EY649936

Overview
NameEY649936
Unique NameEY649936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRIA_CYAPA (Cytochrome b6-f complex iron-sulfur subunit 1, cyanelle OS=Cyanophora paradoxa GN=petC-1 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.036e-63
Identity = 116/183 (63.39%), Postives = 139/183 (75.96%), Query Frame = 3
Query:  141 IKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*S-AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANV-ENGKVVFVPWTETDFRTGEAPWW 683
            + C A S   D VPDMGKR+LMNLLLLGA++ P      P+ +F  PP     AG G  AKDA+GND+  + WL TH PGDR+L +GLKGD TYL+V++D TL +YG+NAVCTHLGCVVPWN++ENKF+CPCHGSQY+   +VVRGPAPLSLALAH +V E+G V F PWTETDFRT  APWW
Sbjct:   59 VSCSAAS---DDVPDMGKRKLMNLLLLGAIAGPVAGAGGPFVSFLVPPKAGGGAGAGQAAKDALGNDVKVSSWLETHKPGDRSLAQGLKGDATYLIVKEDGTLENYGLNAVCTHLGCVVPWNASENKFMCPCHGSQYDRTGKVVRGPAPLSLALAHVSVLEDGVVAFEPWTETDFRTNTAPWW 238          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_TRIEI (Cytochrome b6-f complex iron-sulfur subunit OS=Trichodesmium erythraeum (strain IMS101) GN=petC PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.308e-63
Identity = 110/169 (65.09%), Postives = 130/169 (76.92%), Query Frame = 3
Query:  177 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWW 683
            VP MG+RQ MNLL  G V+      L P   +F PP    +GGG TAKDA+GNDII +++L  H  G+RTL +GLKGDPTY+V+E ++TLA YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY+N  +VVRGPAPLSLAL HANV + K+VF  W ETDFRTGE PWW
Sbjct:   10 VPSMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPSSGGSGGGVTAKDALGNDIIVSEFLANHNSGERTLAQGLKGDPTYVVIEGEQTLAEYGLNAVCTHLGCVVPWNGSENKFICPCHGSQYDNTGKVVRGPAPLSLALVHANVSDDKLVFTQWEETDFRTGEKPWW 178          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRIA_CHLRE (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Chlamydomonas reinhardtii GN=petC PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.936e-63
Identity = 115/198 (58.08%), Postives = 139/198 (70.20%), Query Frame = 3
Query:   96 PARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANV-ENGKVVFVPWTETDFRTGEAPWWA 686
            PA+   + ++ +   ++  A S     VPDM KR +MNL+L G   LP   + + Y  FF PP     GGG  AKDA+GNDI A +WL TH  GDR+L++GLKGDPTYL+V  D T+  YG+NAVCTHLGCVVPW +AENKF CPCHGSQYN + +VVRGPAPLSLALAH +V E+G V F  WTETDFRTG  PWWA
Sbjct:   12 PAKASAIRRSRVMPVVRAAAAS---SEVPDMNKRNIMNLILAGGAGLPITTLALGYGAFFVPPSSGGGGGGQAAKDALGNDIKAGEWLKTHLAGDRSLSQGLKGDPTYLIVTADSTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDVAESGLVTFSTWTETDFRTGLEPWWA 206          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRIA_VOLCA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Volvox carteri GN=petC PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 5.141e-63
Identity = 116/198 (58.59%), Postives = 139/198 (70.20%), Query Frame = 3
Query:   96 PARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANV-ENGKVVFVPWTETDFRTGEAPWWA 686
            P + Q   ++ +   ++  A S     VPDM KR +MNL+LLG  SLP G + + Y  FF PP      GG  AKDA+GNDI A  WL TH  GDR+L++GLKGDPTYL+V  D T+  YG+NAVCTHLGCVVPW +AENKF CPCHGSQYN + +VVRGPAPLSLALAH +V E+G V F  W+ETDFRTG  PWWA
Sbjct:   12 PCKAQATRRSRVMSVVRAAAVS---SEVPDMNKRNIMNLILLGGASLPVGSLALGYGAFFVPPSSGGGSGGQAAKDALGNDIKANAWLATHQKGDRSLSQGLKGDPTYLIVTADGTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDVQEDGLVTFSTWSETDFRTGLEPWWA 206          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRIA_ANAVT (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petC PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.496e-62
