EY650146

Overview
NameEY650146
Unique NameEY650146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650146 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSI (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. indica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.714e-27
Identity = 64/123 (52.03%), Postives = 79/123 (64.23%), Query Frame = 1
Query:  244 RKKLRLSKEQSLLLEETFKEHSTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELXSL------KLSPQLYMNMNPPTTLTM---CPSCER 585
            RKKL+L+KEQS LLE++F+ H+                +PRQVEVWFQNRRARTKLKQTEVDCE+LKRCCE+LTEEN++L+ E+ EL  L          QLY+         M   CPSCE+
Sbjct:  114 RKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRLASAAAAAAGSQLYVQFPRAAAAAMVNVCPSCEK 236          
BLAST of EY650146 vs. ExPASy Swiss-Prot
Match: ATHBX_ARATH (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.362e-23
Identity = 62/114 (54.39%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  244 RKKLRLSKEQSLLLEETFKEHSTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELXSLKLSPQLYMNMNPPTTLTMCPSCER 585
            RKKLRL+KEQS LLEE+F ++ T                 RQVEVWFQNRRAR+KLK TE++CEYLKR   +L E+NRRLQ EV+EL +LK S          + LTMCP CER
Sbjct:   68 RKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELRALKPS--------STSALTMCPRCER 173          
BLAST of EY650146 vs. ExPASy Swiss-Prot
Match: HOX26_ORYSJ (Putative homeobox-leucine zipper protein HOX26 OS=Oryza sativa subsp. japonica GN=HOX26 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.193e-19
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 1
Query:  244 RKKLRLSKEQSLLLEETFKEHSTXXXXXXXXXXXXXXXRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELXSLKLSPQLYMNMNPPTTLTMCPSC 579
            RKKLRL+ EQ+ LLE++F+ H+                  RQVEVWFQNRRARTKLKQTE DC+ L+R C++L  +N RL++++ EL     SP   ++     T  +CPSC
Sbjct:  116 RKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQTEADCDLLRRWCDHLAADNARLRRDLAELRRSSSSPP--VSGLAVATPVVCPSC 225          
The following BLAST results are available for this feature:
BLAST of EY650146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
HOX18_ORYSI7.714e-2752.03Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]
ATHBX_ARATH1.362e-2354.39Homeobox-leucine zipper protein ATHB-X OS=Arabidop... [more]
HOX26_ORYSJ1.193e-1945.54Putative homeobox-leucine zipper protein HOX26 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-G07-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650146 ID=EY650146; Name=EY650146; organism=Citrus sinensis; type=EST; length=926bp
TAATTATGCTTTACAGATCGAAACTCAGGATGCGGATCATTCCTTAGAGG
AATAGATGTGAATCAGGCACCAACAGTGGCAGATTGCGAGGAAGAAAATG
GGGTTTCATCACCAAACAGCACTGTTTCTAGCATAAGTGGAAAGAGGAGT
GAGAGAGAGCCCATTGGAGATGAGACTGAGGCTGAAAGAGCGTCTTGCTC
TCGCGGCAGTGACGACGAAGACGGTGGCGCTGGTGATGCATCAAGAAAGA
AGCTGAGATTGTCGAAAGAACAGTCTTTGTTGCTTGAAGAGACCTTCAAA
GAGCATAGCACTCTCAATCCTAAGCAAAAGTTGGCTTTGGCAAAGCAGTT
GAATCTTAGGCCTAGACAAGTAGAAGTGTGGTTTCAGAACAGAAGGGCAA
GGACAAAGTTGAAGCAAACAGAGGTTGATTGTGAGTACTTAAAGAGATGC
TGCGAGAATCTAACGGAGGAGAACAGGAGATTGCAGAAGGAAGTGCAAGA
GCTTANATCATTGAAGCTTTCTCCTCAACTCTACATGAATATGAATCCTC
CCACGACACTCACAATGTGTCCCTCCTGTGAGCGTGTGGCTGTATCATCG
TCGTCGTCGTCATCCTCTGCTGCTGCCAACGGCACCACCCGTCTNCCCAT
TGGTCCTAACCATCAACGACTGACTCCAGTGAGCCCTTGGGCAGCATTAC
CAATCCACCNACCGTCGTATTATCAGCTTGGAATAAGGGCATTGTNCGTA
AAGAAGTAATTNGNNTATTANAAAGAGAGTANTAGGTTNGATNNTTGTTG
TATTATAACTGAAGGCTNCTGGGGTATACTGAGGATGCTCGTGTGACTAN
TGGNATTANGGGATATGGGNAGGACACCCTCTGTGGTCAATGAGCTANCA
TGAACATTTTGGGATCAGAAATGATT
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