EY650170

Overview
NameEY650170
Unique NameEY650170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length957
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_MYCA1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium avium (strain 104) GN=ispF PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.141e-19
Identity = 53/154 (34.42%), Postives = 78/154 (50.65%), Query Frame = 2
Query:  335 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLM 796
            R+G G D+H ++PG P  + G+      GC  HSDGDV  H + DA+L A GL D+G +F   DP+W G   +  ++    L    G+ +GN    +I  RPK+ P     +  LSELL A    V++ A T +     G    +AA    L++
Sbjct:    6 RIGLGVDVHPIQPGRPCRLLGLLFDDADGCAGHSDGDVGAHALCDAVLSAAGLGDVGAVFGVDDPRWAGVSGADMLRHVADLTARHGFRVGNAAVQVIGNRPKVGPRRAEAQRVLSELLGAP---VSVAATTTDGLGLTGRGEGLAAIATALVV 156          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPDF_CLAM3 (Bifunctional enzyme ispD/ispF OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=ispDF PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.652e-19
Identity = 56/153 (36.60%), Postives = 78/153 (50.98%), Query Frame = 2
Query:  335 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILL 793
            R G G D+H ++   PL + G++ P E G   HSDGD + H + DA+L A GL DIG IF   DP+  GA   VF++    L+ +AGY I N+   ++  RPKLSP        LS  + A    V+L   T +     G    +AA    L+
Sbjct:  258 RSGIGTDVHAVDASQPLWLAGLHWPGEAGLAGHSDGDAVSHAMCDALLSAAGLGDIGGIFGTDDPELDGAHGEVFLRRTAELVRDAGYRIVNVAVQVMAVRPKLSPRRAEAERILSAAVGAP---VSLAGTTTDGLGFTGRGDGVAAVATALV 407          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_PROAC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Propionibacterium acnes GN=ispF PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.038e-18
Identity = 51/151 (33.77%), Postives = 78/151 (51.66%), Query Frame = 2
Query:  326 LPFRVGHGFDLHRLEPGYPLIIGGINVPHER-GCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAA 775
            +  R G G D+H+L  G P+ + G++ P E  G   HSDGDV  H + DA+L A GL DIG IF  +DP+W GA     +   V L+   G+ I N+   ++ QRP+++         L++ + A    V++ A T +     G    +AA
Sbjct:    2 IEIRTGIGTDVHQLSAGVPMHVAGLSFPDETVGLVGHSDGDVACHAICDALLSATGLGDIGSIFGTADPQWAGAAGVALLGHVVALVTGEGWTIQNVAVQVVGQRPRMAARRAEAEAALAQTVGAP---VSVSATTTDHLGFTGRGEGVAA 149          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_KOSOT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=ispF PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.274e-18
Identity = 58/158 (36.71%), Postives = 90/158 (56.96%), Query Frame = 2
Query:  332 FRVGHGFDLHRLEPGYP-LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAG-YEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLMK 799
            +RVG GFD H LE     L +GG+ V  E     HSDGD L+H +VDAILGA    +IG  FP+++   +G  S+ F+ E +R    AG YEI N+D+ +I+ + +++P+ E IR  L+ +L      +N+K K+          +S++ + V +L K
Sbjct:    2 YRVGIGFDAHPLEANKKGLYLGGVKVSEEYSSIGHSDGDALIHAIVDAILGATNAGNIGIWFPENEEN-RGRRSTEFL-EIIRKKILAGKYEILNIDSVIIIDKVRMNPHIENIRLKLARILGISKGNINVKPKSGNTLYG----NSVSVYAVCMLKK 153          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_CORGL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium glutamicum GN=ispF PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.274e-18
Identity = 54/155 (34.84%), Postives = 77/155 (49.68%), Query Frame = 2
Query:  335 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLMK 799
            RVG   D H++E G P  I  +      GCE HSDGDV+ H +VDA+L A GL D+G       P++ G   +  +KE   L+   GY IGN+ A L+ Q PK  P  E  +  +SE++ A     +L A T +     G     A+    ++ K
Sbjct:    8 RVGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVVAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLKEVRELLSAHGYVIGNVAAQLVGQTPKFGPRREEAQQVISEIIGAP---CSLSATTTDHMGFTGRSEGRASVATAVVWK 159          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_CORGB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium glutamicum (strain R) GN=ispF PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.996e-18
Identity = 52/155 (33.55%), Postives = 78/155 (50.32%), Query Frame = 2
Query:  335 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLMK 799
            RVG   D H++E G P  I  +      GCE HSDGDV+ H +VDA+L A GL D+G       P++ G   +  +KE   L++  G+ IGN+ A L+ Q PK  P  E  +  +S+++ A     +L A T +     G     A+    ++ K
Sbjct:    8 RVGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVIAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLKEVRELLESRGFVIGNVAAQLVGQTPKFGPRREEAQQVISDIIGAP---CSLSATTTDHMGFTGRSEGRASVATAVVWK 159          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_FRASC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia sp. (strain CcI3) GN=ispF PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.175e-17
Identity = 53/155 (34.19%), Postives = 79/155 (50.97%), Query Frame = 2
