EY650141 | Citrus Genome Database

Overview


Name	EY650141
Unique Name	EY650141
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	878

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY650141 vs. ExPASy Swiss-Prot
Match: GCSP_SHIBS (Glycine dehydrogenase [decarboxylating] OS=Shigella boydii serotype 4 (strain Sb227) GN=gcvP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.382e-31
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 3

Query:  198 QTIDICITRADGFDIKGGVSDL-KDIDYKSCDVCGVLVHYPGTEGEVLDYGDFIKNAHANGVNGCMATDLLALTIVNPPGELGADIGWGSAHRCGVPRGYGGAHAAFVGTAQEYRRRIAWRMGGGNVDSSG 587
            QT+D+  TRA+ F  +  V D  K +D++  DV GVL+   GT GE+ DY   I    +  +   +A D++AL ++  PG+ GADI +GSA R GVP GYGG HAAF     EY+R +  R+ G + D++G
Sbjct:  182 QTLDVVRTRAETFGFEVIVDDAQKVLDHQ--DVFGVLLQQVGTTGEIHDYTALISELKSRKIVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEYKRSMPGRIIGVSKDAAG 310

HSP 2 Score: 60.077 bits (144), Expect = 2.382e-31
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1

Query:   13 AQGRLGGGGNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKK-NTFIIASN 186
            +QGRL    NFQ +  DLTGL M++ASLLDE TAAAEAMAM   + K K  N F +AS+
Sbjct:  120 SQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAMAKRVSKLKNANRFFVASD 178

BLAST of EY650141 vs. ExPASy Swiss-Prot
Match: GCSP_SHIB3 (Glycine dehydrogenase [decarboxylating] OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=gcvP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.382e-31
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 3

Query:  198 QTIDICITRADGFDIKGGVSDL-KDIDYKSCDVCGVLVHYPGTEGEVLDYGDFIKNAHANGVNGCMATDLLALTIVNPPGELGADIGWGSAHRCGVPRGYGGAHAAFVGTAQEYRRRIAWRMGGGNVDSSG 587
            QT+D+  TRA+ F  +  V D  K +D++  DV GVL+   GT GE+ DY   I    +  +   +A D++AL ++  PG+ GADI +GSA R GVP GYGG HAAF     EY+R +  R+ G + D++G
Sbjct:  182 QTLDVVRTRAETFGFEVIVDDAQKVLDHQ--DVFGVLLQQVGTTGEIHDYTALISELKSRKIVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEYKRSMPGRIIGVSKDAAG 310

HSP 2 Score: 60.077 bits (144), Expect = 2.382e-31
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1

Query:   13 AQGRLGGGGNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGK-KNTFIIASN 186
            +QGRL    NFQ +  DLTGL M++ASLLDE TAAAEAMAM   + K K  N F +AS+
Sbjct:  120 SQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAMAKRVSKLKNSNRFFVASD 178

BLAST of EY650141 vs. ExPASy Swiss-Prot
Match: GCSP_ESCF3 (Glycine dehydrogenase [decarboxylating] OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gcvP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.382e-31
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 3

Query:  198 QTIDICITRADGFDIKGGVSDL-KDIDYKSCDVCGVLVHYPGTEGEVLDYGDFIKNAHANGVNGCMATDLLALTIVNPPGELGADIGWGSAHRCGVPRGYGGAHAAFVGTAQEYRRRIAWRMGGGNVDSSG 587
            QT+D+  TRA+ F  +  V D  K +D++  DV GVL+   GT GE+ DY   I    +  +   +A D++AL ++  PG+ GADI +GSA R GVP GYGG HAAF     EY+R +  R+ G + D++G
Sbjct:  182 QTLDVVRTRAETFGFEVIVDDAQKVLDHQ--DVFGVLLQQVGTTGEIHDYTALISELKSRKIVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEYKRSMPGRIIGVSKDAAG 310

HSP 2 Score: 60.077 bits (144), Expect = 2.382e-31
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1

Query:   13 AQGRLGGGGNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKK-NTFIIASN 186
            +QGRL    NFQ +  DLTGL M++ASLLDE TAAAEAMAM   + K K  N F +AS+
Sbjct:  120 SQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAMAKRVSKLKNANRFFVASD 178

