EY650153
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.731e-41 Identity = 58/101 (57.43%), Postives = 76/101 (75.25%), Query Frame = 3 Query: 273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANPP 575 LS E LLK++ YL+RS W+PCLEF + G+++REH+ PG+Y GRYWTMWKLPM+GC T V+ EV EV+ EYP + RIIGFDNMR+ Q + +A+ PP Sbjct: 68 LSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKPP 167 HSP 2 Score: 58.151 bits (139), Expect = 2.731e-41 Identity = 28/57 (49.12%), Postives = 36/57 (63.16%), Query Frame = 2 Query: 98 ASMVAPFTGLKSSSAFPAANNTNNDITFIASNC*RGQCMNVWPPTGLNKFDTLSYLP 268 A+ VAPF GLKS++ P + +N SN R +CM VWP G+ KF+TLSYLP Sbjct: 10 ATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLP 66
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.026e-40 Identity = 56/101 (55.45%), Postives = 78/101 (77.23%), Query Frame = 3 Query: 270 TLSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANP 572 TL++E L+KE+ YLLR+ W+PCLEF+LE G + R+++ PG+Y GRYW MWKLPM+GCT+A+ V+NEV E YP +F+R+IGFDN+R+ QCI + P Sbjct: 71 TLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170 HSP 2 Score: 55.4546 bits (132), Expect = 1.026e-40 Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 2 Query: 74 ANRASLAHASMVAPFTGLKSSSAFPAANNTNNDITF----IASNC*RGQCMNVWPPTGLNKFDTLSYLP 268 A A A++V+ FTGLKS++ FP++ +N SN R +CM VWPP G KF+TLSYLP Sbjct: 2 ATGAGAGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLP 70
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 8.526e-40 Identity = 57/101 (56.44%), Postives = 74/101 (73.27%), Query Frame = 3 Query: 273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANPP 575 LS + LLK++ YLLR+GWIPCLEF + G+VYRE+ P +Y GRYWTMWKLPM+GC DAT V E+ E YP +F R+IGFDN+++ QC+ +A PP Sbjct: 68 LSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKPP 167 HSP 2 Score: 55.4546 bits (132), Expect = 8.526e-40 Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 2 Query: 98 ASMVAPFTGLKSSSAFPAANNTNNDITFIASNC*RGQCMNVWPPTGLNKFDTLSYLP 268 A+ VAPF GLKS+++ P A ++ + + SN R +CM VWP G KF+TLSYLP Sbjct: 11 ATAVAPFQGLKSTASLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLP 66
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 2.451e-39 Identity = 56/100 (56.00%), Postives = 75/100 (75.00%), Query Frame = 3 Query: 273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANP 572 L+ E L+KE+ YLL++ W+PCLEFE E G + R + N PG+Y GRYW MWKLPM+GCT+A+ VLNEV E YP++F+R+IGFDN+R+ QCI + P Sbjct: 88 LTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186 HSP 2 Score: 53.5286 bits (127), Expect = 2.451e-39 Identity = 29/76 (38.16%), Postives = 43/76 (56.58%), Query Frame = 2 Query: 53 SSTTVATANRASLAHASMVAPFTGLKSSSAFPAANNTNNDITF----IASNC*RGQCMNVWPPTGLNKFDTLSYLP 268 ++ A A + ++++V+ FTGLKS + FP++ +N SN R +CM VWPP KF+TLSYLP Sbjct: 11 TAAVAAVAAPSKTGNSNVVSAFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLP 86
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.214e-38 Identity = 60/100 (60.00%), Postives = 75/100 (75.00%), Query Frame = 3 Query: 273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANP 572 L+ + LLKE+ YLLR GW+PCLEFEL KG+VY EH+ P +Y GRYWTMWKLPM+G TD V+ EV EV YP +FVR+IGF+N+R+ QCI +A P Sbjct: 34 LTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133 HSP 2 Score: 45.0542 bits (105), Expect = 1.214e-38 Identity = 23/39 (58.97%), Postives = 25/39 (64.10%), Query Frame = 2 Query: 164 NNDITFIASNC*RGQCMNVWPPTGLNKFDTLSYLPNTVR 280 N DIT SN R +CM VWPP G KF+TLSYLP R Sbjct: 1 NTDIT---SNGERVKCMQVWPPIGKKKFETLSYLPPLTR 36
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 3.617e-35 Identity = 64/101 (63.37%), Postives = 83/101 (82.18%), Query Frame = 3 Query: 273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANPP 575 LS E+LLK++ YL+RS W+PCLEF + G+++REH+ PG+Y GRYWTMWKLPM+GCTDAT V+NEV EV+ EYP ++VRIIGFDNMR+ QC+ +A PP Sbjct: 6 LSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPP 105
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.639e-34 Identity = 53/100 (53.00%), Postives = 69/100 (69.00%), Query Frame = 3 Query: 273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANP 572 L+ E LLK++ YLLR+ W+PCLEF E G+VYRE+ P +Y GRYWTMWKLPM+GCTDA+ V E+ E YP I+GFDN+R+ Q + +A P Sbjct: 67 LTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIAYKP 164 HSP 2 Score: 54.299 bits (129), Expect = 1.639e-34 Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 2 Query: 98 ASMVAPFTGLKSSSAFPAANNTNNDITFIASNC*RGQCMNVWPPTGLNKFDTLSYLP 268 A+ APF GLKS+++ P A + + + SN R +CM VWP G KF+TLSYLP Sbjct: 10 ATAAAPFQGLKSTASLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLP 65
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 6.608e-29 Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = 3 Query: 273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANP 572 L+ E LL E++YLL GWIP LEFE++ G+VYREH PG+Y GRYWTMWKLPM+G TD V+NEV EV+ P +FVR IGF++ RE QCI +A P Sbjct: 21 LTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKP 120
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 9.559e-28 Identity = 49/101 (48.51%), Postives = 69/101 (68.32%), Query Frame = 3 Query: 273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEY-PHSFVRIIGFDNMREAQCIILLAANP 572 LS ++L K+I Y+++SGW PC+EF+++ G V RE PG+Y GRYWTMWKLPM+GCTD+ VL E+ E + Y ++R +GFDN R+ QC + P Sbjct: 79 LSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178 HSP 2 Score: 34.2686 bits (77), Expect = 9.559e-28 Identity = 22/72 (30.56%), Postives = 31/72 (43.06%), Query Frame = 2 Query: 53 SSTTVATANRASLAHASMVAPFTGLKSSSAFPAANNTNNDITFIASNC*RGQCMNVWPPTGLNKFDTLSYLP 268 +S V T AS A + + +++ + T +N R CM VW P KF+TLSYLP Sbjct: 6 ASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLP 77
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 4.432e-25 Identity = 49/77 (63.64%), Postives = 61/77 (79.22%), Query Frame = 3 Query: 345 ELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANPP 575 ELE G+VYREH + PG+Y GRYWTMWKLP++GCTD+ VL EV E + EYP++F+RIIGFDN R+ QCI +A PP Sbjct: 1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77 The following BLAST results are available for this feature:
BLAST of EY650153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 112
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Sequences
The
following sequences are available for this feature:
EST sequence >EY650153 ID=EY650153; Name=EY650153; organism=Citrus sinensis; type=EST; length=954bpback to top |