EY650170

Overview
NameEY650170
Unique NameEY650170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length957
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_SHEHH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella halifaxensis (strain HAW-EB4) GN=ispF PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.743e-37
Identity = 76/158 (48.10%), Postives = 106/158 (67.09%), Query Frame = 2
Query:  326 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLMK 799
            +  R+GHGFD+H+     PLI+GG++VP+E G  AHSDGDV LH + DAILGA+ L DIG+ FPD+DP++KGA S V ++   +L  + G+ + NLD T+I Q PK++P+ E IR  L+  L AD   +N+KA T EK    G K  IA   V+L++K
Sbjct:    1 MKIRIGHGFDVHKFGGEPPLILGGVDVPYEVGLIAHSDGDVALHAISDAILGAMALGDIGKHFPDTDPEFKGADSRVLLRHCYQLATDMGFSLSNLDVTIIAQAPKMAPHIEAIRKVLAADLVADINDINVKATTTEKLGFTGRKEGIAVEAVVLMIK 158          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_RALEH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=ispF PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.743e-37
Identity = 80/165 (48.48%), Postives = 107/165 (64.85%), Query Frame = 2
Query:  326 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLMKK*IND 814
            +PF  RVG G+D+H L PG  LI+GG+ +PH+RG   HSD D LLH V DA+ GA  L DIG+ FPD+D ++ GA S V ++EA R + EAGYEIGN+DAT+I Q PKL+P+   +  NL+E L       N+KAKT+EK    G +  I A   +LL +  + D
Sbjct:    2 MPFDIRVGQGYDVHALVPGRKLILGGVEIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDAQFAGADSRVLLREAARRVREAGYEIGNVDATVIAQAPKLAPHIGAMVANLAEDLGIARGRCNVKAKTNEKLGFEGRQEGIVAQAAVLLWRASVGD 166          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_PSEAB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ispF PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.277e-37
Identity = 72/156 (46.15%), Postives = 107/156 (68.59%), Query Frame = 2
Query:  335 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLMKK 802
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KGA S   ++  V ++ E G+++GN+DAT++ Q PK++P+ ET+R +++E L      VN+KA T E+    G +  IA H V LLM +
Sbjct:    2 RIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGSIAEDLGVAVDQVNVKATTTERLGFTGREEGIAVHAVALLMAR 157          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_GEOKA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacillus kaustophilus GN=ispF PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.277e-37
Identity = 77/156 (49.36%), Postives = 103/156 (66.03%), Query Frame = 2
Query:  332 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLMK 799
            FR+G GFD+H+L  G PLIIGG+ +P+E+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP++K A S+  +     L  + GY + N D T+I Q+PKL+PY E +R  ++ LL A+ + VN+KA T EK    G    IAA  V+LL K
Sbjct:    2 FRIGQGFDVHQLVEGRPLIIGGVTIPYEKGLLGHSDADVLLHAVADACLGAIGAGDIGRHFPDTDPRFKDADSAELLAHVWALARQEGYRLVNADCTIIAQKPKLAPYIEEMRAVIARLLEAERSQVNVKATTTEKLGFTGRGEGIAAQAVVLLQK 157          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_VIBVY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio vulnificus (strain YJ016) GN=ispF PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.974e-37
Identity = 74/156 (47.44%), Postives = 104/156 (66.67%), Query Frame = 2
Query:  335 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLMKK 802
            R+GHGFD+H+     P+IIGG+ VP+E+G  AHSDGDV LH + DA+LGA+   DIG+ FPD+D KWKGA S   +K+  R + E GY++GN D T+I Q PK++PY + +R  ++  L  D   +N+KA T E+    G K  IA   V+LL+K+
Sbjct:    3 RIGHGFDVHKFGGEGPVIIGGVAVPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFPDTDDKWKGADSRELLKDVYRRVKEQGYKLGNADVTIIAQAPKMAPYIDAMREAIAHDLETDIRNINVKATTTERLGFTGRKEGIATEAVVLLIKQ 158          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_PROM2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Prochlorococcus marinus (strain MIT 9215) GN=ispF PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.974e-37
Identity = 73/159 (45.91%), Postives = 107/159 (67.30%), Query Frame = 2
Query:  332 FRVGHGFDLHRLEPGYPLIIGGI--NVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLMKK 802
            FR+G+G+D+HRLE G  LIIGG+  N P   G + HSD DVL H ++DA+LGAL L DIG+ FP SD KWK   S + + + + L+ + G+EI N+D+ ++ +RPK+ PY E ++ NLS+ L  D + + +KA T+EK    G +  I+ H+V+LL KK
Sbjct:    8 FRIGNGYDIHRLEIGRKLIIGGVKLNHPDNLGLDGHSDADVLSHSIMDALLGALSLGDIGKYFPPSDEKWKDVDSLILLSKVIDLVRKQGWEINNIDSVIVAERPKIKPYVEIMKRNLSKTLKIDDSFIGIKATTNEKLGPEGREEGISCHSVVLLEKK 166          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_SHELP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ispF PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.884e-37
Identity = 75/153 (49.02%), Postives = 102/153 (66.67%), Query Frame = 2
Query:  335 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILL 793