BLAST of EY650141 vs. ExPASy Swiss-Prot
Match: GCSP_ECOUT (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli (strain UTI89 / UPEC) GN=gcvP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.382e-31
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 3

Query:  198 QTIDICITRADGFDIKGGVSDL-KDIDYKSCDVCGVLVHYPGTEGEVLDYGDFIKNAHANGVNGCMATDLLALTIVNPPGELGADIGWGSAHRCGVPRGYGGAHAAFVGTAQEYRRRIAWRMGGGNVDSSG 587
            QT+D+  TRA+ F  +  V D  K +D++  DV GVL+   GT GE+ DY   I    +  +   +A D++AL ++  PG+ GADI +GSA R GVP GYGG HAAF     EY+R +  R+ G + D++G
Sbjct:  182 QTLDVVRTRAETFGFEVIVDDAQKVLDHQ--DVFGVLLQQVGTTGEIHDYTALISELKSRKIVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEYKRSMPGRIIGVSKDAAG 310

HSP 2 Score: 60.077 bits (144), Expect = 2.382e-31
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1

Query:   13 AQGRLGGGGNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKK-NTFIIASN 186
            +QGRL    NFQ +  DLTGL M++ASLLDE TAAAEAMAM   + K K  N F +AS+
Sbjct:  120 SQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAMAKRVSKLKNANRFFVASD 178

BLAST of EY650141 vs. ExPASy Swiss-Prot
Match: GCSP_ECOSM (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=gcvP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.382e-31
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 3

Query:  198 QTIDICITRADGFDIKGGVSDL-KDIDYKSCDVCGVLVHYPGTEGEVLDYGDFIKNAHANGVNGCMATDLLALTIVNPPGELGADIGWGSAHRCGVPRGYGGAHAAFVGTAQEYRRRIAWRMGGGNVDSSG 587
            QT+D+  TRA+ F  +  V D  K +D++  DV GVL+   GT GE+ DY   I    +  +   +A D++AL ++  PG+ GADI +GSA R GVP GYGG HAAF     EY+R +  R+ G + D++G
Sbjct:  182 QTLDVVRTRAETFGFEVIVDDAQKVLDHQ--DVFGVLLQQVGTTGEIHDYTALISELKSRKIVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEYKRSMPGRIIGVSKDAAG 310

HSP 2 Score: 60.077 bits (144), Expect = 2.382e-31
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1

Query:   13 AQGRLGGGGNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKK-NTFIIASN 186
            +QGRL    NFQ +  DLTGL M++ASLLDE TAAAEAMAM   + K K  N F +AS+
Sbjct:  120 SQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAMAKRVSKLKNANRFFVASD 178

BLAST of EY650141 vs. ExPASy Swiss-Prot
Match: GCSP_ECOSE (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli (strain SE11) GN=gcvP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.382e-31
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 3

Query:  198 QTIDICITRADGFDIKGGVSDL-KDIDYKSCDVCGVLVHYPGTEGEVLDYGDFIKNAHANGVNGCMATDLLALTIVNPPGELGADIGWGSAHRCGVPRGYGGAHAAFVGTAQEYRRRIAWRMGGGNVDSSG 587
            QT+D+  TRA+ F  +  V D  K +D++  DV GVL+   GT GE+ DY   I    +  +   +A D++AL ++  PG+ GADI +GSA R GVP GYGG HAAF     EY+R +  R+ G + D++G
Sbjct:  182 QTLDVVRTRAETFGFEVIVDDAQKVLDHQ--DVFGVLLQQVGTTGEIHDYTALISELKSRKIVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEYKRSMPGRIIGVSKDAAG 310

HSP 2 Score: 60.077 bits (144), Expect = 2.382e-31
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1

Query:   13 AQGRLGGGGNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKK-NTFIIASN 186
            +QGRL    NFQ +  DLTGL M++ASLLDE TAAAEAMAM   + K K  N F +AS+
Sbjct:  120 SQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAMAKRVSKLKNANRFFVASD 178

BLAST of EY650141 vs. ExPASy Swiss-Prot
Match: GCSP_ECOLU (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=gcvP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.382e-31
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 3

