EY649930 | Citrus Genome Database

Overview


Name	EY649930
Unique Name	EY649930
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	910

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY649930 vs. ExPASy Swiss-Prot
Match: COXZ_MESSB (Cytochrome c oxidase assembly protein ctaG OS=Mesorhizobium sp. (strain BNC1) GN=ctaG PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.760e-16
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 2

Query:  416 SHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGIQWKFIP 682
            S  + ++++R +      +  AMVG ++AAVPLYR FCQ TGYGGT QR E   +         T+  R + V+F+A+ + G+ W+F P
Sbjct:    8 SEVTRDRRNRGVAFVCAGVFVAMVGMSFAAVPLYRLFCQVTGYGGTTQRVEQYSD---------TILDRTINVRFDANTS-GVPWEFKP 86

HSP 2 Score: 36.1946 bits (82), Expect = 1.760e-16
Identity = 18/42 (42.86%), Postives = 21/42 (50.00%), Query Frame = 3

Query:  762 TGVSTYNVTPMKAAVYFNKYNAFALRSSVFSP-RADDMPVFF 884
            TG +TYNV P  A  YFNK   F        P +  +MPV F
Sbjct:  114 TGTATYNVAPALAGAYFNKIECFCFTKQSLEPGQTYEMPVQF 155

HSP 3 Score: 25.0238 bits (53), Expect = 1.760e-16
Identity = 11/31 (35.48%), Postives = 16/31 (51.61%), Query Frame = 1

Query:  664 PMEVYSNQREVRVKPGESALAXYTAENRSST 756
            P E    QRE+ ++ GE+    Y A N + T
Sbjct:   81 PWEFKPKQREITLRIGETTEIAYVARNNAPT 111

[Close]

BLAST of EY649930 vs. ExPASy Swiss-Prot
Match: COXZ_RHILO (Cytochrome c oxidase assembly protein ctaG OS=Rhizobium loti GN=ctaG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.214e-16
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 2

Query:  467 ALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGIQWKFIPTK 688
            A    M+G  YAAVPLY+ FCQATGYGGT QR   VE++ A     G V  RE+ V+F+A++A G+ W+F P +
Sbjct:   20 AFFTGMIGMAYAAVPLYKMFCQATGYGGTTQR---VEKQYA-----GRVLDREITVRFDANIA-GVPWEFQPVQ 84

HSP 2 Score: 37.7354 bits (86), Expect = 2.214e-16
Identity = 21/49 (42.86%), Postives = 26/49 (53.06%), Query Frame = 3

Query:  744 SKFDS-ITGVSTYNVTPMKAAVYFNKYNAFALRSSVFSP-RADDMPVFF 884
            +KFD  +TG +T+NV P  A  YFNK   F    +   P    DMPV F
Sbjct:  103 NKFDRPVTGRATFNVQPELAGPYFNKVECFCFTDTSLKPGETVDMPVLF 151

[Close]

BLAST of EY649930 vs. ExPASy Swiss-Prot
Match: COXZ_RHIL3 (Cytochrome c oxidase assembly protein ctaG OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=ctaG PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 2.279e-16
Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = 2

Query:  413 ASHASTEQKSRK----MLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGIQWKFIPTK 688
            + +A T +K  +    +++   + VF M   +YAAVPLYR FCQ TGY GT QR + V            V  R + V F+A+VA G+QW F P +
Sbjct:    2 SENAGTPKKQGRNNGAVVMMCLSFVFGMGAMSYAAVPLYRIFCQVTGYNGTTQRVDQV---------SSVVLDRTMRVTFDANVAPGLQWDFKPVE 88

HSP 2 Score: 35.4242 bits (80), Expect = 2.279e-16
Identity = 18/41 (43.90%), Postives = 22/41 (53.66%), Query Frame = 3

Query:  765 GVSTYNVTPMKAAVYFNKYNAFALRSSVFSPRAD-DMPVFF 884
            G + +NVTP +A VYFNK   F    +   P    DMPV F
Sbjct:  115 GQAVFNVTPGEAGVYFNKVQCFCFTETDLKPGEKLDMPVVF 155

HSP 3 Score: 26.5646 bits (57), Expect = 2.279e-16
Identity = 12/23 (52.17%), Postives = 16/23 (69.57%), Query Frame = 1

Query:  685 QREVRVKPGESALAXYTAENRSS 753
            +REV  K GE+    +TAENRS+
Sbjct:   88 EREVNPKIGETIQVNFTAENRSN 110

[Close]

BLAST of EY649930 vs. ExPASy Swiss-Prot
Match: COXZ_OCHA4 (Cytochrome c oxidase assembly protein ctaG OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=ctaG PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.951e-16
Identity = 36/99 (36.36%), Postives = 52/99 (52.53%), Query Frame = 2

