EY649936

Overview
NameEY649936
Unique NameEY649936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRIC_ANASP (Cytochrome b6-f complex iron-sulfur subunit 3 OS=Anabaena sp. (strain PCC 7120) GN=petC3 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.997e-36
Identity = 79/176 (44.89%), Postives = 101/176 (57.39%), Query Frame = 3
Query:  159 SIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFF-APPGL*SAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWW 683
            SIP +  P + +RQL+N +    V++  G  L P   F  AP     AGG   AKD +G  I A+  L    P  R L  GL G+PTYL+V++D TL   G+   CTHLGC  PWN  + +F CPCHGS+Y     VVRGPAPL L +    V +  ++  PWTETD RTG+ PWW
Sbjct:    4 SIPIES-PSLSRRQLLNFITGATVAVTAGAALYPAGKFLIAPAEKTGAGGAILAKDILGKQIPASQIL-AEPPQTRALVAGLAGEPTYLIVKEDHTLDRIGLVDNCTHLGCTFPWNPLDQQFQCPCHGSRYAPDGSVVRGPAPLPLKIVQVAVIDNSILISPWTETDPRTGKKPWW 177          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRIB_ANAVT (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petC2 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.014e-34
Identity = 77/169 (45.56%), Postives = 93/169 (55.03%), Query Frame = 3
Query:  180 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*S-AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWW 683
            P M +RQL+N      V+      + P   FF PP   + A GG  AKD IG+ I A+  L     G R L  GL G+PTYL V +D TL   GI   CTHLGC  PWN  + +F CPCHGS+Y+ Q  V RGPA   L L H  V++  +    W ETD RTGE PWW
Sbjct:   10 PSMSRRQLLNFFTGAIVAATASAAIYPATKFFMPPAESTDAEGGVLAKDKIGHPIPASQIL-VQASGTRALIAGLAGEPTYLTVREDGTLDPMGIVNNCTHLGCTFPWNPVDQQFQCPCHGSRYDAQGSVERGPANRPLKLVHVQVKDDYIWISSWQETDPRTGEKPWW 177          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRIB_ANASP (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Anabaena sp. (strain PCC 7120) GN=petC2 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.905e-33
Identity = 76/169 (44.97%), Postives = 93/169 (55.03%), Query Frame = 3
Query:  180 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGL*S-AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWW 683
            P M +RQL+N      V+      + P   FF PP   + A GG  A+D IG+ I A+  L     G R L  GL G+PTYL V +D TL   GI   CTHLGC  PWN  + +F CPCHGS+Y+ Q  V RGPA   L L    V++  +   PW ETD RTGE PWW
Sbjct:   10 PSMSRRQLLNFFTGAIVATTASAAIYPATKFFMPPAESTDAEGGILAQDKIGHPIPASQIL-AQASGTRALIAGLAGEPTYLTVREDGTLDPMGIVNNCTHLGCTFPWNPVDQQFQCPCHGSRYDAQGSVERGPANRPLKLVQVQVKDDYIWISPWQETDPRTGEKPWW 177          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_CHLTE (Cytochrome b6-f complex iron-sulfur subunit OS=Chlorobium tepidum GN=petC PE=3 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 2.677e-11
Identity = 29/75 (38.67%), Postives = 46/75 (61.33%), Query Frame = 3
Query:  408 DPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVV 632
            D   +VV    +L +  ++A+CTHLGC+V W+ A +   CPCHG++Y    +++ GP PL L      +E+GK+V
Sbjct:  105 DDKVIVVNHGGSLTA--VSAICTHLGCLVHWDEAADMIACPCHGAKYTQDGKIISGPQPLPLKQYKVKIEDGKIV 177          
BLAST of EY649936 vs. ExPASy Swiss-Prot
Match: UCRI_CHLLT (Cytochrome b6-f complex iron-sulfur subunit OS=Chlorobium limicola f.sp. thiosulfatophilum GN=petC PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.965e-11
Identity = 29/71 (40.85%), Postives = 44/71 (61.97%), Query Frame = 3
Query:  420 LVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQ*RVVRGPAPLSLALAHANVENGKVV 632
            +VV K   L +  ++AVCTHLGC+V W  A+N++ CPCHG++Y     ++ GP PL L    A +E   ++
Sbjct:  109 IVVNKGGALTA--VSAVCTHLGCLVNWVDADNQYFCPCHGAKYKLTGEIISGPQPLPLKQYKARIEGDSII 177          
The following BLAST results are available for this feature:
BLAST of EY649936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIC_ANASP6.997e-3644.89Cytochrome b6-f complex iron-sulfur subunit 3 OS=A... [more]
UCRIB_ANAVT5.014e-3445.56Cytochrome b6-f complex iron-sulfur subunit 2 OS=A... [more]
UCRIB_ANASP1.905e-3344.97Cytochrome b6-f complex iron-sulfur subunit 2 OS=A... [more]
UCRI_CHLTE2.677e-1138.67Cytochrome b6-f complex iron-sulfur subunit OS=Chl... [more]
UCRI_CHLLT5.965e-1140.85Cytochrome b6-f complex iron-sulfur subunit OS=Chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-C04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649936 ID=EY649936; Name=EY649936; organism=Citrus sinensis; type=EST; length=929bp
CCCACGCGTCCGCTTCTCTCTCCTCAGCAACTCCTTCTCAGCTATGCTCA
AGCAAGGGTGGTATGTTCTGTCCATCAAGAGCTTTTCTTGTGAAACCAGC
AAGGACCCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAGTGCC
AGGCTACAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAGGCAG
CTCATGAATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGATTTAT
GTTGGTTCCTTATGCGACCTTCTTTGCCCCACCTGGTTTATGAAGTGCTG
GTGGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCCGCT
GATTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGGATT
GAAGGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCAT
CATATGGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGG
AATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAA
TAACCAATGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGG
CTCATGCCAACGTTGAAAATGGTAAGGTAGTCTTCGTTCCATGGACGGAA
ACAGATTTCAGAACTGGTGAAGCTCCATGGTGGGCTTAAACTTGTTCCGG
TGCCTGTGCTTTCATATTCAAGTTTTGGCCGGGTCGTTTGCTTTGCCGTA
CTGCATAACATACTGNTACGGACATGCTTTATCAGAATGAGCTTCCACAT
GTAAAGCTACTGGCTTGATCATGCTATCTTGCATCTTGGGCATCTGACAT
NNTCTCTATNCTTCATTCTTNGATCTAAAAATCTACCTCACATGTATGCT
CAGCTCACGTGGGAATAAGTTTATCATTA
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