Query:  198 QTIDICITRADGFDIKGGVSDL-KDIDYKSCDVCGVLVHYPGTEGEVLDYGDFIKNAHANGVNGCMATDLLALTIVNPPGELGADIGWGSAHRCGVPRGYGGAHAAFVGTAQEYRRRIAWRMGGGNVDSSG 587
            QT+D+  TRA+ F  +  V D  K +D++  DV GVL+   GT GE+ DY   I    +  +   +A D++AL ++  PG+ GADI +GSA R GVP GYGG HAAF     EY+R +  R+ G + D++G
Sbjct:  182 QTLDVVRTRAETFGFEVIVDDAQKVLDHQ--DVFGVLLQQVGTTGEIHDYTALISELKSRKIVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEYKRSMPGRIIGVSKDAAG 310

HSP 2 Score: 60.077 bits (144), Expect = 2.382e-31
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1

Query:   13 AQGRLGGGGNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKK-NTFIIASN 186
            +QGRL    NFQ +  DLTGL M++ASLLDE TAAAEAMAM   + K K  N F +AS+
Sbjct:  120 SQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAMAKRVSKLKNANRFFVASD 178

BLAST of EY650141 vs. ExPASy Swiss-Prot
Match: GCSP_ECOLI (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli (strain K12) GN=gcvP PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 2.382e-31
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 3

Query:  198 QTIDICITRADGFDIKGGVSDL-KDIDYKSCDVCGVLVHYPGTEGEVLDYGDFIKNAHANGVNGCMATDLLALTIVNPPGELGADIGWGSAHRCGVPRGYGGAHAAFVGTAQEYRRRIAWRMGGGNVDSSG 587
            QT+D+  TRA+ F  +  V D  K +D++  DV GVL+   GT GE+ DY   I    +  +   +A D++AL ++  PG+ GADI +GSA R GVP GYGG HAAF     EY+R +  R+ G + D++G
Sbjct:  182 QTLDVVRTRAETFGFEVIVDDAQKVLDHQ--DVFGVLLQQVGTTGEIHDYTALISELKSRKIVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEYKRSMPGRIIGVSKDAAG 310

HSP 2 Score: 60.077 bits (144), Expect = 2.382e-31
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1

Query:   13 AQGRLGGGGNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKK-NTFIIASN 186
            +QGRL    NFQ +  DLTGL M++ASLLDE TAAAEAMAM   + K K  N F +AS+
Sbjct:  120 SQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAMAKRVSKLKNANRFFVASD 178

BLAST of EY650141 vs. ExPASy Swiss-Prot
Match: GCSP_ECOLC (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=gcvP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.382e-31
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 3

Query:  198 QTIDICITRADGFDIKGGVSDL-KDIDYKSCDVCGVLVHYPGTEGEVLDYGDFIKNAHANGVNGCMATDLLALTIVNPPGELGADIGWGSAHRCGVPRGYGGAHAAFVGTAQEYRRRIAWRMGGGNVDSSG 587
            QT+D+  TRA+ F  +  V D  K +D++  DV GVL+   GT GE+ DY   I    +  +   +A D++AL ++  PG+ GADI +GSA R GVP GYGG HAAF     EY+R +  R+ G + D++G
Sbjct:  182 QTLDVVRTRAETFGFEVIVDDAQKVLDHQ--DVFGVLLQQVGTTGEIHDYTALISELKSRKIVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEYKRSMPGRIIGVSKDAAG 310

HSP 2 Score: 60.077 bits (144), Expect = 2.382e-31
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1

Query:   13 AQGRLGGGGNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKK-NTFIIASN 186
            +QGRL    NFQ +  DLTGL M++ASLLDE TAAAEAMAM   + K K  N F +AS+
Sbjct:  120 SQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAMAKRVSKLKNANRFFVASD 178

BLAST of EY650141 vs. ExPASy Swiss-Prot
Match: GCSP_ECOL6 (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O6 GN=gcvP PE=3 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 2.382e-31
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 3

Query:  198 QTIDICITRADGFDIKGGVSDL-KDIDYKSCDVCGVLVHYPGTEGEVLDYGDFIKNAHANGVNGCMATDLLALTIVNPPGELGADIGWGSAHRCGVPRGYGGAHAAFVGTAQEYRRRIAWRMGGGNVDSSG 587
            QT+D+  TRA+ F  +  V D  K +D++  DV GVL+   GT GE+ DY   I    +  +   +A D++AL ++  PG+ GADI +GSA R GVP GYGG HAAF     EY+R +  R+ G + D++G
Sbjct:  182 QTLDVVRTRAETFGFEVIVDDAQKVLDHQ--DVFGVLLQQVGTTGEIHDYTALISELKSRKIVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEYKRSMPGRIIGVSKDAAG 310

