EY650335

Overview
NameEY650335
Unique NameEY650335
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650335 vs. ExPASy Swiss-Prot
Match: EFTU_DESAD (Elongation factor Tu OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=tuf PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.267e-16
Identity = 55/136 (40.44%), Postives = 74/136 (54.41%), Query Frame = 1
Query:   82 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLA 489
            K H+NI  IGH+D GK+T T   I K+ G+           A   +  +F     +DK   E+ERGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA
Sbjct:   10 KPHVNIGTIGHIDHGKTTLTA-AITKIAGL-----------AGNGDYVAFDE---IDKAPEEKERGITIATAHVEYETEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLA 123          
BLAST of EY650335 vs. ExPASy Swiss-Prot
Match: EFTU_CYAPA (Elongation factor Tu, cyanelle OS=Cyanophora paradoxa GN=tufA PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.267e-16
Identity = 49/136 (36.03%), Postives = 71/136 (52.21%), Query Frame = 1
Query:   82 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLA 489
            K H+NI  IGHVD GK+T T  +   L    K    ++++               +D    E+ RGITI+ A  ++ET + +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA
Sbjct:   10 KPHVNIGTIGHVDHGKTTLTAAITTALASQGKGKARKYDE---------------IDAAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLA 123          
BLAST of EY650335 vs. ExPASy Swiss-Prot
Match: EFTU_CHICK (Elongation factor Tu, mitochondrial (Fragment) OS=Gallus gallus GN=TUFM PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.267e-16
Identity = 50/138 (36.23%), Postives = 71/138 (51.45%), Query Frame = 1
Query:   76 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLA 489
            +++ H+N+  IGHVD GK+T T  +   L        +R+E                +DK   ER RGITI+ A  ++ T R +    D PGH D++KNMITGT+  D  +L++ +T G          QTREH LLA
Sbjct:   43 RDRPHVNVGTIGHVDHGKTTLTAAITKVLSESGGARFQRYED---------------IDKAPEERARGITINAAHVEYSTARRHYAHTDCPGHADYVKNMITGTAPLDGCILVVAATDGQMP-------QTREHLLLA 158          
BLAST of EY650335 vs. ExPASy Swiss-Prot
Match: EFTU_BDEBA (Elongation factor Tu OS=Bdellovibrio bacteriovorus GN=tuf PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.267e-16
Identity = 50/138 (36.23%), Postives = 69/138 (50.00%), Query Frame = 1
Query:   76 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLA 489
            + K H+NI  IGHVD GK+T T  +   L    K     +++               +DK   E+ RGITI     ++ET   +   +D PGH D++KNMITG +Q D A+L++ S  G          QTREH LLA
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTAAITTTLAASGKAQAMAYDQ---------------IDKSPEEKARGITISTTHVEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSSADGPMP-------QTREHILLA 123          
BLAST of EY650335 vs. ExPASy Swiss-Prot
Match: EFTU_BACWK (Elongation factor Tu OS=Bacillus weihenstephanensis (strain KBAB4) GN=tuf PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.267e-16
Identity = 55/142 (38.73%), Postives = 75/142 (52.82%), Query Frame = 1
Query:   76 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-TRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLA 489
            + K H+NI  IGHVD GK+T T  +   + K GG + R  ++                  +D    ERERGITI  A  ++ET TR+Y  V D PGH D++KNMITG +Q D  +L++ +  G          QTREH LL+
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLAKAGGAEARGYDQ------------------IDAAPEERERGITISTAHVEYETETRHYAHV-DCPGHADYVKNMITGAAQMDGGILVVSAADGPMP-------QTREHILLS 123          
BLAST of EY650335 vs. ExPASy Swiss-Prot
Match: EFTU_BACST (Elongation factor Tu OS=Bacillus stearothermophilus GN=tuf PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.267e-16
Identity = 52/138 (37.68%), Postives = 70/138 (50.72%), Query Frame = 1
Query:   76 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLA 489
            + K H+NI  IGHVD GK+T T  +   L               A+  K   K    +D    ERERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LL+
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITTVL---------------AKQGKAEAKAYDQIDAAPEERERGITISTAHVEYETEARHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLS 123          
BLAST of EY650335 vs. ExPASy Swiss-Prot
Match: EFTU_BACHK (Elongation factor Tu OS=Bacillus thuringiensis subsp. konkukian GN=tuf PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.267e-16
Identity = 55/142 (38.73%), Postives = 75/142 (52.82%), Query Frame = 1
Query:   76 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-TRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLA 489
