EY650120

Overview
NameEY650120
Unique NameEY650120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_PSEPF (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.923e-13
Identity = 49/124 (39.52%), Postives = 66/124 (53.23%), Query Frame = 3
Query:  537 EYHSRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHTTLIK-SDWEKGXMRTMMQH--MASLITKGLKWIDXFGPGQS 896
            E   +RP TPLLD  N P  +R L   EL+ LADELR ++++ V +TGGH G+ LGVIELT+A   +     DR+  DV H     K     +  M T+ Q   +A+   +     D FG G S
Sbjct:    7 EIPRKRPTTPLLDRANTPDGLRRLGEAELETLADELRLELLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRLVWDVGHQAYPHKILTGRRERMETLRQKDGIAAFPRRSESEYDTFGVGHS 130          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_PSEFS (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain SBW25) GN=dxs PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.923e-13
Identity = 48/125 (38.40%), Postives = 66/125 (52.80%), Query Frame = 3
Query:  537 EYHSRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH----HTTLIKSDWEKGXMRTMMQHMASLITKGLKWIDXFGPGQS 896
            E   +RP TPLLD    P+ +R L   EL+ LADELR ++++ V +TGGH G+ LGVIELT+A   +     DR+  DV H    H  L     + G +R     +A+   +     D FG G S
Sbjct:    7 EIPRKRPSTPLLDRAVTPVGLRRLGEAELETLADELRLELLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRLVWDVGHQAYPHKILTGRREQMGTLR-QKDGIAAFPRRAESEYDTFGVGHS 130          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_RHIEC (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dxs PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.035e-12
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  555 PPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            P TPLLD + YP  +R L  R+L QLA E+R ++I  VS+TGGHLG+ LGV+ELT+A   +     DR+  DV H
Sbjct:    5 PKTPLLDQVTYPADLRKLEDRDLPQLAREVRDEMIDAVSRTGGHLGAGLGVVELTIAIHSVFDTPNDRLIFDVGH 79          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_POLSJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=dxs PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.035e-12
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  564 PLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT 782
            PLL+TIN P  +R L   +LK LADELR+ V+ +VSKTGGHL S LG +ELTVA   + +  +DR+  DV H T
Sbjct:    3 PLLETINSPADLRRLPRAQLKALADELRAFVLDSVSKTGGHLSSNLGTVELTVALHYVFNTPEDRLVWDVGHQT 76          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_RHILW (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.351e-12
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  555 PPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            P TPLLD + YP  +R L  R+L QLA E+R ++I  VS+TGGHLG+ LGV+ELT+A   +     DR+  DV H
Sbjct:    5 PKTPLLDQVTYPADLRKLEDRDLPQLAREVRDEMIDAVSRTGGHLGAGLGVVELTIAIHSVFDTPDDRLIFDVGH 79          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_CHRSD (1-deoxy-D-xylulose-5-phosphate synthase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.351e-12
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 3
Query:  537 EYHSRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            E  + RP TPLLDT  +P  + + +  +L+QLADELR+ ++++V  TGGH G+ LGV+ELTVA   +L    DR+  DV H
Sbjct:    6 EIPAERPATPLLDTCEHPAALHDFNATQLRQLADELRAYLLYSVGCTGGHFGAGLGVVELTVALHHILDTPYDRLVWDVGH 86          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_BARBK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.351e-12
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  552 RPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHTTLIK-SDWEKGXMRTMMQH--MASLITKGLKWIDXFGPGQS 896
            RP TPLLD +  P+ +R L   +L +LADELR+++I  VS TGGHLG+ LGV+ELT+A   + +   DRI  DV H     K     +  +RT+ Q   ++    +     D FG G S
