EY650153

Overview
NameEY650153
Unique NameEY650153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length954
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.731e-41
Identity = 58/101 (57.43%), Postives = 76/101 (75.25%), Query Frame = 3
Query:  273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANPP 575
            LS E LLK++ YL+RS W+PCLEF  + G+++REH+  PG+Y GRYWTMWKLPM+GC   T V+ EV EV+ EYP  + RIIGFDNMR+ Q +  +A+ PP
Sbjct:   68 LSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKPP 167          

HSP 2 Score: 58.151 bits (139), Expect = 2.731e-41
Identity = 28/57 (49.12%), Postives = 36/57 (63.16%), Query Frame = 2
Query:   98 ASMVAPFTGLKSSSAFPAANNTNNDITFIASNC*RGQCMNVWPPTGLNKFDTLSYLP 268
            A+ VAPF GLKS++  P +  +N       SN  R +CM VWP  G+ KF+TLSYLP
Sbjct:   10 ATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLP 66          
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.026e-40
Identity = 56/101 (55.45%), Postives = 78/101 (77.23%), Query Frame = 3
Query:  270 TLSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANP 572
            TL++E L+KE+ YLLR+ W+PCLEF+LE G + R+++  PG+Y GRYW MWKLPM+GCT+A+ V+NEV E    YP +F+R+IGFDN+R+ QCI  +   P
Sbjct:   71 TLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170          

HSP 2 Score: 55.4546 bits (132), Expect = 1.026e-40
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 2
Query:   74 ANRASLAHASMVAPFTGLKSSSAFPAANNTNNDITF----IASNC*RGQCMNVWPPTGLNKFDTLSYLP 268
            A  A    A++V+ FTGLKS++ FP++   +N          SN  R +CM VWPP G  KF+TLSYLP
Sbjct:    2 ATGAGAGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLP 70          
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.526e-40
Identity = 57/101 (56.44%), Postives = 74/101 (73.27%), Query Frame = 3
Query:  273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANPP 575
            LS + LLK++ YLLR+GWIPCLEF  + G+VYRE+   P +Y GRYWTMWKLPM+GC DAT V  E+ E    YP +F R+IGFDN+++ QC+  +A  PP
Sbjct:   68 LSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKPP 167          

HSP 2 Score: 55.4546 bits (132), Expect = 8.526e-40
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 2
Query:   98 ASMVAPFTGLKSSSAFPAANNTNNDITFIASNC*RGQCMNVWPPTGLNKFDTLSYLP 268
            A+ VAPF GLKS+++ P A  ++  +  + SN  R +CM VWP  G  KF+TLSYLP
Sbjct:   11 ATAVAPFQGLKSTASLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLP 66          
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.451e-39
Identity = 56/100 (56.00%), Postives = 75/100 (75.00%), Query Frame = 3
Query:  273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANP 572
            L+ E L+KE+ YLL++ W+PCLEFE E G + R + N PG+Y GRYW MWKLPM+GCT+A+ VLNEV E    YP++F+R+IGFDN+R+ QCI  +   P
Sbjct:   88 LTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186          

HSP 2 Score: 53.5286 bits (127), Expect = 2.451e-39
Identity = 29/76 (38.16%), Postives = 43/76 (56.58%), Query Frame = 2
Query:   53 SSTTVATANRASLAHASMVAPFTGLKSSSAFPAANNTNNDITF----IASNC*RGQCMNVWPPTGLNKFDTLSYLP 268
            ++   A A  +   ++++V+ FTGLKS + FP++   +N          SN  R +CM VWPP    KF+TLSYLP
Sbjct:   11 TAAVAAVAAPSKTGNSNVVSAFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLP 86          
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.214e-38
Identity = 60/100 (60.00%), Postives = 75/100 (75.00%), Query Frame = 3
Query:  273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANP 572
            L+ + LLKE+ YLLR GW+PCLEFEL KG+VY EH+  P +Y GRYWTMWKLPM+G TD   V+ EV EV   YP +FVR+IGF+N+R+ QCI  +A  P
Sbjct:   34 LTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133          

HSP 2 Score: 45.0542 bits (105), Expect = 1.214e-38
Identity = 23/39 (58.97%), Postives = 25/39 (64.10%), Query Frame = 2
Query:  164 NNDITFIASNC*RGQCMNVWPPTGLNKFDTLSYLPNTVR 280
            N DIT   SN  R +CM VWPP G  KF+TLSYLP   R
Sbjct:    1 NTDIT---SNGERVKCMQVWPPIGKKKFETLSYLPPLTR 36          
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.617e-35
Identity = 64/101 (63.37%), Postives = 83/101 (82.18%), Query Frame = 3
Query:  273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANPP 575
            LS E+LLK++ YL+RS W+PCLEF  + G+++REH+  PG+Y GRYWTMWKLPM+GCTDAT V+NEV EV+ EYP ++VRIIGFDNMR+ QC+  +A  PP
Sbjct:    6 LSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPP 105          
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.639e-34
Identity = 53/100 (53.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:  273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANP 572
            L+ E LLK++ YLLR+ W+PCLEF  E G+VYRE+   P +Y GRYWTMWKLPM+GCTDA+ V  E+ E    YP     I+GFDN+R+ Q +  +A  P
Sbjct:   67 LTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIAYKP 164          

