EY649936

Overview
NameEY649936
Unique NameEY649936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_SYNE7 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus elongatus (strain PCC 7942) GN=petC PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.119e-60
Identity = 107/173 (61.85%), Postives = 127/173 (73.41%), Query Frame = 3
Query:  168 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA 686
            A  VP MG+RQ MNLL  G+V+      L P   +F PP    +GGG  AKDA+GND++ + +L  H  GDRTL +GLKGDPTYLVVE  + +  YGINAVCTHLGCVVPWN++ENKF CPCHGSQY+   +VVRGPAPLSLALAH +V + KV   PWTETDFRTG+ PWWA
Sbjct:    7 ASDVPSMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPSSGGSGGGVAAKDALGNDVVLSKFLADHNVGDRTLVQGLKGDPTYLVVESSEAIGDYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVRGPAPLSLALAHVSVTDDKVFLSPWTETDFRTGDNPWWA 179          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_MASLA (Cytochrome b6-f complex iron-sulfur subunit OS=Mastigocladus laminosus GN=petC PE=1 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 5.320e-60
Identity = 104/169 (61.54%), Postives = 125/169 (73.96%), Query Frame = 3
Query:  177 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWW 683
            VPDMG+RQ MNLL  G V+      L P   +F PP   + GGGTTAKD +GN++  + +L +H  GDR L +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+   +V+RGPAPLSLAL HA V++  +V  PWTETDFRTGE PWW
Sbjct:   10 VPDMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDETGKVIRGPAPLSLALCHATVQDDNIVLTPWTETDFRTGEKPWW 178          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRIB_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=petC2 PE=3 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 5.320e-60
Identity = 106/171 (61.99%), Postives = 130/171 (76.02%), Query Frame = 3
Query:  177 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANV-ENGKVVFVPWTETDFRTGEAPWWA 686
            VPD+G+RQ MNLL  G ++      L P   +  PP    +GGG TAKDA+GND+   ++L +H  GDR L +GLKGDPTY+VV+ D T+A+YGINAVCTHLGCVVPWN++ENKF+CPCHGSQYN + +VVRGPAPLSLALAHA V ++ K+V   WTETDFRT E PWWA
Sbjct:   10 VPDLGRRQFMNLLTFGTITGVAAGALYPAVKYLIPPSSGGSGGGVTAKDALGNDVKVTEFLASHNAGDRVLAQGLKGDPTYIVVQGDDTIANYGINAVCTHLGCVVPWNASENKFMCPCHGSQYNAEGKVVRGPAPLSLALAHATVTDDDKLVLSTWTETDFRTDEDPWWA 180          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_THEEB (Cytochrome b6-f complex iron-sulfur subunit OS=Thermosynechococcus elongatus (strain BP-1) GN=petC PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 7.682e-59
Identity = 104/170 (61.18%), Postives = 128/170 (75.29%), Query Frame = 3
Query:  177 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANV-ENGKVVFVPWTETDFRTGEAPWW 683
            VPDMG+RQ MNLL  G ++      L P   +F PP     GGG  AKDA+GNDI  +++L  H PGDR+L +G+KGDPTY++V +D  +A+YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY++  +VVRGPAPLSLAL  A V E+ K+VF PWTE DFRTG+ PWW
Sbjct:   10 VPDMGRRQFMNLLTFGTITGTALGALYPVVKYFIPPASGGTGGGAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVFTPWTEIDFRTGKEPWW 179          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_SYNEL (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus elongatus GN=petC PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 7.682e-59
Identity = 104/170 (61.18%), Postives = 128/170 (75.29%), Query Frame = 3
Query:  177 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANV-ENGKVVFVPWTETDFRTGEAPWW 683
            VPDMG+RQ MNLL  G ++      L P   +F PP     GGG  AKDA+GNDI  +++L  H PGDR+L +G+KGDPTY++V +D  +A+YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY++  +VVRGPAPLSLAL  A V E+ K+VF PWTE DFRTG+ PWW
Sbjct:   10 VPDMGRRQFMNLLTFGTITGTALGALYPVVKYFIPPASGGTGGGAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVFTPWTEIDFRTGKEPWW 179          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_PROMT (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain NATL2A) GN=petC PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.919e-58
Identity = 102/176 (57.95%), Postives = 128/176 (72.73%), Query Frame = 3
Query:  156 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWW 683
            T +    VP MG+RQ MNLL  G V+      L P A +F P      GGGT AKD +GN++ A+ WL+TH  GDR+L +GLKGDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NK++CPCHGSQY++  +VVRGPAPLSLA+AH ++E+ +V+   WTETDFRTG  PWW
Sbjct:    2 TQMTTADVPSMGRRQFMNLLTFGTVTGVALGALYPVAQYFTPYRAGGGGGGTNAKDELGNNVSASGWLSTHPVGDRSLVQGLKGDPTYLIVEGEDAITSYGINAICTHLGCVVPWNSGANKYMCPCHGSQYDSTGKVVRGPAPLSLAIAHVSIEDDQVLVSQWTETDFRTGTDPWW 177          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_PROM1 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain NATL1A) GN=petC PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.919e-58
