EY650472

Overview
NameEY650472
Unique NameEY650472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length931
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650472 vs. ExPASy Swiss-Prot
Match: ESRP2_MOUSE (Epithelial splicing regulatory protein 2 OS=Mus musculus GN=Esrp2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.854e-12
Identity = 46/139 (33.09%), Postives = 73/139 (52.52%), Query Frame = 3
Query:  345 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPXPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQF 752
            VVR RGLP+  +D D+ +FF GL+I      L +N  GR +GEA + F    Q + ALQR + +MG RY+EV++   +++                   G      A+  + +DQ+    IL++RGLPFS   ++++ F
Sbjct:  248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIA---------------GGTSLEVARFLSREDQV----ILRLRGLPFSAGPTDVLGF 367          
BLAST of EY650472 vs. ExPASy Swiss-Prot
Match: HNRH1_RAT (Heterogeneous nuclear ribonucleoprotein H OS=Rattus norvegicus GN=Hnrnph1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.422e-12
Identity = 69/250 (27.60%), Postives = 101/250 (40.40%), Query Frame = 3
Query:  348 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFH--GSPXPSRAKRYNDKDQMEHT-------------EILKMRGLPFSVKKSEIVQFFKDYPDIEDXIHIACRPDXXXXXXXXXXXXSVKGAXRACVKTRDNC-FXYVXLF 911
            VRLRGLPF C++ +I +FF+GL+IV     L V+  GR +GEAFV FA     E AL++ ++ +G RY+E+F+  R +                            YN++     +E           G YD     ND +  GS    R   Y      +H                + MRGLP+   +++I  FF     +   +HI   PD            + + A  A  K + N    YV LF
Sbjct:  113 VRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVR--VHIETGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 360          

HSP 2 Score: 71.633 bits (174), Expect = 7.046e-12
Identity = 47/142 (33.10%), Postives = 75/142 (52.82%), Query Frame = 3
Query:  345 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPXPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFF 755
            VV++RGLP++C+  ++ +FF+   I +       +  + GR SGEAFV      +V+ AL++DR+ MG RYVEVF+          ++ V  + +  +    SP  +     ND         +++RGLPF   + EIVQFF
Sbjct:   12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSEEEIVQFF 131          
BLAST of EY650472 vs. ExPASy Swiss-Prot
Match: HNRH1_MOUSE (Heterogeneous nuclear ribonucleoprotein H OS=Mus musculus GN=Hnrnph1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.422e-12
Identity = 48/142 (33.80%), Postives = 75/142 (52.82%), Query Frame = 3
Query:  345 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPXPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFF 755
            VV++RGLP++C+  ++ +FF+   I +       +  + GR SGEAFV      +V+ AL++DR+ MG RYVEVF+          ++ V  + +  +    SP  +     ND         +++RGLPF   K EIVQFF
Sbjct:   12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSKEEIVQFF 131          

HSP 2 Score: 72.0182 bits (175), Expect = 5.395e-12
Identity = 69/250 (27.60%), Postives = 100/250 (40.00%), Query Frame = 3
Query:  348 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFH--GSPXPSRAKRYNDKDQMEHT-------------EILKMRGLPFSVKKSEIVQFFKDYPDIEDXIHIACRPDXXXXXXXXXXXXSVKGAXRACVKTRDNC-FXYVXLF 911
            VRLRGLPF C+  +I +FF+GL+IV     L V+  GR +GEAFV FA     E AL++ ++ +G RY+E+F+  R +                            YN++     +E           G YD     ND +  GS    R   Y      +H                + MRGLP+   +++I  FF     +   +HI   PD            + + A  A  K + N    YV LF
Sbjct:  113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 360          
BLAST of EY650472 vs. ExPASy Swiss-Prot
Match: HNRH1_HUMAN (Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens GN=HNRNPH1 PE=1 SV=4)

