EY680418

Overview
NameEY680418
Unique NameEY680418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680418 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.409e-31
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 3
Query:    3 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 197
            +DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  201 EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of EY680418 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.409e-31
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 3
Query:    3 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 197
            DDPEAFA++KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  201 DDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of EY680418 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.409e-31
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 3
Query:    3 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 197
            DDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAW+YATNFVPGK
Sbjct:  204 DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268          
BLAST of EY680418 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.409e-31
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 3
Query:    3 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 197
            DDPEAFAEL+VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  202 DDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of EY680418 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.758e-31
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 3
Query:    3 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 197
            +DPEAFAELKVKEIKNGRLAMFSMFGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  202 EDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266          
BLAST of EY680418 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.758e-31
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 3
Query:    3 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 197
            DDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA PVNNNAWAYATNFVPGK
Sbjct:  199 DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263          
BLAST of EY680418 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.758e-31
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 3
Query:    3 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 194
            DDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  198 DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of EY680418 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.521e-31
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 3
Query:    3 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 197
            +DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  203 EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of EY680418 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.521e-31
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 3
Query:    3 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 197
            +DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  203 EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of EY680418 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.521e-31
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 3
Query:    3 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 197
            DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  203 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          
The following BLAST results are available for this feature:
BLAST of EY680418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB2A_SOLLC4.409e-3196.92Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB29_MAIZE4.409e-3195.38Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB28_PEA4.409e-3195.38Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_PETSP4.409e-3196.92Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB25_NICPL5.758e-3195.38Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB23_SOYBN5.758e-3196.92Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE5.758e-3196.88Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2F_SOLLC7.521e-3195.38Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC7.521e-3195.38Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2A_SPIOL7.521e-3196.92Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-010-H04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680418 ID=EY680418; Name=EY680418; organism=Citrus sinensis; type=EST; length=488bp
CTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAAT
GGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGT
CACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCCGACCCTG
TCAACAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGA
GCTTCGGTTGATAACATTAGTAGCGTGGAAATTGGAATTGAGAGTGATTG
GTTATTGATGTGACTCTATTTCAACTTGCAAAACATGTGAATTATGTAAT
GTACTGCTACTACCAGTTTGAGGGGATTGTATTTTCATTCAATCTCTTGT
CGCACGGTTCTAGTTCTAGTTCCTCCTCCTTACAGGTTGTGCCAGAATCT
AGTTACAAGTTTACATCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
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