HSP 2 Score: 60.077 bits (144), Expect = 2.382e-31
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1

Query:   13 AQGRLGGGGNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKK-NTFIIASN 186
            +QGRL    NFQ +  DLTGL M++ASLLDE TAAAEAMAM   + K K  N F +AS+
Sbjct:  120 SQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAMAKRVSKLKNANRFFVASD 178

The following BLAST results are available for this feature:

BLAST of EY650141 vs. ExPASy Swiss-Prot

BLAST of EY650141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 343


Match Name	E-value	Identity	Description
GCSP_SHIBS	2.382e-31	41.98	Glycine dehydrogenase [decarboxylating] OS=Shigell...	[more]
GCSP_SHIB3	2.382e-31	41.98	Glycine dehydrogenase [decarboxylating] OS=Shigell...	[more]
GCSP_ESCF3	2.382e-31	41.98	Glycine dehydrogenase [decarboxylating] OS=Escheri...	[more]
GCSP_ECOUT	2.382e-31	41.98	Glycine dehydrogenase [decarboxylating] OS=Escheri...	[more]
GCSP_ECOSM	2.382e-31	41.98	Glycine dehydrogenase [decarboxylating] OS=Escheri...	[more]
GCSP_ECOSE	2.382e-31	41.98	Glycine dehydrogenase [decarboxylating] OS=Escheri...	[more]
GCSP_ECOLU	2.382e-31	41.98	Glycine dehydrogenase [decarboxylating] OS=Escheri...	[more]
GCSP_ECOLI	2.382e-31	41.98	Glycine dehydrogenase [decarboxylating] OS=Escheri...	[more]
GCSP_ECOLC	2.382e-31	41.98	Glycine dehydrogenase [decarboxylating] OS=Escheri...	[more]
GCSP_ECOL6	2.382e-31	41.98	Glycine dehydrogenase [decarboxylating] OS=Escheri...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-100-007-G02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY650141 ID=EY650141; Name=EY650141; organism=Citrus sinensis; type=EST; length=878bp
CCCACGCGTCCGGCTCAAGGGAGACTGGGGGGGGGGGGGAATTTCCAAAC
CATGATTGCAGATCTTACTGGATTGCCTATGTCAAACGCCTCATTGCTTG
ATGAGGGAACTGCTGCTGCTGAGGCAATGGCTATGTGCAATAACATACAG
AAGGGAAAGAAGAACACTTTTATTATTGCTAGCAACTGGGGGGGCGGCAG
ACAATTGATATTTGTATTACTAGAGCTGATGGTTTTGATATTAAAGGTGG
TGTTTCGGATCTTAAGGATATTGATTACAAGTCATGTGATGTTTGTGGGG
TTTTGGTTCACTATCCAGGTACTGAGGGTGAAGTTTTGGATTATGGGGAT
TTCATTAAGAATGCTCATGCTAATGGGGTTAATGGGTGTATGGCAACGGA
TTTGTTGGCATTGACAATTGTGAATCCTCCAGGTGAACTGGGGGCTGATA
TTGGGTGGGGCTCTGCTCATAGGTGTGGTGTGCCAAGGGGGTATGGAGGT
GCTCATGCAGCATTTGTGGGTACCGCTCAAGAGTACAGAAGGAGGATCGC
ATGGAGGATGGGGGGGGGTAACGTGGATTCGTCAGGGAAACCACGCCGGG
GGTGGGGGAATTGCAAACAAGGAGGAAGCTTTCCCGGAGGGGCGCGGGCG
ACCCGCGACCTCTGGCGCCGGGGAGGGCGTACTGGCGAGCGGGGCGGGCG
TGGGTGGCGGGTTATGACCGGGGCCGGAGGGGCGTAAAGCCAGTCTTCAG
AGAGGGGACGTGGTTTATCGGTACTTTCGCCCCTGGGGGAAAAAACGTGG
TGAGCGAGGAACGGCGGGGCGTGTACGTCATTAGACTGTGGAAGGGGGGG
GGGGCGGAGGGGGAGCCAGTGGAGGGGC