Query:  413 ASHASTEQKSRKMLLYLTALVFA-------MVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGIQWKFIPTK 688
            A     +QK +K       + FA       M+G+ YA+VPLYR FCQ TGYGGT QR E   +         T+  + + V+F+A+ A+G+ W F P +
Sbjct:    2 ADQQEKDQKLKKQQRSNATIAFACLSFFVCMIGAAYASVPLYRIFCQVTGYGGTTQRVEQYSD---------TILDKTIKVRFDANTANGLAWDFKPVQ 91

HSP 2 Score: 35.4242 bits (80), Expect = 2.951e-16
Identity = 19/47 (40.43%), Postives = 25/47 (53.19%), Query Frame = 3

Query:  750 FDSIT-GVSTYNVTPMKAAVYFNKYNAFALRSSVFSPRAD-DMPVFF 884
            FD  T G +++NV P +A  YFNK   F    +   P  D +MPV F
Sbjct:  112 FDQPTYGRASFNVAPGRAGAYFNKVECFCFTDTTLQPGEDMEMPVVF 158

HSP 3 Score: 24.2534 bits (51), Expect = 2.951e-16
Identity = 11/25 (44.00%), Postives = 14/25 (56.00%), Query Frame = 1

Query:  685 QREVRVKPGESALAXYTAENRSSTP 759
            QREV V+ GE+ +  Y A N    P
Sbjct:   91 QREVTVRIGETTMIKYEARNLFDQP 115

[Close]

BLAST of EY649930 vs. ExPASy Swiss-Prot
Match: COXZ_RHILW (Cytochrome c oxidase assembly protein ctaG OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=ctaG PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.951e-16
Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = 2

Query:  449 MLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGIQWKFIPTK 688
            +++   + VF M   +YAAVPLYR FCQ TGY GT QR + V            V  R + V F+A+VA G+QW F P +
Sbjct:   18 VVMMCLSFVFGMGAMSYAAVPLYRIFCQVTGYNGTTQRVDQV---------SSVVLDRTMRVTFDANVAPGLQWDFKPVE 88

HSP 2 Score: 35.4242 bits (80), Expect = 2.951e-16
Identity = 18/41 (43.90%), Postives = 22/41 (53.66%), Query Frame = 3

Query:  765 GVSTYNVTPMKAAVYFNKYNAFALRSSVFSPRAD-DMPVFF 884
            G + +NVTP +A VYFNK   F    +   P    DMPV F
Sbjct:  115 GQAVFNVTPGEAGVYFNKVQCFCFTETDLKPGEKLDMPVVF 155

HSP 3 Score: 26.5646 bits (57), Expect = 2.951e-16
Identity = 12/23 (52.17%), Postives = 16/23 (69.57%), Query Frame = 1

Query:  685 QREVRVKPGESALAXYTAENRSS 753
            +REV  K GE+    +TAENRS+
Sbjct:   88 EREVNPKIGETIQVHFTAENRSN 110

[Close]

BLAST of EY649930 vs. ExPASy Swiss-Prot
Match: COXZ_RHISN (Cytochrome c oxidase assembly protein ctaG OS=Rhizobium sp. (strain NGR234) GN=ctaG PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 4.953e-16
Identity = 30/74 (40.54%), Postives = 39/74 (52.70%), Query Frame = 2

Query:  467 ALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGIQWKFIPTK 688
            A V  MVG  YAAVPLY  FC+ TGY GT QR E   +          +   ++ V F+A+V  G+ W F P +
Sbjct:   23 AFVAGMVGMAYAAVPLYDMFCRVTGYNGTTQRVEQASD---------VILDEKIKVTFDANVGPGLAWDFKPVQ 87

HSP 2 Score: 40.817 bits (94), Expect = 4.953e-16
Identity = 19/42 (45.24%), Postives = 24/42 (57.14%), Query Frame = 3

Query:  762 TGVSTYNVTPMKAAVYFNKYNAFALRSSVFSPRAD-DMPVFF 884
            TG +T+NVTPM A  YFNK   F    +   P  + +MPV F
Sbjct:  113 TGQATFNVTPMAAGAYFNKVQCFCFTETTLQPGEEMEMPVVF 154

HSP 3 Score: 25.409 bits (54), Expect = 4.953e-16
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 1

Query:  685 QREVRVKPGESALAXYTAENRSSTP 759
            QR++ V+ GE+    Y A+N SS P
Sbjct:   87 QRDIDVRIGETVQVMYRAKNLSSKP 111

[Close]

BLAST of EY649930 vs. ExPASy Swiss-Prot
Match: COXZ_RHIE6 (Cytochrome c oxidase assembly protein ctaG OS=Rhizobium etli (strain CIAT 652) GN=ctaG PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 6.404e-16
Identity = 35/80 (43.75%), Postives = 46/80 (57.50%), Query Frame = 2