Sbjct:    3 RPLTPLLDCVLSPLDLRALPASDLARLADELRAEMIDVVSVTGGHLGAGLGVVELTIALHYIFNTPDDRIIWDVGHQAYPHKILTGRRDKIRTLRQEGGLSGFTKRSESIYDPFGAGHS 121          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_AGRRK (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.351e-12
Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 3
Query:  555 PPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            P TPLLD ++YP  +R L  R+L QLA E+R ++I  VS+TGGHLG+ LGV+ELT+A   +     DR+  DV H
Sbjct:    5 PETPLLDQVHYPSDLRKLEDRDLPQLAREVRDEMIDAVSRTGGHLGAGLGVVELTIAIHNVFDTPNDRLIFDVGH 79          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_MAGSA (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.765e-12
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  552 RPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHTTLIK-SDWEKGXMRTMMQ--HMASLITKGLKWIDXFGPGQS 896
            +P + LLD ++ P  +R+ SI EL+QL  E+R ++I +VS TGGHLG+ LGV ELTVA   +    +DR+  DV H     K     +G MRTM Q   ++    +     D FG G S
Sbjct:    9 KPSSSLLDRVSSPADIRDFSIEELEQLTYEVRQEMIQSVSFTGGHLGAGLGVAELTVALHHIFDTPRDRLIWDVGHQAYPHKILTGRRGRMRTMRQGGGLSGFTRRSESEYDPFGAGHS 127          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_RHOCS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 3
Query:  561 TPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            TPLLDT+N P  +R L   +L+Q ADELR++ I  VS TGGHLG+ LGV+ELTVA   + +   DR+  DV H
Sbjct:    7 TPLLDTVNTPEDLRKLDPSQLRQFADELRTETINAVSVTGGHLGAGLGVVELTVALHYVFNTPADRLIWDVGH 79          
The following BLAST results are available for this feature:
BLAST of EY650120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
DXS_PSEPF7.923e-1339.521-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEFS7.923e-1338.401-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_RHIEC1.035e-1250.671-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_POLSJ1.035e-1254.051-deoxy-D-xylulose-5-phosphate synthase OS=Polarom... [more]
DXS_RHILW1.351e-1250.671-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_CHRSD1.351e-1246.911-deoxy-D-xylulose-5-phosphate synthase OS=Chromoh... [more]
DXS_BARBK1.351e-1240.341-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_AGRRK1.351e-1250.671-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS_MAGSA1.765e-1240.341-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]
DXS_RHOCS2.305e-1253.421-deoxy-D-xylulose-5-phosphate synthase OS=Rhodosp... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-D11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650120 ID=EY650120; Name=EY650120; organism=Citrus sinensis; type=EST; length=897bp
CGATCAATCACAATCTACAAATTTGGGGGGTGGGGTGTAGAGCTTCATGC
CTTTAACAGACCCACTAAATTTGCCTTAAGCATTATCAACCACAAACACG
CGTTCGGATTACTTCCTTCATTCGTTTATTATATTTTTTTAATATATTCA
ATATTTATATTCAACCTACTTCACTTCAGTGGCATCCAGCACGCAGGAAG
CACTGAATACATTCACTGTGAGAAGATGACTGACCAGTCGCGAGTGTCTT
TAATTATATACTGATTTGCCGGAGTTAGCATATTATTCTTCACTCACTGC
GTGATGTTTTCTTTTCTGGGGTGTTCTATGCAATACCTGGTATGGCTCTC
TCCGCATTCTCATTCCCGACTTATGTCAGCAAAGCAACAGATTCGGGTCC
CCACAAATCTTCTCCTGTTACTTCTCATTTCTTTGGAGCAGCTCTTTTTT
CCCATTTGTCACACAAGCTCGACAATCATCAGATACAGCTCAAGAAAAGG
CCAAATGGGGTTTGTGCATCACTTTCAGAAAGAGGAGAGTATCACTCACG
AAGACCACCGACACCTCTCTTGGACACCATAAACTATCCAATTCACATGA
GAAATCTATCCATCAGGGAGCTGAAACAACTGGCAGATGAGTTGCGGTCC
GATGTCATATTCAATGTTTCNAAAACCGGGGGTCACTTGGGCTCAACTCT
TGGTGTGATTGAGCTTACCGTGGCCTTCATTATGTTGTCATGCTCCAAAG
ACCGGATCTGNGAGGATGTCNGTCATCACACTACCCTCATAAAATCTGAC
TGGGAGAAGGGATANATGCGTACCATGATGCAACATATGGCCTCTCTGAT
CACTAAAGGGCTGAAATGGATTGATNGCTTTGGACCGGGCCAGTCTA
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