HSP 1 Score: 73.1738 bits (178), Expect = 2.422e-12
Identity = 48/142 (33.80%), Postives = 75/142 (52.82%), Query Frame = 3
Query:  345 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPXPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFF 755
            VV++RGLP++C+  ++ +FF+   I +       +  + GR SGEAFV      +V+ AL++DR+ MG RYVEVF+          ++ V  + +  +    SP  +     ND         +++RGLPF   K EIVQFF
Sbjct:   12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSKEEIVQFF 131          

HSP 2 Score: 72.0182 bits (175), Expect = 5.395e-12
Identity = 69/250 (27.60%), Postives = 100/250 (40.00%), Query Frame = 3
Query:  348 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFH--GSPXPSRAKRYNDKDQMEHT-------------EILKMRGLPFSVKKSEIVQFFKDYPDIEDXIHIACRPDXXXXXXXXXXXXSVKGAXRACVKTRDNC-FXYVXLF 911
            VRLRGLPF C+  +I +FF+GL+IV     L V+  GR +GEAFV FA     E AL++ ++ +G RY+E+F+  R +                            YN++     +E           G YD     ND +  GS    R   Y      +H                + MRGLP+   +++I  FF     +   +HI   PD            + + A  A  K + N    YV LF
Sbjct:  113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 360          
BLAST of EY650472 vs. ExPASy Swiss-Prot
Match: ESRP2_HUMAN (Epithelial splicing regulatory protein 2 OS=Homo sapiens GN=ESRP2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.422e-12
Identity = 45/139 (32.37%), Postives = 73/139 (52.52%), Query Frame = 3
Query:  345 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPXPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQF 752
            VVR RGLP+  +D D+ +FF GL++      L +N  GR +GEA + F    Q + ALQR + +MG RY+EV++   +++                   G      A+  + +DQ+    IL++RGLPFS   ++++ F
Sbjct:  258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIA---------------GGTSLEVARFLSREDQV----ILRLRGLPFSAGPTDVLGF 377          
BLAST of EY650472 vs. ExPASy Swiss-Prot
Match: SYM2_CAEEL (RNA-binding protein sym-2 OS=Caenorhabditis elegans GN=sym-2 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 45/142 (31.69%), Postives = 74/142 (52.11%), Query Frame = 3
Query:  345 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL--VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPXPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDY 764
            +VR+RGLP++CTD  I  FF  L + D +L     +GR +G+AFV F      +  L + RQ +G+RY+E+F+        + A+EV       N  + SP  + A    +  + +  + +++RGLP+      IV F  D+
Sbjct:  282 IVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLKHRQVIGQRYIELFK--------STAAEVQQVVKRCNLINSSPAVANAV---EAPEEKKKDCVRLRGLPYEATVQHIVTFLGDF 412          
BLAST of EY650472 vs. ExPASy Swiss-Prot
Match: ESRP2_DANRE (Epithelial splicing regulatory protein 2 OS=Danio rerio GN=esrp2 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = 3
Query:  345 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPXPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQF 752
            V+R RGLP+  +D DI +FF GL+I      L +N  GR +GEA V F      + AL R + +MG RY+EV++   +++        N                 A+  + ++QM    I++MRGLPF+    +++ F
Sbjct:  225 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDMALDRHKHHMGSRYIEVYKATGEEFLKIAGGTSN---------------EVAQFLSKENQM----IIRMRGLPFTATPQDVLGF 344          
BLAST of EY650472 vs. ExPASy Swiss-Prot
