EY649938

Overview
NameEY649938
Unique NameEY649938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 6.190e-77
Identity = 134/147 (91.16%), Postives = 140/147 (95.24%), Query Frame = 3
Query:  237 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIGFG**PXSF 677
            PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH  WAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP+YPGGSFDP+G    P +F
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAF 147          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 3.717e-73
Identity = 134/185 (72.43%), Postives = 144/185 (77.84%), Query Frame = 3
Query:   99 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIG 653
            + K   L P  + L      +M K  +KS  S S      RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW  +V+LMGAVEGYRIA GPLGEVTDPLYP GSFD +G
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLG 201          

HSP 2 Score: 41.2022 bits (95), Expect = 3.717e-73
Identity = 23/51 (45.10%), Postives = 27/51 (52.94%), Query Frame = 1
Query:  649 LGLADDPXAFAELKGKENQNGRWXYVSMVWFLXSGHCHRQGTVRETGRHLG 801
            LGLA+D  AFAELK KE +NGR    SM  F       R+  +     HLG
Sbjct:  200 LGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLG 250          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.607e-67
Identity = 123/175 (70.29%), Postives = 143/175 (81.71%), Query Frame = 3
Query:  165 RKTGSKSV---SSGSPWYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIGFG**PXSF 677
            +KT +K+    SSG  +YGP+R K+LGP+S    P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQ+I+A  A QV+LMG +EGYR+ GGP GE  DPLYPG SFDP+G    P +F
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTF 194          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.764e-66
Identity = 121/164 (73.78%), Postives = 135/164 (82.32%), Query Frame = 3
Query:  189 SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIGFG**PXSF 677
            S+G  WYGPDR K+LGPFS   P+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+   GVKFGE VWFKAGAQIFSEGGLDYLG+P+LIHAQ+I+A  A QVVLMG +EGYR+ GGP GE  DPLYPG SFDP+G    P +F
Sbjct:   34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTF 197          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.637e-61
Identity = 124/197 (62.94%), Postives = 144/197 (73.10%), Query Frame = 3
Query:   96 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPIGFG**PXSF 677
            F+G+  N  P  + ++ G         ++   S   WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDP+G    P +F
Sbjct:   19 FLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTF 206          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 2.138e-61
Identity = 125/196 (63.78%), Postives = 145/196 (73.98%), Query Frame = 3
Query:  102 GKAVNLAPSGN-ELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGS-FDPIGFG**PXSF 677
            G+A + +P  +   +  GRI+M             WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QV+LMG VEG+RI G   +GE  D LYPGG  FDP+G    P +F
Sbjct:   24 GRAASASPLRDIAAATNGRITM---------GNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTF 209          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.704e-56
Identity = 109/162 (67.28%), Postives = 128/162 (79.01%), Query Frame = 3
Query:  204 WYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG--EVTDPLYPGGSFDPIGFG**PXSF 677
            +YGPDR K+LGPFS  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI+A  A QVVLMG  E YR  GG  G  +  D LYPGG FDP+G    P +F
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTF 194          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.256e-53
Identity = 109/172 (63.37%), Postives = 127/172 (73.84%), Query Frame = 3
Query:  168 KTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIGFG**PXSF 677
            K  SKS SS + +YGPD          + P   TGEFPGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+A +WFKAGA IF +GGL+YLGNPSLIHAQ+I+A  A QVVLMG VEGYR+ GGP GE  DPLYPG +FDP+G    P +F
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTF 215          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.356e-47
Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 3
Query:  405 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIG 653
            ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG +EGYR+ GGPLGE  DPLYPG +FDP+G
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLG 83          

HSP 2 Score: 53.9138 bits (128), Expect = 5.356e-47
Identity = 31/71 (43.66%), Postives = 35/71 (49.30%), Query Frame = 1
Query:  637 ALIPLGLADDPXAFAELKGKENQNGRWXYVSMVWFLXSGHCHRQGTVRETGRHLG*PCHKHAWAYPPTLSP 849
            A  PLGLADDP A AELK KE +NGR    SM  F        +G +     HL  P   +AWAY     P
Sbjct:   78 AFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVP 148          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.748e-35
Identity = 79/167 (47.31%), Postives = 95/167 (56.89%), Query Frame = 3
Query:  177 SKSVSSGSP----WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIG 653
            SK+VS  S     WYGPDR  +L        E P YL GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA +     L+Y G    I    +LA+ A +VVL+G  E YRI  G   +  D L+PGG FDP+G
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITNGL--DFEDKLHPGGPFDPLG 210          

HSP 2 Score: 40.4318 bits (93), Expect = 4.748e-35
Identity = 22/54 (40.74%), Postives = 28/54 (51.85%), Query Frame = 1
Query:  646 PLGLADDPXAFAELKGKENQNGRWXYVSMVWFLXSGHCHRQGTVRETGRHLG*P 807
            PLGLA DP   A LK KE +NGR    +M+ F    +   +G V    +HL  P
Sbjct:  208 PLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDP 261          
The following BLAST results are available for this feature:
BLAST of EY649938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB22_CUCSA6.190e-7791.16Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_MALDO3.717e-7372.43Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_CHLRE2.607e-6770.29Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO3.764e-6673.78Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC1.637e-6162.94Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU2.138e-6163.78Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE2.704e-5667.28Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA1.256e-5363.37Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY5.356e-4785.54Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH4.748e-3547.31Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-C06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649938 ID=EY649938; Name=EY649938; organism=Citrus sinensis; type=EST; length=923bp
CTTCTCTTGCTTACACAGCTTCTGTTGCTTACACAGCTTCTGCTTCTCAA
TTAAATTCCTCAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGT
CGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTG
GCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGC
CCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCGA
GCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACA
CTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTC
GAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTT
CCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGT
TCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGG
AACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCA
GGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGC
TCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCCATT
GGGTTTGGCTGATGACCCNNGAGCTTTTGCTGAGCTCAAAGGTAAGGAAA
ATCAGAATGGAAGGTGGNNCTATGTCTCCATGGTTTGGTTTCTTNCGTCA
GGCCATTGTCACCGGCAAGGGACCGTTAGAGAAACTGGCCGACACTTGGG
CTGACCCTGTCATAAACATGCCTGGGCCTACCCACCAACTTTGTCCCCGA
AAGTGAGCCTCGTGGAAAAAATTTTCTCCTTTTCGGCTCTTGGATCATGT
AAATCTGTGGGAGCCATGGAAGC
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