Identity = 109/170 (64.12%), Postives = 127/170 (74.71%), Query Frame = 3
Query:  177 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA 686
            VPDMG+RQ MNLL  G V+      L P   +F PP    AGGGTTAKD +GND+  + +L +H  GDRTL +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+   +VVRGPAP SLAL+HA  EN K+V  PWTETDFRTGE PWW+
Sbjct:   10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPATGGAGGGTTAKDELGNDVSVSKFLESHNVGDRTLVQGLKGDPTYIVVESKEAITDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDATGKVVRGPAPKSLALSHAKTENDKIVLTPWTETDFRTGEEPWWS 179          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_SYNP2 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petC PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.332e-62
Identity = 111/171 (64.91%), Postives = 132/171 (77.19%), Query Frame = 3
Query:  177 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANV-ENGKVVFVPWTETDFRTGEAPWWA 686
            VPD+G+RQ +NLL +G  +      L P   +F PP    AGGG  AKDA+GNDII +D+L TH  GDR+L +GLKGDPTY+VVE D T++SYGINA+CTHLGCVVPWN+AENKF+CPCHGSQY+   +VVRGPAPLSLAL HA V E+ K+ F  WTETDFRT EAPWWA
Sbjct:   10 VPDLGRRQFLNLLWVGTAAGTALGGLYPVIKYFIPPSSGGAGGGVIAKDALGNDIIVSDYLQTHTAGDRSLAQGLKGDPTYVVVEGDNTISSYGINAICTHLGCVVPWNTAENKFMCPCHGSQYDETGKVVRGPAPLSLALVHAEVTEDDKISFTDWTETDFRTDEAPWWA 180          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRIB_CYAPA (Cytochrome b6-f complex iron-sulfur subunit 2, cyanelle OS=Cyanophora paradoxa GN=petC-2 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.352e-62
Identity = 118/183 (64.48%), Postives = 134/183 (73.22%), Query Frame = 3
Query:  141 IKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*S-AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANV-ENGKVVFVPWTETDFRTGEAPWW 683
            I C A S   D VPDMGKR+LMNLLLLGA++ PT     P+ +F  PP     AG G  AKDA GNDI    WL T  PGDR+L +GLKGD TYL+V++D TL  YG+NAVCTHLGCVVPWN +E KF+CPCHGSQY+   +VVRGPAPLSLALAH NV E+G V F PWTETDFRT  APWW
Sbjct:   61 ISCSAAS---DEVPDMGKRKLMNLLLLGAIAGPTIGAGGPFVSFLVPPKSGGGAGAGQAAKDAAGNDIKVEKWLETXKPGDRSLAQGLKGDATYLIVKEDGTLEKYGLNAVCTHLGCVVPWNQSEGKFMCPCHGSQYDRTGKVVRGPAPLSLALAHVNVLEDGVVAFEPWTETDFRTNTAPWW 240          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_CYAP4 (Cytochrome b6-f complex iron-sulfur subunit OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=petC PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.684e-62
Identity = 108/169 (63.91%), Postives = 126/169 (74.56%), Query Frame = 3
Query:  177 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWW 683
            VPDMG+RQ MNLL  G+ +     ML P   +F PP     GGG  AKDA+GNDI  +D+L  H   DR L +GLKGDPTY+VV+ D T+  YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY+N  +VVRGPAPLSLALAHA V + K+ F PWTETDFRTG+ PWW
Sbjct:   10 VPDMGRRQFMNLLTFGSATGVALGMLYPVVRYFIPPASGGVGGGVVAKDALGNDISVSDFLAKHPANDRALAQGLKGDPTYIVVQDDHTIGDYGLNAVCTHLGCVVPWNISENKFICPCHGSQYDNTGKVVRGPAPLSLALAHAAVSDDKITFTPWTETDFRTGKEPWW 178          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_SYNPW (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain WH7803) GN=petC PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 9.696e-62
Identity = 109/177 (61.58%), Postives = 131/177 (74.01%), Query Frame = 3
Query:  156 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA 686
