EY649938

Overview
NameEY649938
Unique NameEY649938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.216e-28
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 3
Query:  486 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPI 650
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDP+
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPL 56          

HSP 2 Score: 48.1358 bits (113), Expect = 2.216e-28
Identity = 28/53 (52.83%), Postives = 31/53 (58.49%), Query Frame = 2
Query:  659 LMTXELLLSSKVRKIRMEGGXMSPWFGFXRQAIVTGKGPLEKLADTWADPVIN 817
            L   E     KV++I+     M   FGF  QAIVTGKGPLE LAD  ADPV N
Sbjct:   59 LTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 111          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.162e-21
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 3
Query:  507 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIGFG**PXSF 677
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDP+G    P +F
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 208          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.162e-21
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 3
Query:  507 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIGFG**PXSF 677
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDP+G    P +F
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 208          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.162e-21
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 3
Query:  507 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIGFG**PXSF 677
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDP+G    P +F
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 57          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.162e-21
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 3
Query:  507 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIGFG**PXSF 677
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDP+G    P +F
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 206          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.162e-21
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 3
Query:  507 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIGFG**PXSF 677
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDP+G    P +F
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 206          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.371e-19
Identity = 58/156 (37.18%), Postives = 81/156 (51.92%), Query Frame = 3
Query:  213 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPIGFG 659
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDP+G+G
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 208          

HSP 2 Score: 24.6386 bits (52), Expect = 1.371e-19
Identity = 13/29 (44.83%), Postives = 15/29 (51.72%), Query Frame = 2
Query:  722 MSPWFGFXRQAIVTGKGPLEKLADTWADP 808
            M  WF    Q I TG GP++ L    ADP
Sbjct:  234 MGAWF----QHIYTGTGPIDNLFAHLADP 258          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.921e-19
Identity = 61/169 (36.09%), Postives = 84/169 (49.70%), Query Frame = 3
Query:  174 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPIGFG 659
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDP+G+G
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 208          

HSP 2 Score: 24.6386 bits (52), Expect = 3.921e-19
Identity = 13/29 (44.83%), Postives = 15/29 (51.72%), Query Frame = 2
Query:  722 MSPWFGFXRQAIVTGKGPLEKLADTWADP 808
            M  WF    Q I TG GP++ L    ADP
Sbjct:  234 MGAWF----QHIYTGTGPIDNLFAHLADP 258          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.474e-18
Identity = 65/195 (33.33%), Postives = 88/195 (45.13%), Query Frame = 3
Query:   99 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIGFG**PXSF 677
            VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDP+GF   P  F
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKF 184          

HSP 2 Score: 26.5646 bits (57), Expect = 2.474e-18
Identity = 18/47 (38.30%), Postives = 25/47 (53.19%), Query Frame = 2
Query:  689 KVRKIRMEGGXMSPWFGFX-RQAIVTGKGPLEKLADTWADPVINMPG 826
            K+++I+     M  + GF  +Q+   G GPLE LA   ADP  N  G
Sbjct:  188 KLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 234          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.786e-16
Identity = 54/146 (36.99%), Postives = 72/146 (49.32%), Query Frame = 3
Query:  246 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPIGFG**PXSF 677
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDP+G+   P  F
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKF 185          

HSP 2 Score: 25.0238 bits (53), Expect = 2.786e-16
Identity = 18/47 (38.30%), Postives = 24/47 (51.06%), Query Frame = 2
Query:  689 KVRKIRMEGGXMSPWFGFX-RQAIVTGKGPLEKLADTWADPVINMPG 826
            KV++I+     +    GF  +Q+   G GPLE LA   ADP  N  G
Sbjct:  189 KVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIG 235          
The following BLAST results are available for this feature:
BLAST of EY649938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB21_RAPSA2.216e-2883.93Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB2F_SOLLC2.162e-2184.21Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.162e-2184.21Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC2.162e-2184.21Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC2.162e-2184.21Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC2.162e-2184.21Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB12_SOLLC1.371e-1937.18Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY3.921e-1936.09Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB121_HORVU2.474e-1833.33Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC2.786e-1636.99Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-C06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649938 ID=EY649938; Name=EY649938; organism=Citrus sinensis; type=EST; length=923bp
CTTCTCTTGCTTACACAGCTTCTGTTGCTTACACAGCTTCTGCTTCTCAA
TTAAATTCCTCAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGT
CGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTG
GCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGC
CCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCGA
GCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACA
CTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTC
GAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTT
CCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGT
TCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGG
AACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCA
GGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGC
TCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCCATT
GGGTTTGGCTGATGACCCNNGAGCTTTTGCTGAGCTCAAAGGTAAGGAAA
ATCAGAATGGAAGGTGGNNCTATGTCTCCATGGTTTGGTTTCTTNCGTCA
GGCCATTGTCACCGGCAAGGGACCGTTAGAGAAACTGGCCGACACTTGGG
CTGACCCTGTCATAAACATGCCTGGGCCTACCCACCAACTTTGTCCCCGA
AAGTGAGCCTCGTGGAAAAAATTTTCTCCTTTTCGGCTCTTGGATCATGT
AAATCTGTGGGAGCCATGGAAGC
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