            R+GHGFD+H+     PLI+GG+ VP++ G  AHSDGDV+LH + DAILGA+ L DIG+ FPD+DP +KGA S V ++   +L  + GY +GNLD T+I Q PK+ P+ + IR  LS  L +D   +N+KA T EK    G K  IA   V+L+
Sbjct:    4 RIGHGFDVHKFGGELPLILGGVEVPYDTGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDPDFKGADSRVLLRHCYQLALDKGYRLGNLDVTIIAQAPKMLPHIQAIRECLSADLESDIEAINVKATTTEKLGFTGRKEGIAVEAVVLM 156          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_RALSO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia solanacearum GN=ispF PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.884e-37
Identity = 74/158 (46.84%), Postives = 104/158 (65.82%), Query Frame = 2
Query:  326 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLMK 799
            +  R+G G+D+H L  G  LI+GG+ +PH RG   HSD D LLH + DA+ GA GL DIG+ FPD+DP + GA S V ++EAVR + EAGY++GN+DAT+I Q+PKL+P+   +  NL+  L   P   N+KAKT+EK    G +  I A   +L+ +
Sbjct:    4 MDIRIGQGYDVHALVEGRKLILGGVEIPHTRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDPAFAGADSRVLLREAVRRVREAGYDVGNVDATVIAQKPKLAPHVPGMVANLAADLGIAPGRCNVKAKTNEKLGFEGREDGIVAQAAVLIYR 161          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_PSEE4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas entomophila (strain L48) GN=ispF PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.884e-37
Identity = 72/154 (46.75%), Postives = 106/154 (68.83%), Query Frame = 2
Query:  335 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLM 796
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KGA S V ++  V ++D  G+++GN+DAT++ Q PK++P+ ET+R  ++  L  +   VN+KA T EK    G +  IA H V LL+
Sbjct:    2 RIGHGYDVHRFCDGDFITLGGVRIPHKYGLLAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPQFKGADSRVLLRHVVGIVDNKGWKVGNVDATIVAQAPKMAPHIETMRQQIAADLQVELDQVNVKATTEEKLGFTGREEGIAVHAVALLL 155          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_PORG3 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=ispF PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.884e-37
Identity = 71/156 (45.51%), Postives = 106/156 (67.95%), Query Frame = 2
Query:  329 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLM 796
            PFR+G GFD+HRL  GYPL +GG+ + H +G E HSD DVL+H + DA+LGA  L DIG  FP SDP++KG  S + +  A+ L+   GYE+GN+DAT+  ++PKL+P+   ++  L+E++  + + ++LKA T EK    G +  I+A+ V LL+
Sbjct:    4 PFRIGFGFDVHRLSEGYPLWMGGVRLEHSKGLEGHSDADVLIHAICDALLGAAALRDIGYHFPPSDPQYKGIDSKILLARAMELVRSQGYELGNIDATIAAEQPKLNPHIPDMQRVLAEVIQVEVSDISLKATTTEKLGFTGREEGISAYAVALLI 159          
The following BLAST results are available for this feature:
BLAST of EY650170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_SHEHH1.743e-3748.102-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RALEH1.743e-3748.482-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSEAB2.277e-3746.152-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOKA2.277e-3749.362-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_VIBVY2.974e-3747.442-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PROM22.974e-3745.912-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHELP3.884e-3749.022-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RALSO3.884e-3746.842-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSEE43.884e-3746.752-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PORG33.884e-3745.512-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-008-A08-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650170 ID=EY650170; Name=EY650170; organism=Citrus sinensis; type=EST; length=957bp
GGGNCCGTTTTTACGCCCCGACCCACGCGTCCGTACATACCTAGCAGACA
GCATTTCACGAACAGCGCCTCTCCTCTCTTCGTAAAATTAGATGGTGTTG
ACGATGGCCGCTCAATCATACACCACCACTCCTCTCCACAGCAAAATTAC
GAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCCTCGTAGCTTAA
CCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGCCTCGTATTTCA
GTTTCAGCTGCAGCCATTTCTTCCATCGAAGTTAAAGAGTCATCGGCTTC
GATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGTGGGCCACGGGT
TTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCATCGGTGGAATC
AATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGACGGTGATGTTTT
GCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGGTCTTCCTGATA
TTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGGGTGCACCATCC
TCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAGGCCGGCTATGA
GATTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACCAAAATTGAGCC
CATACAATGAGACTATCCGAACCAACTTGTCTGAACTGCTANGAGCAGAC
CCCACCGTTGTAAATCTGAAAGCGAAAACTCATGAAAAAGNTGATAGCCC
TGGTGAAAAATCGAGTATTGCAGCTCACACTGTGATCCTTCTCATGAAGA
AGTAAATAAACGATTTGGGAATTGTCTNAATGTAGCAGNTGNATCCTATT
ATCATTGGTGGATTGNATTCTGCTTACAAGACTATTACTGGGATAGATTC
CATGATAGGTGTNGTTCATACTTACATGCTTCAGTATGGCAGGTCTTNAC
TAAAAAA
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