            + K H+NI  IGHVD GK+T T  +   + K GG + R  ++                  +D    ERERGITI  A  ++ET TR+Y  V D PGH D++KNMITG +Q D  +L++ +  G          QTREH LL+
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLAKAGGAEARGYDQ------------------IDAAPEERERGITISTAHVEYETETRHYAHV-DCPGHADYVKNMITGAAQMDGGILVVSAADGPMP-------QTREHILLS 123          
BLAST of EY650335 vs. ExPASy Swiss-Prot
Match: EFTU_BACFR (Elongation factor Tu OS=Bacteroides fragilis GN=tuf PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.267e-16
Identity = 52/138 (37.68%), Postives = 76/138 (55.07%), Query Frame = 1
Query:   76 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLA 489
            + K H+NI  IGHVD GK+T T  +   L           +K  +E+  RSF     +D    E+ERGITI+ +  ++ET   +   +D PGH D++KNM+TG +Q D A++++ +T G          QTREH LLA
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLA----------KKGLSEL--RSFDS---IDNAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMVTGAAQMDGAIIVVAATDGPMP-------QTREHILLA 123          
BLAST of EY650335 vs. ExPASy Swiss-Prot
Match: EFTU_BACFN (Elongation factor Tu OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tuf PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.267e-16
Identity = 52/138 (37.68%), Postives = 76/138 (55.07%), Query Frame = 1
Query:   76 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLA 489
            + K H+NI  IGHVD GK+T T  +   L           +K  +E+  RSF     +D    E+ERGITI+ +  ++ET   +   +D PGH D++KNM+TG +Q D A++++ +T G          QTREH LLA
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLA----------KKGLSEL--RSFDS---IDNAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMVTGAAQMDGAIIVVAATDGPMP-------QTREHILLA 123          
BLAST of EY650335 vs. ExPASy Swiss-Prot
Match: EFTU_BACCZ (Elongation factor Tu OS=Bacillus cereus (strain ZK / E33L) GN=tuf PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.267e-16
Identity = 55/142 (38.73%), Postives = 75/142 (52.82%), Query Frame = 1
Query:   76 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-TRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLA 489
            + K H+NI  IGHVD GK+T T  +   + K GG + R  ++                  +D    ERERGITI  A  ++ET TR+Y  V D PGH D++KNMITG +Q D  +L++ +  G          QTREH LL+
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLAKAGGAEARGYDQ------------------IDAAPEERERGITISTAHVEYETETRHYAHV-DCPGHADYVKNMITGAAQMDGGILVVSAADGPMP-------QTREHILLS 123          
The following BLAST results are available for this feature:
BLAST of EY650335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_DESAD3.267e-1640.44Elongation factor Tu OS=Desulfovibrio salexigens (... [more]
EFTU_CYAPA3.267e-1636.03Elongation factor Tu, cyanelle OS=Cyanophora parad... [more]
EFTU_CHICK3.267e-1636.23Elongation factor Tu, mitochondrial (Fragment) OS=... [more]
EFTU_BDEBA3.267e-1636.23Elongation factor Tu OS=Bdellovibrio bacteriovorus... [more]
EFTU_BACWK3.267e-1638.73Elongation factor Tu OS=Bacillus weihenstephanensi... [more]
EFTU_BACST3.267e-1637.68Elongation factor Tu OS=Bacillus stearothermophilu... [more]
EFTU_BACHK3.267e-1638.73Elongation factor Tu OS=Bacillus thuringiensis sub... [more]
EFTU_BACFR3.267e-1637.68Elongation factor Tu OS=Bacteroides fragilis GN=tu... [more]
EFTU_BACFN3.267e-1637.68Elongation factor Tu OS=Bacteroides fragilis (stra... [more]
EFTU_BACCZ3.267e-1638.73Elongation factor Tu OS=Bacillus cereus (strain ZK... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-009-H08-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650335 ID=EY650335; Name=EY650335; organism=Citrus sinensis; type=EST; length=869bp
CCAGCGTCCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTAATAAGG
TTTTTTCTAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAACATTG
TGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTTG
ATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGAA
GGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTCG
ACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTG
TGGAAGTTCGAGACCACCAGGTACTACTGCACCGTCATTGATGCTCCTGG
ACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACT
GTGCCGTCCTTATCATTGACTCTACCACCGGTGGTTTTGAAGCTGGTATC
TCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTACCCTTGGT
GTGAAGCAGATGATTTGCTGCTGTAACAAGATGGATGCCACCACCCCCAA
GTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTACC
TGAAGAAGGGTGGGATACACCCCGAGAAAGTCCCATTCGTCCCATCTCTG
GTTTCGAGGGTGACACATGATTGAGAGGTCTACCANNCCTGACTGGTACA
NGGGTCCACCCNTGCTGGATGCTCTTGACATATCAATGAAGNGAAGGAGC
CCTNAAACAGCCCCTNCGTCTGCCACTCAGGACGTGTCAAGATTGTGGCA
TTGGAACCGTCCATGGGGTCCCGTGAAAACCGTGTGCCAAACCGGTTGGG
GGGGAACATGGGCCCCTTG
back to top