EY650153

Overview
NameEY650153
Unique NameEY650153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length954
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS2_THIFE (Ribulose bisphosphate carboxylase small chain 2 OS=Thiobacillus ferrooxidans GN=cbbS2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.398e-12
Identity = 31/91 (34.07%), Postives = 50/91 (54.95%), Query Frame = 3 
Query:  273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQ 545
            L+ + + ++++Y++  GW P +E            H  P   +G YW MWKLPM+G TD   +L E        PH+ VRI+G+DN +++Q
Sbjct:   28 LTADEIRQQVAYIVSKGWNPAVE------------HTEPENAFGNYWYMWKLPMFGETDVDTILKEAERCHKRNPHNHVRIVGYDNFKQSQ 106

HSP 2 Score: 21.557 bits (44), Expect = 3.398e-12
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 2 
Query:  242 KFDTLSYLP 268
            KF+TLSYLP
Sbjct:   18 KFETLSYLP 26
[Close]
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.635e-11
Identity = 32/100 (32.00%), Postives = 55/100 (55.00%), Query Frame = 3 
Query:  273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANP 572
            L+D  + K++ Y+L  G+IP +EF            N        YWT+WKLP++G   +  VL EV   +++YP  ++R++GFDN+++ Q +  +   P
Sbjct:   19 LTDVQIEKQVQYILSQGYIPAVEF------------NEVSEPTELYWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRVVGFDNIKQCQILSFIVHKP 106
The following BLAST results are available for this feature:
BLAST of EY650153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RBS2_THIFE3.398e-1234.07Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_ANASP1.635e-1132.00Ribulose bisphosphate carboxylase small chain OS=A... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-H02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650153 ID=EY650153; Name=EY650153; organism=Citrus sinensis; type=EST; length=954bp
CCACGCGTCCGGCTACAATAATGATCATGTACCAATGGGGGGGTGGGGGG
GCTCATCGACCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCACGCC
AGCATGGTCGCCCCCTTTACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGC
AGCCAATAATACCAACAATGACATTACTTTCATTGCAAGCAACTGCTGAA
GAGGCCAATGCATGAATGTGTGGCCACCAACTGGCTTGAATAAGTTCGAT
ACTCTCTCATACCTACCGAACACTGTCCGATGAATCTTTGCTCAAGGAAA
TCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGCTG
GAGAAAGGATGGGTGTACCGTGAGCACCACAACTGACCAGGATTCTACTA
TGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATG
CGACACATGTTTTGAATGAGGTTGGGGAGGTCCAGAACGAATACCCACAT
TCATTCGTTCGAATTATCGGATTTGACAACATGCGTGAAGCGCAGTGCAT
CATTTTGCTTGCTGCCAACCCACCATGCGTCTATGTTCCCATTGATATTG
GCGGAACCACCCATGCAATCTTGGTGACTATTATGATGTGTAACCCCCAT
ATGATCATTCGATCAATGGGGGTTATGGCTGCGTTGAATTTGACCTAGGC
GGCGGGCGCTGGTGCCTAAACTATTTGGTTACTCCCGAGTTTGCCTGTCC
GTTATATACATGGAATAAATAAAGGCCTTGTGGTGATTTATTAATCAGGG
CCTCCGATGTCCAATTAATGAGGTGCATTCTCGGAATAAAAAGGCTTCTA
TGTTTCTAAAAAAAAAGAGAGGGCGGGCGTCTCAAAGAATCCACTTAGTT
CCCGGCGTTGCAAGCTTACTCTGATATGTGGACCTAAATCAATAACGGCC
GGGG
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