            T +PA  VP MG+RQ MNLL  G+V+      L P   +F PP    +GGGT+AKD +GN + A+ WL+TH  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+   +VVRGPAPLSLALA+ +VEN  V    WT+TDFRTGE PWWA
Sbjct:    2 TQMPAGDVPGMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPRAAGSGGGTSAKDELGNAVTASGWLSTHPAGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVENDNVFVSQWTDTDFRTGEKPWWA 178          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRIA_ANASP (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Anabaena sp. (strain PCC 7120) GN=petC1 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.266e-61
Identity = 108/170 (63.53%), Postives = 126/170 (74.12%), Query Frame = 3
Query:  177 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA 686
            VPDMG+RQ MNLL  G V+      L P   +F PP    AGGGTTAKD +GND+  + +L +H  GDRTL +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+   +VVRGPAP SLAL+HA  EN K+V   WTETDFRTGE PWW+
Sbjct:   10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPAAGGAGGGTTAKDELGNDVSVSKFLESHNVGDRTLVQGLKGDPTYIVVESKEAITDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDATGKVVRGPAPKSLALSHAKTENDKIVLTSWTETDFRTGEEPWWS 179          
The following BLAST results are available for this feature:
BLAST of EY649936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIA_CYAPA1.036e-6363.39Cytochrome b6-f complex iron-sulfur subunit 1, cya... [more]
UCRI_TRIEI2.308e-6365.09Cytochrome b6-f complex iron-sulfur subunit OS=Tri... [more]
UCRIA_CHLRE3.936e-6358.08Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_VOLCA5.141e-6358.59Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ANAVT1.496e-6264.12Cytochrome b6-f complex iron-sulfur subunit 1 OS=A... [more]
UCRI_SYNP23.332e-6264.91Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIB_CYAPA4.352e-6264.48Cytochrome b6-f complex iron-sulfur subunit 2, cya... [more]
UCRI_CYAP45.684e-6263.91Cytochrome b6-f complex iron-sulfur subunit OS=Cya... [more]
UCRI_SYNPW9.696e-6261.58Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIA_ANASP1.266e-6163.53Cytochrome b6-f complex iron-sulfur subunit 1 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-C04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649936 ID=EY649936; Name=EY649936; organism=Citrus sinensis; type=EST; length=929bp
CCCACGCGTCCGCTTCTCTCTCCTCAGCAACTCCTTCTCAGCTATGCTCA
AGCAAGGGTGGTATGTTCTGTCCATCAAGAGCTTTTCTTGTGAAACCAGC
AAGGACCCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAGTGCC
AGGCTACAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAGGCAG
CTCATGAATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGATTTAT
GTTGGTTCCTTATGCGACCTTCTTTGCCCCACCTGGTTTATGAAGTGCTG
GTGGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCCGCT
GATTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGGATT
GAAGGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCAT
CATATGGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGG
AATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAA
TAACCAATGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGG
CTCATGCCAACGTTGAAAATGGTAAGGTAGTCTTCGTTCCATGGACGGAA
ACAGATTTCAGAACTGGTGAAGCTCCATGGTGGGCTTAAACTTGTTCCGG
TGCCTGTGCTTTCATATTCAAGTTTTGGCCGGGTCGTTTGCTTTGCCGTA
CTGCATAACATACTGNTACGGACATGCTTTATCAGAATGAGCTTCCACAT
GTAAAGCTACTGGCTTGATCATGCTATCTTGCATCTTGGGCATCTGACAT
NNTCTCTATNCTTCATTCTTNGATCTAAAAATCTACCTCACATGTATGCT
CAGCTCACGTGGGAATAAGTTTATCATTA
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