EY649936

Overview
NameEY649936
Unique NameEY649936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_PROM9 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9312) GN=petC PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.356e-55
Identity = 98/177 (55.37%), Postives = 123/177 (69.49%), Query Frame = 3
Query:  156 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA 686
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P      GGGT+AKD +GN +    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+   +VVRGPAPLSLALAH ++E+  V+   W+ETDFRT E PWWA
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_PROM0 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9301) GN=petC PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.771e-55
Identity = 99/177 (55.93%), Postives = 123/177 (69.49%), Query Frame = 3
Query:  156 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA 686
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P      GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+   +VVRGPAPLSLALAH ++E+  V+   W+ETDFRT E PWWA
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEVGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_PROM2 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9215) GN=petC PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.313e-55
Identity = 99/177 (55.93%), Postives = 122/177 (68.93%), Query Frame = 3
Query:  156 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA 686
            T + +  VP MG+RQ MNLL  G  +      L P A +F P      GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+   +VVRGPAPLSLALAH ++E+  V+   W+ETDFRT E PWWA
Sbjct:    2 TQLSSKDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGGIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_PROMP (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=petC PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.946e-55
Identity = 97/177 (54.80%), Postives = 123/177 (69.49%), Query Frame = 3
Query:  156 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA 686
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P      GGGT+AKD +GN +    WL +H  GDR+L +GLKGDPTYL+V  +  +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+   +VVRGPAPLSLALAH +V++  V+   W+ETDFRT E PWWA
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLASHQAGDRSLVQGLKGDPTYLIVNSEGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_PROM5 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9515) GN=petC PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 5.153e-55
Identity = 97/177 (54.80%), Postives = 122/177 (68.93%), Query Frame = 3
Query:  156 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA 686
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P      GGGT+AKD +GN +    WL  H  GDR+L +GLKGDPTYL+V  +  +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+   +VVRGPAPLSLALAH +V++  V+   W+ETDFRT E PWWA
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLANHQAGDRSLVQGLKGDPTYLIVNSEGDIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRIA_BIGNA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Bigelowiella natans GN=petC PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.557e-54
Identity = 108/217 (49.77%), Postives = 130/217 (59.91%), Query Frame = 3
Query:   39 QLCSSKGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKD-KTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA 686
            QL + +G +  P  +F    +R           K   QA     D VPDMGKR+LMN L+L AV+         Y  +F PP     GG   A DA+GN + A  W  +H    R L +G+KGDPTYL+V  D  TL SYG+NA+CTHLGCVVPW++A NKF CPCHGSQY     VVRGPAP  L LAH   +NGK++  PWTETDFRTGE PWWA
Sbjct:   36 QLSAVRGKIAAPRTSFQNAVSRVSRNQLPSSSRKAVAQAFLSNPDMVPDMGKRKLMNNLVLAAVAPVVASAGGCYLYYFYPPQTGGGGGAVGALDALGNPVSAESWFKSHKKNARDLVQGIKGDPTYLIVNDDGSTLNSYGLNAICTHLGCVVPWDAASNKFKCPCHGSQYAPDGHVVRGPAPRPLQLAHVEDDNGKILLSPWTETDFRTGEKPWWA 252          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJB (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. GN=petC PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 9.435e-41
Identity = 82/161 (50.93%), Postives = 101/161 (62.73%), Query Frame = 3
Query:  180 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFR 662
            P M +R L+N LL G+V +     L P   +F PP     G G  A+DA+G  I  ++ L TH   DR L +GLKGDPTY+V++    +A+YG+NAVCTHLGCVVPWN  EN F CPCHGSQY    +V+RGPAP SL L  A V+   V F PW   DFR
