives = 144/227 (63.44%), Query Frame = -3
Query:   19 LVSLTKGIEAHTFKLMSEILEEIAPRARIGVL---SGPNLAREVAEHALTATVIASEDEELCERVQAVLHGRTFRVYASADRFGVELGGALKNVYAIIAGMAVALGMGENTKSMLITRALAEMTRFAVNQGANPMTFLGLAGVGDLIVTCSSPKSRNYQVGFALGQGLSLEDAVTRLGEVAEGVNTLKVLKAKAQEVGVYMPLVAGLHAILFEGRTLNQ-VIELLMR 687
            +VS +KGIE  T   +SEI +EI P  +  VL   SGP+ AREVA    TA   A+  E +  RVQ       FRVY ++D  GVELGGA+KNV AI AG++  LG G NT++ LITR LAEMTR  V  GA P TF GLAG+GDL++TC+   SRN  VG  +GQG +L + +  +  VAEGV T +     A+++GV MP++  ++ +L++ ++  + V+EL+ R
Sbjct:  102 IVSASKGIEVDTLATVSEIYQEILPPEQFQVLAALSGPSFAREVALEMPTAVTAAASSEAVARRVQEAFTTDYFRVYRNSDVVGVELGGAIKNVIAIAAGISDGLGFGSNTRAALITRGLAEMTRLGVAMGAQPSTFAGLAGMGDLVLTCTGDLSRNRSVGIQIGQGRTLSEILGEMRMVAEGVKTTESAYNLAKKLGVEMPIIEQMYQMLYQNKSAREAVLELMTR 328          

HSP 2 Score: 22.7126 bits (47), Expect = 6.611e-47
Identity = 15/50 (30.00%), Postives = 20/50 (40.00%), Query Frame = -2
Query:  710 NRETPRFPKGIKNLPPVEPSTDLLATLTECDLCFVGWPSSALRSVLAPHL 859
            NRE   F  GIK    +  + DL      C +     PS  +R V+   L
Sbjct:   44 NRENSLFLPGIKLNERLAFTNDLAEAYRGCSMVLCVVPSQLVRRVMTNSL 93          
BLAST of EY720473 vs. ExPASy Swiss-Prot
Match: GPDA_STAAR (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Staphylococcus aureus (strain MRSA252) GN=gpsA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.834e-47
Identity = 100/234 (42.74%), Postives = 150/234 (64.10%), Query Frame = -3
Query:    1 KXLVSLTKGIEAHTFKLMSEILEE-IAPR--ARIGVLSGPNLAREVAEHALTATVIASEDEELCERVQAVLHGRTFRVYASADRFGVELGGALKNVYAIIAGMAVALGMGENTKSMLITRALAEMTRFAVNQGANPMTFLGLAGVGDLIVTCSSPKSRNYQVGFALGQGLSLEDAVTRLGEVAEGVNTLKVLKAKAQEVGVYMPLVAGLHAILFEGRTLNQVIELLMRAEPKTD 693
            K  + + KGIE  TFK +SE++E+ I+P   A IGVLSGP+ A EV     T    +S+D+ + +  Q +      RVY + D  GVELGGALKN+ A+ +G+   +G G+N K+ L+TR LAE++R     GA+PMTFLGL G+GDLIVTC+S  SRN+ +G+ LGQG S++ A++ +  V EG+ T K +   A+E  V MP+   L+ +LFE  ++ + ++ LM  + K++
Sbjct:   99 KTFIHVAKGIENGTFKRVSEMIEDSISPEYNAGIGVLSGPSHAEEVVVKQPTTVAASSKDKNVSKLTQDLFMNDYLRVYTNDDLVGVELGGALKNIIAVASGIVAGIGYGDNAKAALMTRGLAEISRLGEKLGADPMTFLGLGGIGDLIVTCTSTHSRNFTLGYKLGQGESMDQALSEMNMVVEGIYTTKSVYHLAKEKNVDMPITNALYRVLFENISVKECVKDLMERDKKSE 332          
BLAST of EY720473 vs. ExPASy Swiss-Prot
Match: GPDA_PELTS (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=gpsA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.834e-47