Match: FUSIL_DROME (RNA-binding protein fusilli OS=Drosophila melanogaster GN=fus PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 57/203 (28.08%), Postives = 94/203 (46.31%), Query Frame = 3
Query:  345 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPXPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFK--DYP-----DIEDXIHIACRPDXXXXXXXXXXXXSVKGAXRACVKTRDNC-FXYVXLFPST 920
            +VR RGLP+  +D DI KFF GL++      L ++  GR +GEA + F      + AL+R + ++G RY+EV+R   +D+  A+A   + E               A+ +  K       I++MRGLP+     +++ FF   D P     D  + +    +PD            +   A +A  + R++    Y+ LF ST
Sbjct:  280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKRHKHHIGTRYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGAQ---VIIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDAPKALGRHRESIGQRYIELFRST 463          
BLAST of EY650472 vs. ExPASy Swiss-Prot
Match: HNRH3_HUMAN (Heterogeneous nuclear ribonucleoprotein H3 OS=Homo sapiens GN=HNRNPH3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.497e-11
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  348 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 572
            VRLRGLPF C+  +I +FF GL+IV     L ++  GR +GEAFV FA     E AL + ++ +G RY+E+FR  R +
Sbjct:   18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSE 95          
The following BLAST results are available for this feature:
BLAST of EY650472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
ESRP2_MOUSE1.854e-1233.09Epithelial splicing regulatory protein 2 OS=Mus mu... [more]
HNRH1_RAT2.422e-1227.60Heterogeneous nuclear ribonucleoprotein H OS=Rattu... [more]
HNRH1_MOUSE2.422e-1233.80Heterogeneous nuclear ribonucleoprotein H OS=Mus m... [more]
HNRH1_HUMAN2.422e-1233.80Heterogeneous nuclear ribonucleoprotein H OS=Homo ... [more]
ESRP2_HUMAN2.422e-1232.37Epithelial splicing regulatory protein 2 OS=Homo s... [more]
SYM2_CAEEL1.202e-1131.69RNA-binding protein sym-2 OS=Caenorhabditis elegan... [more]
ESRP2_DANRE1.202e-1131.65Epithelial splicing regulatory protein 2 OS=Danio ... [more]
FUSIL_DROME2.050e-1128.08RNA-binding protein fusilli OS=Drosophila melanoga... [more]
HNRH3_HUMAN3.497e-1146.15Heterogeneous nuclear ribonucleoprotein H3 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-011-D07-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650472 ID=EY650472; Name=EY650472; organism=Citrus sinensis; type=EST; length=931bp
CCCACGCGTCCGCCCACGCGTCCGGTTTGAGCTTTGAGTTTAGGGTTCTT
TTTGTTTTTTGGTCTCTGTACGATCGAGTTTCCTATTAGGGTTTGTTCTA
ATTTCATCATCATCAGCAAGATAATCGAAGAAGCTGAGAAAGAATTGAAT
TTTCAACAGTAAAAGCTATGTACGGATCCAGAGGGGCAATATTGGGAAGC
GGGGGGGTTTCGGACGGGTACGAGGTCGGCTCAAAGAGACAAAGAATGAT
GGAACCAAATCCTTACTTCGCAGTGAGCAGCAGTGCAAGTGGCTTTCAAC
CTTACGGCTATGGTGGTGGGTTTCCACCCCCGCCTTCCTTTCCTGTTGTT
CGCCTCAGGGGGCTGCCATTTAACTGCACTGATATTGACATTTGCAAGTT
CTTTGCTGGACTGGATATTGTGGATGTGTTGCTGGTCAACAAGAATGGAC
GCTTCTCAGGAGAGGCTTTTGTTGTCTTTGCTGGGCCCATACAAGTTGAG
TTTGCTTTACAGAGAGATCGGCAGAACATGGGGCGTCGGTATGTTGAAGT
TTTCAGGTGCAAGAGACAGGATTACTACAATGCCGTGGCTTCAGAGGTGA
ATTATGAAGGGATCTATGATAATGATTTCCATGGAAGTCCTNCACCATCA
CGAGCTAAGAGGTACAATGATAAAGATCAAATGGAACACACTGAAATTTT
GAAGATGCGTGGTCTTCCTTTCTCTGTGAAGAAATCTGAAATAGTTCAAT
TCTTTAAAGACTACCCAGATATTGAGGATNAGATACACATTGCATGCCGA
CCTGATGGTANGGCTACCGGNTGAGCATATGTGGGAGTTGTTTCTGTAAA
AGGAGCTAANAGAGCATGTGTAAAGACCAGAGACAATTGTTTCNAGTATG
TCNAGCTGTTCCCTTCCACCTGATGAGCTCG
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