HSP 2 Score: 54.299 bits (129), Expect = 1.639e-34
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 2
Query:   98 ASMVAPFTGLKSSSAFPAANNTNNDITFIASNC*RGQCMNVWPPTGLNKFDTLSYLP 268
            A+  APF GLKS+++ P A  +   +  + SN  R +CM VWP  G  KF+TLSYLP
Sbjct:   10 ATAAAPFQGLKSTASLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLP 65          
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.608e-29
Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = 3
Query:  273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANP 572
            L+ E LL E++YLL  GWIP LEFE++ G+VYREH   PG+Y GRYWTMWKLPM+G TD   V+NEV EV+   P +FVR IGF++ RE QCI  +A  P
Sbjct:   21 LTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKP 120          
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.559e-28
Identity = 49/101 (48.51%), Postives = 69/101 (68.32%), Query Frame = 3
Query:  273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEY-PHSFVRIIGFDNMREAQCIILLAANP 572
            LS ++L K+I Y+++SGW PC+EF+++ G V RE    PG+Y GRYWTMWKLPM+GCTD+  VL E+ E +  Y    ++R +GFDN R+ QC   +   P
Sbjct:   79 LSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178          

HSP 2 Score: 34.2686 bits (77), Expect = 9.559e-28
Identity = 22/72 (30.56%), Postives = 31/72 (43.06%), Query Frame = 2
Query:   53 SSTTVATANRASLAHASMVAPFTGLKSSSAFPAANNTNNDITFIASNC*RGQCMNVWPPTGLNKFDTLSYLP 268
            +S  V T   AS A  +  +    +++          +   T   +N  R  CM VW P    KF+TLSYLP
Sbjct:    6 ASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLP 77          
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.432e-25
Identity = 49/77 (63.64%), Postives = 61/77 (79.22%), Query Frame = 3
Query:  345 ELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANPP 575
            ELE G+VYREH + PG+Y GRYWTMWKLP++GCTD+  VL EV E + EYP++F+RIIGFDN R+ QCI  +A  PP
Sbjct:    1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77          
The following BLAST results are available for this feature:
BLAST of EY650153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RBS_AEGTA2.731e-4157.43Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PINTH1.026e-4055.45Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MAIZE8.526e-4056.44Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA2.451e-3956.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_PEA1.214e-3860.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_WHEAT3.617e-3563.37Ribulose bisphosphate carboxylase small chain clon... [more]
RBS_SACHY1.639e-3453.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL6.608e-2959.00Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_MARPA9.559e-2848.51Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SINAL4.432e-2563.64Ribulose bisphosphate carboxylase small chain (Fra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-H02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650153 ID=EY650153; Name=EY650153; organism=Citrus sinensis; type=EST; length=954bp
CCACGCGTCCGGCTACAATAATGATCATGTACCAATGGGGGGGTGGGGGG
GCTCATCGACCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCACGCC
AGCATGGTCGCCCCCTTTACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGC
AGCCAATAATACCAACAATGACATTACTTTCATTGCAAGCAACTGCTGAA
GAGGCCAATGCATGAATGTGTGGCCACCAACTGGCTTGAATAAGTTCGAT
ACTCTCTCATACCTACCGAACACTGTCCGATGAATCTTTGCTCAAGGAAA
TCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGCTG
GAGAAAGGATGGGTGTACCGTGAGCACCACAACTGACCAGGATTCTACTA
TGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATG
CGACACATGTTTTGAATGAGGTTGGGGAGGTCCAGAACGAATACCCACAT
TCATTCGTTCGAATTATCGGATTTGACAACATGCGTGAAGCGCAGTGCAT
CATTTTGCTTGCTGCCAACCCACCATGCGTCTATGTTCCCATTGATATTG
GCGGAACCACCCATGCAATCTTGGTGACTATTATGATGTGTAACCCCCAT
ATGATCATTCGATCAATGGGGGTTATGGCTGCGTTGAATTTGACCTAGGC
GGCGGGCGCTGGTGCCTAAACTATTTGGTTACTCCCGAGTTTGCCTGTCC
GTTATATACATGGAATAAATAAAGGCCTTGTGGTGATTTATTAATCAGGG
CCTCCGATGTCCAATTAATGAGGTGCATTCTCGGAATAAAAAGGCTTCTA
TGTTTCTAAAAAAAAAGAGAGGGCGGGCGTCTCAAAGAATCCACTTAGTT
CCCGGCGTTGCAAGCTTACTCTGATATGTGGACCTAAATCAATAACGGCC
GGGG
back to top