Identity = 104/225 (46.22%), Postives = 145/225 (64.44%), Query Frame = -3
Query:   22 LVSLTKGIEAHTFKLMSEILEEIAPRA---RIGVLSGPNLAREVAEHALTATVIASEDEELCERVQAVLHGRTFRVYASADRFGVELGGALKNVYAIIAGMAVALGMGENTKSMLITRALAEMTRFAVNQGANPMTFLGLAGVGDLIVTCSSPKSRNYQVGFALGQGLSLEDAVTRLGEVAEGVNTLKVLKAKAQEVGVYMPLVAGLHAILFEGRTLNQVIELLM 687
            LV++ KGIE  +   MS++  E A  +   R  VLSGP+ A EV     TA V+AS + E  E+VQ +    +FRVY + D  GVELGGALKN+ A+  G+A  LG G+NTK+ L+TR LAE++R  +  GANP+TF GL+GVGDLIVTC+S  SRN + G A+GQG SLE+A++ +  V EGV T +  +  +++  V MP+   +H +LFEG +    +  LM
Sbjct:  102 LVNVAKGIEEESLYRMSQVFAEEAGLSMLDRYVVLSGPSHAEEVGRDIPTAVVVASPNMERAEQVQDLFMCESFRVYTNPDVVGVELGGALKNIIALGTGIADGLGFGDNTKAALMTRGLAEISRLGMVMGANPLTFAGLSGVGDLIVTCTSMHSRNRRAGMAIGQGKSLEEALSMVKMVVEGVRTTRAARRLSEKHAVQMPITEQIHRVLFEGLSPAVAVNKLM 326          
BLAST of EY720473 vs. ExPASy Swiss-Prot
Match: GPDA_LACH4 (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Lactobacillus helveticus (strain DPC 4571) GN=gpsA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.023e-46
Identity = 104/233 (44.64%), Postives = 150/233 (64.38%), Query Frame = -3
Query:    1 LVSLTKGIEAHTFKLMSEIL-EEIAPRA--RIGVLSGPNLAREVAEHALTATVIASEDEELCERVQAVLHGRTFRVYASADRFGVELGGALKNVYAIIAGMAVALGMGENTKSMLITRALAEMTRFAVNQ-GANPMTFLGLAGVGDLIVTCSSPKSRNYQVGFALGQGLSLEDAVTRLGEVAEGVNTLKVLKAKAQEVGVYMPLVAGLHAILFEGRTLNQVIELLMRAEPKTD 687
            LV+ TKGIE  T KL+SEIL EE+ P    +I  +SGP+ A  VA+  LTA   AS DEE  ++VQ +      R Y + D  GVE+GGA+KNV AI AG+ V  G G++ K+ L+TR LAE+TR  VN  GA PMTF GL+G+GDLIVTC+S  SRN++ G  +G+G SL+  +  +G+V EG  T+K +   ++E  + MP+   ++ +L+E   + + I+ +M  +PK +
Sbjct:  104 LVTATKGIEPGTKKLISEILTEEVYPNDEDKIVAISGPSHAENVAQKDLTAIACASTDEENAKKVQKIFSNDYVRFYTNDDLVGVEVGGAVKNVIAIAAGILVGQGYGDDAKAALMTRGLAEITRLGVNYFGAKPMTFSGLSGIGDLIVTCTSVNSRNWRAGKQIGEGKSLDYVLKNMGQVVEGATTVKAVHELSEEKNIDMPICDAIYRVLYENTDVAEEIKQMMGRDPKPE 336          
BLAST of EY720473 vs. ExPASy Swiss-Prot
Match: GPDA_STRCO (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptomyces coelicolor GN=gpsA PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.336e-46
Identity = 103/234 (44.02%), Postives = 145/234 (61.97%), Query Frame = -3
Query:    1 GKXLVSLTKGIEAHTFKLMSEILEEIAP--RARIGVLSGPNLAREVAEHALTATVIASEDEELCERVQAVLHGRTFRVYASADRFGVELGGALKNVYAIIAGMAVALGMGENTKSMLITRALAEMTRFAVNQGANPMTFLGLAGVGDLIVTCSSPKSRNYQVGFALGQGLSLEDAVTRLGEVAEGVNTLKVLKAKAQEVGVYMPLVAGLHAILFEGRTLNQVIELLMRAEPKTD 696
