EY650170

Overview
NameEY650170
Unique NameEY650170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length957
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_SYNP6 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispF PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.928e-36
Identity = 69/156 (44.23%), Postives = 105/156 (67.31%), Query Frame = 2
Query:  332 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLMK 799
            FR+G+G+D+HRL  G PLI+GGI + H  G + HSD DVL H ++DA+LGAL L DIG  FP +DP+WKGA S   + +  +L+ + G+ IGNLD+ ++ ++PKL P+   +R  L+++L  +P  + +KA T+EK    G +  I A+ V LL++
Sbjct:    4 FRIGNGYDIHRLVEGRPLILGGIQLEHSLGLDGHSDADVLTHAIMDALLGALSLGDIGHYFPPTDPQWKGADSLKLLAQVNQLIRDRGWTIGNLDSVVVAEQPKLKPHIAAMRDRLAKVLELEPDQIGIKATTNEKLGPTGREEGICAYAVALLVR 159          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_SYNE7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=ispF PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.928e-36
Identity = 69/156 (44.23%), Postives = 105/156 (67.31%), Query Frame = 2
Query:  332 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLMK 799
            FR+G+G+D+HRL  G PLI+GGI + H  G + HSD DVL H ++DA+LGAL L DIG  FP +DP+WKGA S   + +  +L+ + G+ IGNLD+ ++ ++PKL P+   +R  L+++L  +P  + +KA T+EK    G +  I A+ V LL++
Sbjct:    4 FRIGNGYDIHRLVEGRPLILGGIQLEHSLGLDGHSDADVLTHAIMDALLGALSLGDIGHYFPPTDPQWKGADSLKLLAQVNQLIRDRGWTIGNLDSVVVAEQPKLKPHIAAMRDRLAKVLELEPDQIGIKATTNEKLGPTGREEGICAYAVALLVR 159          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_LARHH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=ispF PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.928e-36
Identity = 73/156 (46.79%), Postives = 106/156 (67.95%), Query Frame = 2
Query:  335 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLMKK 802
            R+G G+D+HRL  G PL++GG+ +P ++G + HSD D L H + DA+ GA  L DIG+ FPD+D ++KGA S V ++EAVR + EAG++I N+D+T+I Q P+L+PY E +R++L+  L   P  VN+KAKT E+    G    IAA  V LL  +
Sbjct:    4 RIGQGWDVHRLVEGRPLVLGGVTIPFDKGLDGHSDADALCHAITDALFGAAALGDIGRHFPDTDLEFKGADSRVLLREAVRRVREAGFDIVNVDSTVIAQAPRLAPYVEAMRSHLAADLGLSPDRVNVKAKTSERLGHLGRGEGIAADAVCLLQSR 159          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_HAES2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Haemophilus somnus (strain 2336) GN=ispF PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.928e-36
Identity = 72/156 (46.15%), Postives = 107/156 (68.59%), Query Frame = 2
Query:  335 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLMKK 802
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA+ L DIG++FPD+D ++KGA S   ++ A + + + GY++GN+D T+I Q PK+ PY +++RT +++ L  D   VN+KA T EK    G    IA   V+LL+K+
Sbjct:    3 RIGHGFDVHAFGGEGPIIIGGVAIPYEKGLVAHSDGDVALHALTDALLGAMALGDIGKLFPDTDIQYKGADSRRLLRTAYQAILDKGYQVGNVDITIIAQAPKMRPYIDSMRTVIAQDLHCDIEQVNVKATTTEKLGFTGRSEGIACEAVVLLIKQ 158          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_AZOVD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ispF PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.928e-36
Identity = 72/154 (46.75%), Postives = 103/154 (66.88%), Query Frame = 2
Query:  335 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLM 796
            R+GHG+D+HR   G  + +GG+ +PH  G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KG  S V ++  V L+ E G+ +GN+DAT++ Q PK++P+ E +R +++E L      VN+KA T EK    G +  IA H V LL+
Sbjct:    2 RIGHGYDVHRFAEGDFVTLGGVRIPHRFGLLAHSDGDVLLHALCDALLGAAALGDIGRHFPDTDPRFKGVDSRVLLRHVVALVREKGWRVGNVDATIVAQAPKMAPHIERMRLSIAEDLQVGVEQVNVKATTTEKLGFTGREEGIAVHAVALLL 155          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_ALHEH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=ispF PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.928e-36
Identity = 75/156 (48.08%), Postives = 104/156 (66.67%), Query Frame = 2
Query:  335 RVGHGFDLHRL-EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLMK 799
            RVG GFD HR  EPG PLI+GG+ VPHERG  AHSDGDVL+H V D +LGA G  D+G  FPDSD  +KG  S + +++A++ +   G+ + N+DATLI Q P+++P+   +R +L+  L   P+ VN+KA T E+   PG    IAA  V+L+ +
Sbjct:    3 RVGQGFDAHRFGEPGTPLILGGVQVPHERGLAAHSDGDVLMHAVTDGLLGAAGEGDLGTHFPDSDDAYKGIDSRILLRDALQRVRAGGWRVVNVDATLIAQAPRMNPHVGAMRDHLAADLEVAPSAVNVKATTTERMGFPGRGEGIAAMAVVLIAR 158          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_ACTSZ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=ispF PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.928e-36
Identity = 74/155 (47.74%), Postives = 102/155 (65.81%), Query Frame = 2
Query:  335 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLMK 799