Query:  335 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLMK 799
            RVG G D+H    G P  +  +  P E G   HSDGDV  H   DA+L A  L D+G++F    P++ GA  +V + E  RL+  AG+ IGN+   +I  RP+++   E  +  +S  L A    V+L A T +     G    +AA    L+++
Sbjct:    8 RVGVGVDVHPFAAGRPCWVACLEWPGETGLAGHSDGDVAAHAACDALLTASCLGDLGRVFGTDRPEYAGASGAVLLAETARLLGAAGWAIGNVSVQVIGNRPRMAGRREDAQKAMSVALGAS---VSLSATTTDGLGLTGRGEGLAAIATALVIR 159          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_FRASN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia sp. (strain EAN1pec) GN=ispF PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.004e-17
Identity = 52/155 (33.55%), Postives = 76/155 (49.03%), Query Frame = 2
Query:  335 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLMK 799
            RVG G D+H  E G    +  +  P E G   HSDGDV  H   DA+L A G+ D+G +F    P+W GA  +  + E  RL+ E G+ IGN+   ++  RP+++      +  +S  L A    VNL A T +     G    +AA    L+ +
Sbjct:    8 RVGTGVDVHPFEQGRECWVACLLWPGETGLAGHSDGDVASHAACDALLTASGIGDLGAVFGTGRPEWSGASGAALLGETARLLAEGGWLIGNVAVQVVGNRPRMAARRVEAQEAMSAALGAP---VNLSATTTDGLGLTGRGEGLAAIATALVTR 159          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_SALTO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ispF PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.617e-17
Identity = 51/153 (33.33%), Postives = 73/153 (47.71%), Query Frame = 2
Query:  335 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILL 793
            RV  G D+H  E G P  + G++ P + G   HSD DV  H   +A+L A  L D+G  F    P+W GA     + E+ R +  AGY IGN+   +I  RPK+ P     +  LS  + A    V++ A T +    PG    +    V L+
Sbjct:    6 RVAIGVDMHAFESGRPCWVAGLHWPGQDGLAGHSDADVAAHAACNALLSAAELGDLGANFGVGQPEWSGASGVALLSESARRVRTAGYTIGNVSVQVIGNRPKIGPRRAEAQQVLSAAVGAP---VSVSAATTDGLGFPGRDEGLTGIAVALV 155          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_FRAAA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia alni (strain ACN14a) GN=ispF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.418e-17
Identity = 52/155 (33.55%), Postives = 78/155 (50.32%), Query Frame = 2
Query:  335 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLMK 799
            RVG G D+H    G P  +  +  P E G   HSDGDV  H   DA+L A  L D+G++F    P++ GA  +V + E  RL+   G+ IGN+   +I  RP+++   E  +  +S  L A    V+L A T +     G    +AA    L+++
Sbjct:    8 RVGIGVDVHPFAAGRPCWVACLEWPGETGLAGHSDGDVAAHATCDALLTASCLGDLGKVFGTDRPEYAGASGAVLLAETARLLAVGGWVIGNVSVQVIGNRPRMAARREQAQAAMSAALGAS---VSLSATTTDGLGLTGRGEGLAAIATALVVR 159          
The following BLAST results are available for this feature:
BLAST of EY650170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_MYCA12.141e-1934.422-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_CLAM33.652e-1936.60Bifunctional enzyme ispD/ispF OS=Clavibacter michi... [more]
ISPF_PROAC4.038e-1833.772-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_KOSOT5.274e-1836.712-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CORGL5.274e-1834.842-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CORGB8.996e-1833.552-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_FRASC1.175e-1734.192-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_FRASN2.004e-1733.552-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALTO2.617e-1733.332-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_FRAAA3.418e-1733.552-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-008-A08-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650170 ID=EY650170; Name=EY650170; organism=Citrus sinensis; type=EST; length=957bp
GGGNCCGTTTTTACGCCCCGACCCACGCGTCCGTACATACCTAGCAGACA
GCATTTCACGAACAGCGCCTCTCCTCTCTTCGTAAAATTAGATGGTGTTG
ACGATGGCCGCTCAATCATACACCACCACTCCTCTCCACAGCAAAATTAC
GAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCCTCGTAGCTTAA
CCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGCCTCGTATTTCA
GTTTCAGCTGCAGCCATTTCTTCCATCGAAGTTAAAGAGTCATCGGCTTC
GATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGTGGGCCACGGGT
TTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCATCGGTGGAATC
AATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGACGGTGATGTTTT
GCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGGTCTTCCTGATA
TTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGGGTGCACCATCC
TCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAGGCCGGCTATGA
GATTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACCAAAATTGAGCC
CATACAATGAGACTATCCGAACCAACTTGTCTGAACTGCTANGAGCAGAC
CCCACCGTTGTAAATCTGAAAGCGAAAACTCATGAAAAAGNTGATAGCCC
TGGTGAAAAATCGAGTATTGCAGCTCACACTGTGATCCTTCTCATGAAGA
AGTAAATAAACGATTTGGGAATTGTCTNAATGTAGCAGNTGNATCCTATT
ATCATTGGTGGATTGNATTCTGCTTACAAGACTATTACTGGGATAGATTC
CATGATAGGTGTNGTTCATACTTACATGCTTCAGTATGGCAGGTCTTNAC
TAAAAAA
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