EY649938
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.216e-28 Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 3 Query: 486 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPI 650 LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE D LYPGGSFDP+ Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPL 56 HSP 2 Score: 48.1358 bits (113), Expect = 2.216e-28 Identity = 28/53 (52.83%), Postives = 31/53 (58.49%), Query Frame = 2 Query: 659 LMTXELLLSSKVRKIRMEGGXMSPWFGFXRQAIVTGKGPLEKLADTWADPVIN 817 L E KV++I+ M FGF QAIVTGKGPLE LAD ADPV N Sbjct: 59 LTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 111
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 2.162e-21 Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 3 Query: 507 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIGFG**PXSF 677 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDP+G P +F Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 208
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 2.162e-21 Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 3 Query: 507 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIGFG**PXSF 677 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDP+G P +F Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 208
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 2.162e-21 Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 3 Query: 507 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIGFG**PXSF 677 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDP+G P +F Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 57
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 2.162e-21 Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 3 Query: 507 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIGFG**PXSF 677 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDP+G P +F Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 206
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 2.162e-21 Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 3 Query: 507 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIGFG**PXSF 677 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDP+G P +F Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 206
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.371e-19 Identity = 58/156 (37.18%), Postives = 81/156 (51.92%), Query Frame = 3 Query: 213 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPIGFG 659 PDR + F G PP +L G PGD+G+D GL++DPE+ N++ E++HCRWAMLGA G PELL + G+ W+ AG Q + + +L + +L WA ++ G V I TD YPGG FDP+G+G Sbjct: 63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 208 HSP 2 Score: 24.6386 bits (52), Expect = 1.371e-19 Identity = 13/29 (44.83%), Postives = 15/29 (51.72%), Query Frame = 2 Query: 722 MSPWFGFXRQAIVTGKGPLEKLADTWADP 808 M WF Q I TG GP++ L ADP Sbjct: 234 MGAWF----QHIYTGTGPIDNLFAHLADP 258
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.921e-19 Identity = 61/169 (36.09%), Postives = 84/169 (49.70%), Query Frame = 3 Query: 174 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPIGFG 659 GS+SV+ + PDR + F G PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + GV W+ AG Q + + +L + +L WA ++ G V I TD YPGG FDP+G+G Sbjct: 50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 208 HSP 2 Score: 24.6386 bits (52), Expect = 3.921e-19 Identity = 13/29 (44.83%), Postives = 15/29 (51.72%), Query Frame = 2 Query: 722 MSPWFGFXRQAIVTGKGPLEKLADTWADP 808 M WF Q I TG GP++ L ADP Sbjct: 234 MGAWF----QHIYTGTGPIDNLFAHLADP 258
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 2.474e-18 Identity = 65/195 (33.33%), Postives = 88/195 (45.13%), Query Frame = 3 Query: 99 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIGFG**PXSF 677 VG LAPS +G T S V+ + W F G+P P++L G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L G W KA +G YLGNP + ++ I A + + + E R + YPGG+FDP+GF P F Sbjct: 13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKF 184 HSP 2 Score: 26.5646 bits (57), Expect = 2.474e-18 Identity = 18/47 (38.30%), Postives = 25/47 (53.19%), Query Frame = 2 Query: 689 KVRKIRMEGGXMSPWFGFX-RQAIVTGKGPLEKLADTWADPVINMPG 826 K+++I+ M + GF +Q+ G GPLE LA ADP N G Sbjct: 188 KLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 234
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 2.786e-16 Identity = 54/146 (36.99%), Postives = 72/146 (49.32%), Query Frame = 3 Query: 246 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIGFG**PXSF 677 G+P PSYL G PGD+G+D+ GL P + +E E+IHCRWAML G + PE L G W KA GG YLG P + ++ I A + + + VE R + YPGG+FDP+G+ P F Sbjct: 52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKF 185 HSP 2 Score: 25.0238 bits (53), Expect = 2.786e-16 Identity = 18/47 (38.30%), Postives = 24/47 (51.06%), Query Frame = 2 Query: 689 KVRKIRMEGGXMSPWFGFX-RQAIVTGKGPLEKLADTWADPVINMPG 826 KV++I+ + GF +Q+ G GPLE LA ADP N G Sbjct: 189 KVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIG 235 The following BLAST results are available for this feature:
BLAST of EY649938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >EY649938 ID=EY649938; Name=EY649938; organism=Citrus sinensis; type=EST; length=923bpback to top |