Sbjct:   11 PPMSRRVLLNALLSGSVGVVVVGALYPVVKYFIPPSAGGGGEGLIAQDALGKPISVSELLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNVGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJA (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain JA-3-3Ab) GN=petC PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.102e-40
Identity = 81/161 (50.31%), Postives = 101/161 (62.73%), Query Frame = 3
Query:  180 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFR 662
            P M +R  +N LL  +V +     L P   +F PP    AG G  A+DA+G  I  ++ L TH   DR L +GLKGDPTY+V++    +A+YG+NAVCTHLGCVVPWN+ EN F CPCHGSQY    +V+RGPAP SL L  A V+   V F PW   DFR
Sbjct:   11 PPMSRRVFLNALLSSSVGVVVVGTLYPVVKYFIPPSSGGAGEGVIAQDALGKPISVSELLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNAGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_GLOVI (Cytochrome b6-f complex iron-sulfur subunit OS=Gloeobacter violaceus GN=petC PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.841e-37
Identity = 81/180 (45.00%), Postives = 104/180 (57.78%), Query Frame = 3
Query:  168 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK---GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFR-----TGEAPWW 683
            A  +P M +RQL++ +  GA++  T   L P   +F PP     G G  AKD  G DI  +  L    PG+  LT GL    GD TY+V+   K +A++GINAVCTHLGCVVPW++   +F CPCHGS YN    + RGPAP  LAL  A V + KV+  PWTE DFR       + P+W
Sbjct:    6 AQEIP-MSRRQLLSFVTGGAIAATTAATLYPVVLYFLPPSTAGGGEGVAAKDKEGKDISVSKLLAAATPGEPVLTLGLDVNGGDATYIVINDQKEIANFGINAVCTHLGCVVPWDNGAKQFKCPCHGSVYNADGGLERGPAPQPLALVKATVSDDKVLIAPWTEQDFRCTDLWCNKDPYW 184          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRIA_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=petC1 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 8.265e-37
Identity = 78/169 (46.15%), Postives = 97/169 (57.40%), Query Frame = 3
Query:  180 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPG-L*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWW 683
            P   +RQL+N L    V++           FF PP     AGGG  AKD +GN I A+  L    PG R L  GL GDPTYL+V++D +L S GI   CTHLGC  PWN  + +F CPCHGS+Y+    V RGPAPL L +    V + ++   PWT+ D RTGE PWW
Sbjct:   10 PSYSRRQLLNFLAGTTVAVTASAGAYAMGKFFVPPAEKGGAGGGIIAKDVLGNPIPASQIL-AEAPGTRALVAGLAGDPTYLIVKEDGSLDSIGIVDSCTHLGCTFPWNGNDQEFQCPCHGSRYHPDGSVARGPAPLPLKIVQVAVVDDQIFISPWTDLDPRTGEKPWW 177          
The following BLAST results are available for this feature:
BLAST of EY649936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_PROM91.356e-5555.37Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM01.771e-5555.93Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM22.313e-5555.93Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMP3.946e-5554.80Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM55.153e-5554.80Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRIA_BIGNA2.557e-5449.77Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_SYNJB9.435e-4150.93Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNJA2.102e-4050.31Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_GLOVI2.841e-3745.00Cytochrome b6-f complex iron-sulfur subunit OS=Glo... [more]
UCRIA_SYNY38.265e-3746.15Cytochrome b6-f complex iron-sulfur subunit 1 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-C04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649936 ID=EY649936; Name=EY649936; organism=Citrus sinensis; type=EST; length=929bp
CCCACGCGTCCGCTTCTCTCTCCTCAGCAACTCCTTCTCAGCTATGCTCA
AGCAAGGGTGGTATGTTCTGTCCATCAAGAGCTTTTCTTGTGAAACCAGC
AAGGACCCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAGTGCC
AGGCTACAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAGGCAG
CTCATGAATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGATTTAT
GTTGGTTCCTTATGCGACCTTCTTTGCCCCACCTGGTTTATGAAGTGCTG
GTGGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCCGCT
GATTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGGATT
GAAGGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCAT
CATATGGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGG
AATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAA
TAACCAATGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGG
CTCATGCCAACGTTGAAAATGGTAAGGTAGTCTTCGTTCCATGGACGGAA
ACAGATTTCAGAACTGGTGAAGCTCCATGGTGGGCTTAAACTTGTTCCGG
TGCCTGTGCTTTCATATTCAAGTTTTGGCCGGGTCGTTTGCTTTGCCGTA
CTGCATAACATACTGNTACGGACATGCTTTATCAGAATGAGCTTCCACAT
GTAAAGCTACTGGCTTGATCATGCTATCTTGCATCTTGGGCATCTGACAT
NNTCTCTATNCTTCATTCTTNGATCTAAAAATCTACCTCACATGTATGCT
CAGCTCACGTGGGAATAAGTTTATCATTA
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