EY649938

Overview
NameEY649938
Unique NameEY649938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.226e-15
Identity = 56/136 (41.18%), Postives = 72/136 (52.94%), Query Frame = 3
Query:  252 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPL---GEVTDPLYPGGSFDPI 650
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF    QI+ +  +D+          +  A+ A QVV    +E +R  GG L    E  D  YPG  FDP+
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPL 488          

HSP 2 Score: 25.409 bits (54), Expect = 8.226e-15
Identity = 14/44 (31.82%), Postives = 23/44 (52.27%), Query Frame = 2
Query:  662 MTXELLLSSKVRKIRMEGGXMSPWFGFXRQAIVTGKGPLEKLAD 793
            +T E    ++++  R+    M+  FG   Q+ VTGK P+  L D
Sbjct:  490 LTTEYTKEAEIKNGRLA---MNGMFGLEVQSHVTGKSPINNLID 530          

HSP 3 Score: 74.3294 bits (181), Expect = 1.076e-12
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  243 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 470
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 5.239e-14
Identity = 65/199 (32.66%), Postives = 89/199 (44.72%), Query Frame = 3
Query:  147 GGRISMRKTGSKSV---SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVTDPLYPGGS-FDPIGFG 659
            G RIS   T   S    ++ +P       + L   S +  SYL G  PGD+G+D  GLS DPE    F + + L   EVI+ R+AMLGA G + PE+L + G+   E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R                     LG   DP YPGG  F+P+GFG
Sbjct:   24 GSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFG 212          

HSP 2 Score: 33.4982 bits (75), Expect = 5.239e-14
Identity = 18/43 (41.86%), Postives = 25/43 (58.14%), Query Frame = 2
Query:  689 KVRKIRMEGGXMSPWFGFXRQAIVTGKGPLEKLADTWADPVIN 817
            K+++I+     M    G+  QA+VTG GP + L D  ADPV N
Sbjct:  222 KLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNN 264          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 5.519e-13
Identity = 57/159 (35.85%), Postives = 77/159 (48.43%), Query Frame = 3
Query:  258 SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE------------VTDPLYPGGS-FDPIGFG 659
            SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L + G+   E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R       G +G+              +P YPGG  F+P+GFG
Sbjct:   66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFG 214          

HSP 2 Score: 31.187 bits (69), Expect = 5.519e-13
Identity = 16/43 (37.21%), Postives = 24/43 (55.81%), Query Frame = 2
Query:  689 KVRKIRMEGGXMSPWFGFXRQAIVTGKGPLEKLADTWADPVIN 817
            K+++++     M    G+  Q +VTG GP + L D  ADPV N
Sbjct:  224 KLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNN 266          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.535e-13
Identity = 47/138 (34.06%), Postives = 67/138 (48.55%), Query Frame = 3
Query:  255 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPIGF 656
            P YLTG  PGD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+    G+      W+ AG  + F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+P+ F
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPAGEVG---YPGGIFNPLNF 194          

HSP 2 Score: 28.4906 bits (62), Expect = 5.535e-13
Identity = 17/53 (32.08%), Postives = 27/53 (50.94%), Query Frame = 2
Query:  680 LSSKVRKIRMEGGXMSPWFGFXRQAIVTGKGP----LEKLADTWADPVINMPG 826
            L +K ++I      M  + GF  Q  VTGKGP    L+ ++D W + ++   G
Sbjct:  198 LEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLG 250          
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.193e-13
Identity = 47/138 (34.06%), Postives = 67/138 (48.55%), Query Frame = 3
Query:  255 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPIGF 656
            P YLTG   GD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+  + G+      W+ AG  Q F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+P+ F
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVG---YPGGIFNPLNF 195          

HSP 2 Score: 28.4906 bits (62), Expect = 7.193e-13
Identity = 14/29 (48.28%), Postives = 16/29 (55.17%), Query Frame = 2
Query:  722 MSPWFGFXRQAIVTGKGPLEKLADTWADP 808
            M  + GF  Q  VTGKGP E L    +DP
Sbjct:  213 MLAFLGFVVQHNVTGKGPFENLLQHLSDP 241          
The following BLAST results are available for this feature:
BLAST of EY649938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
LH18_EUGGR8.226e-1541.18Light-harvesting complex I LH38 proteins (Fragment... [more]
CB13_SOLLC5.239e-1432.66Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA5.519e-1335.85Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB24_PEA5.535e-1334.06Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH7.193e-1334.06Chlorophyll a-b binding protein 4, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-C06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649938 ID=EY649938; Name=EY649938; organism=Citrus sinensis; type=EST; length=923bp
CTTCTCTTGCTTACACAGCTTCTGTTGCTTACACAGCTTCTGCTTCTCAA
TTAAATTCCTCAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGT
CGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTG
GCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGC
CCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCGA
GCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACA
CTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTC
GAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTT
CCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGT
TCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGG
AACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCA
GGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGC
TCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCCATT
GGGTTTGGCTGATGACCCNNGAGCTTTTGCTGAGCTCAAAGGTAAGGAAA
ATCAGAATGGAAGGTGGNNCTATGTCTCCATGGTTTGGTTTCTTNCGTCA
GGCCATTGTCACCGGCAAGGGACCGTTAGAGAAACTGGCCGACACTTGGG
CTGACCCTGTCATAAACATGCCTGGGCCTACCCACCAACTTTGTCCCCGA
AAGTGAGCCTCGTGGAAAAAATTTTCTCCTTTTCGGCTCTTGGATCATGT
AAATCTGTGGGAGCCATGGAAGC
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