EY650120

Overview
NameEY650120
Unique NameEY650120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_PSEPK (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain KT2440) GN=dxs PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.760e-12
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  537 EYHSRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            E    RP TPLLD  + P  +R L+  +L+ LADELR ++++ V +TGGH G+ LGVIELT+A   +     DR+  DV H
Sbjct:    7 EIPRERPVTPLLDRADTPAGLRRLAEADLETLADELRQELLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRLVWDVGH 87          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_PSEPG (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain GB-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.760e-12
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  537 EYHSRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            E    RP TPLLD  + P  +R L+  +L+ LADELR ++++ V +TGGH G+ LGVIELT+A   +     DR+  DV H
Sbjct:    7 EIPRERPVTPLLDRADTPAGLRRLAEADLETLADELRQELLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRLVWDVGH 87          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_PSEP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.760e-12
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  537 EYHSRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            E    RP TPLLD  + P  +R L+  +L+ LADELR ++++ V +TGGH G+ LGVIELT+A   +     DR+  DV H
Sbjct:    7 EIPRERPVTPLLDRADTPAGLRRLAEADLETLADELRQELLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRLVWDVGH 87          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_BEII9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.760e-12
Identity = 40/73 (54.79%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  561 TPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            TPLLDTI  P  +R L   +L QLADELR++ I  VS TGGHLG+ LGV+ELTVA   +     DR+  DV H
Sbjct:    7 TPLLDTIATPTDLRRLKESDLAQLADELRTETIDAVSVTGGHLGAGLGVVELTVALHYVFDTPHDRLIWDVGH 79          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_LEPCP (1-deoxy-D-xylulose-5-phosphate synthase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.144e-11
Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  564 PLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT 782
            PLL  I  P  +R LS  ELKQLADELR  V+ +VS+TGGHL S LG +ELTVA   +    +DR+  DV H T
Sbjct:    5 PLLPRIQSPADVRRLSRAELKQLADELREFVLQSVSRTGGHLSSNLGTVELTVALHHVFDTPEDRLVWDVGHQT 78          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_BRAJA (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium japonicum GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.144e-11
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  561 TPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            TPLLDTI  P  +R L I +++Q+ADELR + I  VS TGGH G+ LGV+ELT A   +    +DR+  DV H
Sbjct:   26 TPLLDTIRTPDDLRKLKIEQVRQVADELRQETIDAVSVTGGHFGAGLGVVELTTAIHYVFDTPRDRLIWDVGH 98          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_SILPO (1-deoxy-D-xylulose-5-phosphate synthase OS=Silicibacter pomeroyi GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.494e-11
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  546 SRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            S RP TPLLD +  P  ++  S  +L QLA ELR++ +  VS TGGHLG+ LGV+ELTVA   +    +D++  DV H
Sbjct:    2 SDRPHTPLLDQVTRPADLKRFSDAQLTQLAGELRAETVSAVSVTGGHLGAGLGVVELTVALHAVFDTPRDKVIWDVGH 79          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_RHOPB (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.494e-11
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  561 TPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            TPLLDTI  P  +R L I +++Q+ADELR + I  VS TGGH G+ LGV+ELT A   +    +DR+  DV H
Sbjct:    7 TPLLDTIRTPADLRKLRIDQVRQVADELRQETIEAVSVTGGHFGAGLGVVELTTAIHYVFDTPRDRLIWDVGH 79          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_RHILO (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium loti GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.494e-11
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  555 PPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            P TPLLD +  P  +R L   EL QLA ELR +++  VS+TGGHLG+ LGV+ELTVA   + +   DR+  DV H
Sbjct:    5 PHTPLLDKVRIPADLRALDESELPQLASELRLELVDAVSRTGGHLGAGLGVVELTVALHYVFNTPDDRLIWDVGH 79          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_NITWN (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.494e-11
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  561 TPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            TPLLDTI  P  +R L + +++Q+ADELR + I  VS TGGH G+ LGV+ELT A   +    +DR+  DV H
Sbjct:   31 TPLLDTIRTPADLRKLKVEQVRQVADELRLETIDAVSVTGGHFGAGLGVVELTTAIHYIFDTPRDRLIWDVGH 103          
The following BLAST results are available for this feature:
BLAST of EY650120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
DXS_PSEPK8.760e-1245.681-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEPG8.760e-1245.681-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEP18.760e-1245.681-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_BEII98.760e-1254.791-deoxy-D-xylulose-5-phosphate synthase OS=Beijeri... [more]
DXS_LEPCP1.144e-1154.051-deoxy-D-xylulose-5-phosphate synthase OS=Leptoth... [more]
DXS_BRAJA1.144e-1150.681-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]
DXS_SILPO1.494e-1147.441-deoxy-D-xylulose-5-phosphate synthase OS=Silicib... [more]
DXS_RHOPB1.494e-1150.681-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHILO1.494e-1150.671-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_NITWN1.494e-1149.321-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-D11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650120 ID=EY650120; Name=EY650120; organism=Citrus sinensis; type=EST; length=897bp
CGATCAATCACAATCTACAAATTTGGGGGGTGGGGTGTAGAGCTTCATGC
CTTTAACAGACCCACTAAATTTGCCTTAAGCATTATCAACCACAAACACG
CGTTCGGATTACTTCCTTCATTCGTTTATTATATTTTTTTAATATATTCA
ATATTTATATTCAACCTACTTCACTTCAGTGGCATCCAGCACGCAGGAAG
CACTGAATACATTCACTGTGAGAAGATGACTGACCAGTCGCGAGTGTCTT
TAATTATATACTGATTTGCCGGAGTTAGCATATTATTCTTCACTCACTGC
GTGATGTTTTCTTTTCTGGGGTGTTCTATGCAATACCTGGTATGGCTCTC
TCCGCATTCTCATTCCCGACTTATGTCAGCAAAGCAACAGATTCGGGTCC
CCACAAATCTTCTCCTGTTACTTCTCATTTCTTTGGAGCAGCTCTTTTTT
CCCATTTGTCACACAAGCTCGACAATCATCAGATACAGCTCAAGAAAAGG
CCAAATGGGGTTTGTGCATCACTTTCAGAAAGAGGAGAGTATCACTCACG
AAGACCACCGACACCTCTCTTGGACACCATAAACTATCCAATTCACATGA
GAAATCTATCCATCAGGGAGCTGAAACAACTGGCAGATGAGTTGCGGTCC
GATGTCATATTCAATGTTTCNAAAACCGGGGGTCACTTGGGCTCAACTCT
TGGTGTGATTGAGCTTACCGTGGCCTTCATTATGTTGTCATGCTCCAAAG
ACCGGATCTGNGAGGATGTCNGTCATCACACTACCCTCATAAAATCTGAC
TGGGAGAAGGGATANATGCGTACCATGATGCAACATATGGCCTCTCTGAT
CACTAAAGGGCTGAAATGGATTGATNGCTTTGGACCGGGCCAGTCTA
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