EY649938
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 8.226e-15 Identity = 56/136 (41.18%), Postives = 72/136 (52.94%), Query Frame = 3 Query: 252 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPL---GEVTDPLYPGGSFDPI 650 PP YLTGE GD G+D AGL+ADP TF + + EV HCR +ML +GC+ PELL G WF QI+ + +D+ + A+ A QVV +E +R GG L E D YPG FDP+ Sbjct: 380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPL 488 HSP 2 Score: 25.409 bits (54), Expect = 8.226e-15 Identity = 14/44 (31.82%), Postives = 23/44 (52.27%), Query Frame = 2 Query: 662 MTXELLLSSKVRKIRMEGGXMSPWFGFXRQAIVTGKGPLEKLAD 793 +T E ++++ R+ M+ FG Q+ VTGK P+ L D Sbjct: 490 LTTEYTKEAEIKNGRLA---MNGMFGLEVQSHVTGKSPINNLID 530 HSP 3 Score: 74.3294 bits (181), Expect = 1.076e-12 Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 3 Query: 243 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 470 + EPP+ LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL G+ WF+AG + Sbjct: 193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 5.239e-14 Identity = 65/199 (32.66%), Postives = 89/199 (44.72%), Query Frame = 3 Query: 147 GGRISMRKTGSKSV---SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVTDPLYPGGS-FDPIGFG 659 G RIS T S ++ +P + L S + SYL G PGD+G+D GLS DPE F + + L EVI+ R+AMLGA G + PE+L + G+ E WF+ G I G +Y + ++ ++ LMG E R LG DP YPGG F+P+GFG Sbjct: 24 GSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFG 212 HSP 2 Score: 33.4982 bits (75), Expect = 5.239e-14 Identity = 18/43 (41.86%), Postives = 25/43 (58.14%), Query Frame = 2 Query: 689 KVRKIRMEGGXMSPWFGFXRQAIVTGKGPLEKLADTWADPVIN 817 K+++I+ M G+ QA+VTG GP + L D ADPV N Sbjct: 222 KLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNN 264
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 5.519e-13 Identity = 57/159 (35.85%), Postives = 77/159 (48.43%), Query Frame = 3 Query: 258 SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE------------VTDPLYPGGS-FDPIGFG 659 SYL G PGDYG+D GLS DPE F + R L EVI+ R+AMLGA+G + PE L + G+ E WF+ G I G +Y + ++ ++ LMG E R G +G+ +P YPGG F+P+GFG Sbjct: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFG 214 HSP 2 Score: 31.187 bits (69), Expect = 5.519e-13 Identity = 16/43 (37.21%), Postives = 24/43 (55.81%), Query Frame = 2 Query: 689 KVRKIRMEGGXMSPWFGFXRQAIVTGKGPLEKLADTWADPVIN 817 K+++++ M G+ Q +VTG GP + L D ADPV N Sbjct: 224 KLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNN 266
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 5.535e-13 Identity = 47/138 (34.06%), Postives = 67/138 (48.55%), Query Frame = 3 Query: 255 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPIGF 656 P YLTG PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ G+ W+ AG + F+ ++ L H I W + G+V ++ P GEV YPGG F+P+ F Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPAGEVG---YPGGIFNPLNF 194 HSP 2 Score: 28.4906 bits (62), Expect = 5.535e-13 Identity = 17/53 (32.08%), Postives = 27/53 (50.94%), Query Frame = 2 Query: 680 LSSKVRKIRMEGGXMSPWFGFXRQAIVTGKGP----LEKLADTWADPVINMPG 826 L +K ++I M + GF Q VTGKGP L+ ++D W + ++ G Sbjct: 198 LEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLG 250
BLAST of EY649938 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 7.193e-13 Identity = 47/138 (34.06%), Postives = 67/138 (48.55%), Query Frame = 3 Query: 255 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPIGF 656 P YLTG GD G+D GL+ DPE + E+++ RWAMLG G + PE+ + G+ W+ AG Q F+ ++ L H I W + G+V ++ P GEV YPGG F+P+ F Sbjct: 64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVG---YPGGIFNPLNF 195 HSP 2 Score: 28.4906 bits (62), Expect = 7.193e-13 Identity = 14/29 (48.28%), Postives = 16/29 (55.17%), Query Frame = 2 Query: 722 MSPWFGFXRQAIVTGKGPLEKLADTWADP 808 M + GF Q VTGKGP E L +DP Sbjct: 213 MLAFLGFVVQHNVTGKGPFENLLQHLSDP 241 The following BLAST results are available for this feature:
BLAST of EY649938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >EY649938 ID=EY649938; Name=EY649938; organism=Citrus sinensis; type=EST; length=923bpback to top |