EY650337

Overview
NameEY650337
Unique NameEY650337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650337 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.895e-17
Identity = 58/162 (35.80%), Postives = 84/162 (51.85%), Query Frame = 2
Query:  197 AGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGXRWADIIKPGCVNTDPIFPNNS 616
            A T+ ++ SA+ +    P+R L+   F G  PP +L G  PGD+G+D  GL +DPE    N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A    P    TDPI+P  S
Sbjct:   44 ATTKKLTASASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPIYPGGS 202          
BLAST of EY650337 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.380e-16
Identity = 50/131 (38.17%), Postives = 69/131 (52.67%), Query Frame = 2
Query:  272 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGXRWADIIKPGCVNTDPIFPNNS 616
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+     SW+ AG        L+Y  + +         ++  ++I +G  EG R A    P    TDPI+P  S
Sbjct:   45 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVTDPIYPGGS 173          
BLAST of EY650337 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.766e-16
Identity = 56/157 (35.67%), Postives = 80/157 (50.96%), Query Frame = 2
Query:  203 TRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGXRWADIIKPGCVNTDPIFPNNS 616
            T+ VS  +    P+R  +   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A    P    TDPI+P  S
Sbjct:   38 TKQVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVTDPIYPGGS 191          
BLAST of EY650337 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.766e-16
Identity = 55/144 (38.19%), Postives = 75/144 (52.08%), Query Frame = 2
Query:  242 NRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGXRWADIIKPGCVNTDPIFPNNS 616
            +RPL+   F GS PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL K G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A    P     DPI+P  S
Sbjct:   53 DRPLYLGPFSGS-PPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG--GPLGEVEDPIYPGGS 193          
BLAST of EY650337 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.766e-16
Identity = 53/158 (33.54%), Postives = 78/158 (49.37%), Query Frame = 2
Query:  197 AGTRSVSVSAAAADPNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGXRWADIIKPGCVNTDPIFPNNS 616
            A  + VS S+     +R L+       PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P  S
Sbjct:   39 AKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAG--GPLGEIVDPLYPGGS 194          
BLAST of EY650337 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.835e-16
Identity = 50/144 (34.72%), Postives = 73/144 (50.69%), Query Frame = 2
Query:  239 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGXRWADIIKPGCVNTDPIFPNNS 616
            P+R L+       PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P  S
Sbjct:   52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVVDPLYPGGS 193          
BLAST of EY650337 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.835e-16
Identity = 55/157 (35.03%), Postives = 81/157 (51.59%), Query Frame = 2
Query:  203 TRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGXRWADIIKPGCVNTDPIFPNNS 616
            ++SVS  +    P+R  +   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P    TDPI+P  S
Sbjct:   30 SKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPIYPGGS 183          
BLAST of EY650337 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.284e-15
Identity = 45/109 (41.28%), Postives = 57/109 (52.29%), Query Frame = 2
Query:  254 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA--GELEY------FTDTTTLFIVEMIFIGWAEGXR 556
            WFPG   P  LDGS PGDFGFDPLGL + PE      +SEI HCRWAML   G+ +PE L     +    W     G+  Y      + +  T+  +E + I +AE  R
Sbjct:   48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR 156          
BLAST of EY650337 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.678e-15
Identity = 53/156 (33.97%), Postives = 79/156 (50.64%), Query Frame = 2
Query:  206 RSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGXRWADIIKPGCVNTDPIFPNNS 616
            + VS S+    PNR  +   F G +P  +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+  G        L+Y  + +         ++  +++ +G  EG R A   +P     DP++P  S
Sbjct:   43 KPVSSSSPWYGPNRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--EPLGEVVDPLYPGGS 195          
BLAST of EY650337 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.191e-15
Identity = 56/160 (35.00%), Postives = 80/160 (50.00%), Query Frame = 2
Query:  200 GTRSVSVSAAAA--DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGXRWADIIKPGCVNTDPIFPNNS 616
            G +SV+ S  +    P+R L+   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG               +L +      ++  ++I +G  EG R A    P    TDPI+P  +
Sbjct:   50 GKKSVAASIDSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAG--GPLGEVTDPIYPGGN 206          
The following BLAST results are available for this feature:
BLAST of EY650337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB2B_PINSY8.895e-1735.80Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB21_SOYBN3.380e-1638.17Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB23_SOYBN5.766e-1635.67Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB23_POLMU5.766e-1638.19Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_WHEAT5.766e-1633.54Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_MAIZE9.835e-1634.72Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_CUCSA9.835e-1635.03Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB121_HORVU1.284e-1541.28Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB23_NICPL1.678e-1533.97Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB2A_PINSY2.191e-1535.00Chlorophyll a-b binding protein type 2 member 1A, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-009-H10-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650337 ID=EY650337; Name=EY650337; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGCAAACGCCAGTCATAATTTTGCTGAAAGCCTTTGCCTGG
TAGTAAAAATGGCTTCCGTTTGTGCTTCCCCTGCCGTTGCAGCCATCTCA
TCCCCCAGTTCTCAGAAGAGTAGATCAGTTGCGGGAGCAACAAAGGCTTC
TTTCCTTGGTGGGAAGAAGCTGAAATTGAGAAAAAACGGAGCAACAGCGG
GAACACGATCGGTTTCAGTGAGTGCGGCTGCAGCTGATCCTAACAGGCCT
CTCTGGTTCCCAGGCAGCACTCCTCCTGAATGGCTCGATGGTAGCCTCCC
CGGAGACTTCGGCTTCGATCCTCTTGGTCTTGGATCTGATCCTGAGACGC
TGAGATGGAACGTGCAATCAGAAATTGTGCACTGCAGATGGGCAATGTTA
GGAGCTGCAGGAATTTTCATTCCGGAATTGTTAACAAAACTTGGAATCCT
CAACACTCCATCCTGGTACACAGCTGGGGAGCTAGAGTACTTCACAGACA
CCACCACCCTGTTCATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGC
ANACGGTGGGCCGACATTATAAAGCCAGGCTGTGTGAACACTGACCCGAT
CTTCCCCAACAACAGCTCACCGGCACCGATGTTGGGTACCCANGTGGGCT
TTGGTTTGACCCACTTGCTGGGGATCCCGTTCGCCNGANAAGGTAAGGAG
CTGAGACTAAGGAATCANAAATGGANATGGCTATGTTGCTGGGATGGGGG
CTTGGTCCANCCATTTACACCGCACCGGCCCATTGACATCTCATGCTCAC
CTGCTGGACCTGGCATGCCCACGTTTTGCTGGCTCCCCCCAGTGAAAGAT
AACCACAAAGGGAAAAATTGGGCCANGGGAACTTGAAC
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