            G  LVSL KG+E  +   MSE++ ++A     RI V++GPNLARE+A     A V+A  DE + +R+QA  H   FR Y + D  G ELGGA+KNV  +  G+A  +G+G+N K  LITR LAE TR  V  GA+P+TF GLAG+GDL+ TCSSP SRN+  G  LG+G++LE+      + AEGV + + +   A+  GV MP+   + AI+ EG++    ++ LM    K +
Sbjct:  101 GTVLVSLMKGVELGSAMRMSEVIGDVAKVGAERIAVVTGPNLAREIAARMPAAAVVACPDETVAQRLQAACHTPYFRPYTNTDVVGCELGGAVKNVIGLAVGIADGMGLGDNAKGSLITRGLAETTRLGVALGADPLTFSGLAGLGDLVATCSSPLSRNHTFGTNLGKGMTLEETNAVTKQTAEGVKSCESVLDLARRHGVDMPITETVVAIVHEGKSPVVAVKELMSRSAKPE 334          
BLAST of EY720473 vs. ExPASy Swiss-Prot
Match: GPDA_STAAN (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Staphylococcus aureus (strain N315) GN=gpsA PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.336e-46
Identity = 100/234 (42.74%), Postives = 149/234 (63.68%), Query Frame = -3
Query:    1 KXLVSLTKGIEAHTFKLMSEILEE-IAPR--ARIGVLSGPNLAREVAEHALTATVIASEDEELCERVQAVLHGRTFRVYASADRFGVELGGALKNVYAIIAGMAVALGMGENTKSMLITRALAEMTRFAVNQGANPMTFLGLAGVGDLIVTCSSPKSRNYQVGFALGQGLSLEDAVTRLGEVAEGVNTLKVLKAKAQEVGVYMPLVAGLHAILFEGRTLNQVIELLMRAEPKTD 693
            K  + + KGIE  TFK +SE++E+ I+P   A IGVLSGP+ A EV     T    +S+D+ + +  Q +      RVY + D  GVELGGALKN+ A+ +G+   +G G+N K+ L+TR LAE++R     GA+PMTFLGL G+GDLIVTC S  SRN+ +G+ LGQG S++ A++ +  V EG+ T K +   A+E  V MP+   L+ +LFE  ++ + ++ LM  + K++
Sbjct:   99 KTFIHVAKGIENGTFKRVSEMIEDSISPEYNAGIGVLSGPSHAEEVVVKQPTTVAASSKDKSVSKLTQDLFMNDYLRVYTNDDLIGVELGGALKNIIAVASGIVAGIGYGDNAKAALMTRGLAEISRLGEKLGADPMTFLGLGGIGDLIVTCISTHSRNFTLGYKLGQGESMDQALSEMNMVVEGIYTTKSVYHLAKEKNVDMPITNALYRVLFENISVKECVKDLMERDKKSE 332          
BLAST of EY720473 vs. ExPASy Swiss-Prot
Match: GPDA_STAAM (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gpsA PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.336e-46
Identity = 100/234 (42.74%), Postives = 149/234 (63.68%), Query Frame = -3
Query:    1 KXLVSLTKGIEAHTFKLMSEILEE-IAPR--ARIGVLSGPNLAREVAEHALTATVIASEDEELCERVQAVLHGRTFRVYASADRFGVELGGALKNVYAIIAGMAVALGMGENTKSMLITRALAEMTRFAVNQGANPMTFLGLAGVGDLIVTCSSPKSRNYQVGFALGQGLSLEDAVTRLGEVAEGVNTLKVLKAKAQEVGVYMPLVAGLHAILFEGRTLNQVIELLMRAEPKTD 693
            K  + + KGIE  TFK +SE++E+ I+P   A IGVLSGP+ A EV     T    +S+D+ + +  Q +      RVY + D  GVELGGALKN+ A+ +G+   +G G+N K+ L+TR LAE++R     GA+PMTFLGL G+GDLIVTC S  SRN+ +G+ LGQG S++ A++ +  V EG+ T K +   A+E  V MP+   L+ +LFE  ++ + ++ LM  + K++