            R+GHGFD+H L    PLIIGG+ VP+  G  AHSDGDV+LH + DA+LGA+ L DIG++FPD+D ++K   S + ++EA R + E GY +GN+D T+I Q PK+ PY + +R  ++E L      VN+KA T EK    G    IA   V+LL+K
Sbjct:    3 RIGHGFDVHALGEARPLIIGGVKVPYHTGFIAHSDGDVVLHALTDALLGAVALGDIGKLFPDTDMQFKDIDSRILLREAFRRVKEKGYAVGNVDVTIIAQAPKMRPYIDAMRAVIAEDLQCGIDQVNVKATTTEKLGFTGRSEGIATEAVVLLVK 157          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_PSEMY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas mendocina (strain ymp) GN=ispF PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.518e-36
Identity = 72/155 (46.45%), Postives = 105/155 (67.74%), Query Frame = 2
Query:  335 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLMK 799
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA+ L DIG+ FPD+DP +KGA S   ++  + L+   GY +GN+DAT+I Q PK++P+ +++R  ++E L  +   VN+KA T EK    G +  IA H V LL+K
Sbjct:    2 RIGHGYDVHRFGEGDFITLGGVRIPHKFGLVAHSDGDVLLHALSDALLGAVALGDIGKHFPDTDPTFKGADSRALLRHVMSLVRGKGYAVGNVDATIIAQAPKMAPHIQSMRERIAEDLGVELDQVNVKATTTEKLGFTGREEGIAVHAVALLVK 156          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_CYAP4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispF PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.518e-36
Identity = 68/154 (44.16%), Postives = 101/154 (65.58%), Query Frame = 2
Query:  335 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILLM 796
            R+G+G+D+HRL    PLI+GG+N+PHE G   HSD DVL H ++DA+LGAL L DIG  FP  DP+W GA S   + +  +L+ E G+++GN+D+ ++ +RPKL P+   +R  LS +L   P  + +KA T+EK    G +  I A+ V +L+
Sbjct:    5 RIGNGYDIHRLVSDRPLILGGVNIPHELGLLGHSDADVLTHAIMDALLGALSLGDIGHYFPPGDPQWAGADSLKLLAQVHQLVQERGWQVGNIDSVIVAERPKLKPHLAAMRDRLSAVLKVKPDQIGIKATTNEKLGPEGREEGICAYAVAVLV 158          
BLAST of EY650170 vs. ExPASy Swiss-Prot
Match: ISPF_CALS8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=ispF PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.518e-36
Identity = 68/154 (44.16%), Postives = 104/154 (67.53%), Query Frame = 2
Query:  332 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYNETIRTNLSELLXADPTVVNLKAKTHEKXDSPGEKSSIAAHTVILL 793
            F+VG GFD+HR      LI+GG+ +P E+G   HSD DVL+H ++DAILGA+G  DIG++FPD+D K+K   S V +KE  +L+   G  I N+D T++ Q+PK+SPY + ++TN+++ L  + T VN+K KT E     G +  ++A+ ++LL
Sbjct:    2 FKVGFGFDVHRFSEDRKLILGGVEIPFEKGLLGHSDADVLIHAIIDAILGAMGENDIGRLFPDTDMKYKDISSIVLLKEVSKLLKNKGMSIINIDTTIVAQKPKISPYTDEMKTNIAKALNIEKTQVNIKGKTTEGLGFEGREEGVSAYAIVLL 155          
The following BLAST results are available for this feature:
BLAST of EY650170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_SYNP61.928e-3644.232-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SYNE71.928e-3644.232-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LARHH1.928e-3646.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_HAES21.928e-3646.152-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_AZOVD1.928e-3646.752-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ALHEH1.928e-3648.082-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ACTSZ1.928e-3647.742-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSEMY2.518e-3646.452-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CYAP42.518e-3644.162-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CALS82.518e-3644.162-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-008-A08-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650170 ID=EY650170; Name=EY650170; organism=Citrus sinensis; type=EST; length=957bp
GGGNCCGTTTTTACGCCCCGACCCACGCGTCCGTACATACCTAGCAGACA
GCATTTCACGAACAGCGCCTCTCCTCTCTTCGTAAAATTAGATGGTGTTG
ACGATGGCCGCTCAATCATACACCACCACTCCTCTCCACAGCAAAATTAC
GAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCCTCGTAGCTTAA
CCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGCCTCGTATTTCA
GTTTCAGCTGCAGCCATTTCTTCCATCGAAGTTAAAGAGTCATCGGCTTC
GATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGTGGGCCACGGGT
TTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCATCGGTGGAATC
AATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGACGGTGATGTTTT
GCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGGTCTTCCTGATA
TTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGGGTGCACCATCC
TCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAGGCCGGCTATGA
GATTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACCAAAATTGAGCC
CATACAATGAGACTATCCGAACCAACTTGTCTGAACTGCTANGAGCAGAC
CCCACCGTTGTAAATCTGAAAGCGAAAACTCATGAAAAAGNTGATAGCCC
TGGTGAAAAATCGAGTATTGCAGCTCACACTGTGATCCTTCTCATGAAGA
AGTAAATAAACGATTTGGGAATTGTCTNAATGTAGCAGNTGNATCCTATT
ATCATTGGTGGATTGNATTCTGCTTACAAGACTATTACTGGGATAGATTC
CATGATAGGTGTNGTTCATACTTACATGCTTCAGTATGGCAGGTCTTNAC
TAAAAAA
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