Identity = 102/176 (57.95%), Postives = 128/176 (72.73%), Query Frame = 3
Query:  156 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWW 683
            T +    VP MG+RQ MNLL  G V+      L P A +F P      GGGT AKD +GN++ A+ WL+TH  GDR+L +GLKGDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NK++CPCHGSQY++  +VVRGPAPLSLA+AH ++E+ +V+   WTETDFRTG  PWW
Sbjct:    2 TQMTTADVPSMGRRQFMNLLTFGTVTGVALGALYPVAQYFTPYRAGGGGGGTNAKDELGNNVSASGWLSTHPVGDRSLVQGLKGDPTYLIVEGEDAITSYGINAICTHLGCVVPWNSGANKYMCPCHGSQYDSTGKVVRGPAPLSLAIAHVSIEDDQVLVSQWTETDFRTGTDPWW 177          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_PROM4 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9211) GN=petC PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.449e-57
Identity = 104/173 (60.12%), Postives = 125/173 (72.25%), Query Frame = 3
Query:  165 PADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWW 683
            P+D VP MG+RQ MNLL  G  +      L P A +F P      GGGT+AKD +GN I A+ WL+ H  GDR+L +GLKGDPTYL+VE  + + ++GINA+CTHLGCVVPWNS  NK+ICPCHGSQY+   +VVRGPAPLSLALAH +VE+ KV    W ETDFRTGE PWW
Sbjct:    6 PSD-VPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITASGWLSNHPAGDRSLVQGLKGDPTYLIVEGSEAIGNFGINAICTHLGCVVPWNSGANKYICPCHGSQYDANGKVVRGPAPLSLALAHIDVEDDKVFVSQWAETDFRTGEKPWW 177          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_PROMA (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus GN=petC PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.227e-56
Identity = 101/174 (58.05%), Postives = 124/174 (71.26%), Query Frame = 3
Query:  165 PADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA 686
            P+D VP MG+RQ MNLL  G  +      L P A FF P       GGTTAKD +GN + A  WL+ H  GDR+L +GLKGDPTYL+V+ D  + ++GINA+CTHLGCVVPWNS  NK+ICPCHGSQY+   +VVRGPAPLSLAL H ++++  V+   WTETDFRTG+ PWWA
Sbjct:    6 PSD-VPSMGRRQFMNLLTFGTATGVALGALYPVANFFMPLRAGGGTGGTTAKDELGNAVTATGWLSNHPAGDRSLVQGLKGDPTYLIVDGDAAIGNFGINAICTHLGCVVPWNSGANKYICPCHGSQYDANGKVVRGPAPLSLALTHIDIDDDNVLVSQWTETDFRTGDKPWWA 178          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_PROMS (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain AS9601) GN=petC PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.038e-55
Identity = 99/177 (55.93%), Postives = 123/177 (69.49%), Query Frame = 3
Query:  156 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA 686
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P      GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+   +VVRGPAPLSLALAH ++E+  V+   W+ETDFRT E PWWA
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
The following BLAST results are available for this feature:
BLAST of EY649936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_SYNE73.119e-6061.85Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_MASLA5.320e-6061.54Cytochrome b6-f complex iron-sulfur subunit OS=Mas... [more]
UCRIB_SYNY35.320e-6061.99Cytochrome b6-f complex iron-sulfur subunit 2 OS=S... [more]
UCRI_THEEB7.682e-5961.18Cytochrome b6-f complex iron-sulfur subunit OS=The... [more]
UCRI_SYNEL7.682e-5961.18Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_PROMT2.919e-5857.95Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM12.919e-5857.95Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM41.449e-5760.12Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMA1.227e-5658.05Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMS1.038e-5555.93Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-C04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649936 ID=EY649936; Name=EY649936; organism=Citrus sinensis; type=EST; length=929bp
CCCACGCGTCCGCTTCTCTCTCCTCAGCAACTCCTTCTCAGCTATGCTCA
AGCAAGGGTGGTATGTTCTGTCCATCAAGAGCTTTTCTTGTGAAACCAGC
AAGGACCCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAGTGCC
AGGCTACAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAGGCAG
CTCATGAATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGATTTAT
GTTGGTTCCTTATGCGACCTTCTTTGCCCCACCTGGTTTATGAAGTGCTG
GTGGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCCGCT
GATTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGGATT
GAAGGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCAT
CATATGGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGG
AATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAA
TAACCAATGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGG
CTCATGCCAACGTTGAAAATGGTAAGGTAGTCTTCGTTCCATGGACGGAA
ACAGATTTCAGAACTGGTGAAGCTCCATGGTGGGCTTAAACTTGTTCCGG
TGCCTGTGCTTTCATATTCAAGTTTTGGCCGGGTCGTTTGCTTTGCCGTA
CTGCATAACATACTGNTACGGACATGCTTTATCAGAATGAGCTTCCACAT
GTAAAGCTACTGGCTTGATCATGCTATCTTGCATCTTGGGCATCTGACAT
NNTCTCTATNCTTCATTCTTNGATCTAAAAATCTACCTCACATGTATGCT
CAGCTCACGTGGGAATAAGTTTATCATTA
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