Sbjct:   99 KTFIHVAKGIENGTFKRVSEMIEDSISPEYNAGIGVLSGPSHAEEVVVKQPTTVAASSKDKSVSKLTQDLFMNDYLRVYTNDDLIGVELGGALKNIIAVASGIVAGIGYGDNAKAALMTRGLAEISRLGEKLGADPMTFLGLGGIGDLIVTCISTHSRNFTLGYKLGQGESMDQALSEMNMVVEGIYTTKSVYHLAKEKNVDMPITNALYRVLFENISVKECVKDLMERDKKSE 332          
The following BLAST results are available for this feature:
BLAST of EY720473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GPDA_STAA85.998e-4742.74Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=St... [more]
GPDA_STAA35.998e-4742.74Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=St... [more]
GPDA_EXISA5.998e-4745.22Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Ex... [more]
GPDA_GEOBB6.611e-4745.81Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Ge... [more]
GPDA_STAAR7.834e-4742.74Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=St... [more]
GPDA_PELTS7.834e-4746.22Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Pe... [more]
GPDA_LACH41.023e-4644.64Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=La... [more]
GPDA_STRCO1.336e-4644.02Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=St... [more]
GPDA_STAAN1.336e-4642.74Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=St... [more]
GPDA_STAAM1.336e-4642.74Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=St... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-009-H11-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720473 ID=EY720473; Name=EY720473; organism=Citrus sinensis; type=EST; length=860bp
ATCGGTCTTCGGCTCGGCCCGCATCAGCAACTCGATGACCTGGTTCAAGG
TGCGCCCTTCAAACAGGATCGCGTGCAAACCCGCGACCAGCGGCATATAC
ACCCCGACTTCCTGAGCCTTGGCCTTCAGCACCTTCAGGGTGTTGACGCC
TTCGGCCACTTCGCCCAAACGCGTCACGGCGTCTTCCAGGCTCAGGCCCT
GGCCGAGGGCAAAACCGACCTGATAGTTGCGGCTTTTCGGTGACGAGCAG
GTGACGATCAGGTCGCCCACACCCGCCAGGCCAAGGAAGGTCATCGGGTT
GGCGCCCTGGTTGACCGCAAAGCGCGTCATCTCGGCCAAGGCACGGGTGA
TCAGCATGCTCTTGGTGTTTTCGCCCATGCCCAGCGCAACCGCCATGCCG
GCGATGATCGCGTAGACGTTTTTTAACGCCCCGCCCAGTTCGACGCCGAA
GCGGTCAGCACTGGCGTAAACGCGGAAGGTGCGACCGTGCAGCACTGCCT
GCACCCGCTCGCAGAGTTCTTCGTCTTCACTCGCGATCACGGTGGCGGTC
AGGGCGTGCTCAGCCACTTCCCGCGCCAGGTTCGGTCCGGACAACACGCC
AATGCGCGCTCGGGGGGCGATTTCTTCAAGGATTTCGCTCATCAACTTGA
AGGTGTGCGCCTCGATGCCCTTGGTCAGGCTGACCAGCANCTTGCCCGCC
AACCCGTCGGAGGTGAGGCGCGAGCACCGAACGCAAGGCACTGGATGGCC
AACCGACGAAACACAAGTCGCACTCGGTCAACGTCGCCAGCAAATCTGTC
GACGGCTCAACAGGGGGCAGATTCTTGATTCCTTTAGGGAACCGGGGGGT
TTCCCGGTTT
back to top