Query:  449 MLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGIQWKFIPTK 688
            ++L   + VF M   +YAAVPLYR FCQ TGY GT QR E +            V  R++ V F+A+VA G+QW F P +
Sbjct:   18 VVLMCLSFVFGMGAMSYAAVPLYRIFCQVTGYNGTTQRVEQM---------SSVVLDRKMRVTFDANVAPGLQWDFKPVE 88

HSP 2 Score: 33.8834 bits (76), Expect = 6.404e-16
Identity = 17/41 (41.46%), Postives = 22/41 (53.66%), Query Frame = 3

Query:  765 GVSTYNVTPMKAAVYFNKYNAFALRSSVFSPRAD-DMPVFF 884
            G + +NVTP +A VYFNK   F    +   P    +MPV F
Sbjct:  115 GQAVFNVTPGEAGVYFNKVQCFCFTETDLKPGEKLEMPVVF 155

HSP 3 Score: 25.409 bits (54), Expect = 6.404e-16
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 1

Query:  685 QREVRVKPGESALAXYTAENRSS 753
            +REV  + GE+    +TAENRS+
Sbjct:   88 EREVNPRIGETIQVKFTAENRSN 110

[Close]

BLAST of EY649930 vs. ExPASy Swiss-Prot
Match: COX11_YEAST (Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Saccharomyces cerevisiae GN=COX11 PE=2 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 8.078e-16
Identity = 29/85 (34.12%), Postives = 46/85 (54.12%), Query Frame = 2

Query:  437 KSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGG---TVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGIQWKFIP 682
            K R +  Y +++    +G  YAAVPLYR  C  TG+GG   T +RK T ++ I         T + + + F ++V+  + WKF+P
Sbjct:   81 KDRTVAFYFSSVAVLFLGLAYAAVPLYRAICARTGFGGIPITDRRKFTDDKLIP------VDTEKRIRISFTSEVSQILPWKFVP 159

HSP 2 Score: 37.7354 bits (86), Expect = 8.078e-16
Identity = 18/43 (41.86%), Postives = 25/43 (58.14%), Query Frame = 3

Query:  759 ITGVSTYNVTPMKAAVYFNKYNAFALRSSVFSPRAD-DMPVFF 884
            I G++TY++ P +AA YFNK   F       +   + DMPVFF
Sbjct:  186 IIGMATYSIAPGEAAQYFNKIQCFCFEEQKLAAGEEIDMPVFF 228

HSP 3 Score: 32.3426 bits (72), Expect = 8.078e-16
Identity = 16/29 (55.17%), Postives = 19/29 (65.52%), Query Frame = 1

Query:  664 PMEVYSNQREVRVKPGESALAXYTAENRS 750
            P +    QREV V PGE+ALA Y A+N S
Sbjct:  154 PWKFVPQQREVYVLPGETALAFYKAKNYS 182

[Close]

BLAST of EY649930 vs. ExPASy Swiss-Prot
Match: COXZ_BRUSU (Cytochrome c oxidase assembly protein ctaG OS=Brucella suis GN=ctaG PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.798e-15
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 2

Query:  482 MVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGIQWKFIP 682
            M+G+ YA+VPLYR FCQ TGYGGT QR E   +         T+  + + V+F+A++A+G+ W F P
Sbjct:   29 MIGAAYASVPLYRIFCQVTGYGGTTQRVEQYSD---------TILDKTIKVRFDANIANGLPWDFKP 86

HSP 2 Score: 33.4982 bits (75), Expect = 1.798e-15
Identity = 15/41 (36.59%), Postives = 22/41 (53.66%), Query Frame = 3

Query:  765 GVSTYNVTPMKAAVYFNKYNAFALRSSVFSPRAD-DMPVFF 884
            G +++NV P +A  YFNK   F    +   P  D ++PV F
Sbjct:  115 GRASFNVAPGRAGAYFNKVECFCFTDNTLKPGEDLELPVVF 155

HSP 3 Score: 24.2534 bits (51), Expect = 1.798e-15
Identity = 11/27 (40.74%), Postives = 15/27 (55.56%), Query Frame = 1

Query:  664 PMEVYSNQREVRVKPGESALAXYTAEN 744
            P +    QREV V+ GE+ +  Y A N
Sbjct:   81 PWDFKPMQREVTVRIGETTMIKYEAHN 107

[Close]

BLAST of EY649930 vs. ExPASy Swiss-Prot
Match: COXZ_BRUSI (Cytochrome c oxidase assembly protein ctaG OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=ctaG PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.798e-15
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 2

Query:  482 MVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGIQWKFIP 682
            M+G+ YA+VPLYR FCQ TGYGGT QR E   +         T+  + + V+F+A++A+G+ W F P
Sbjct:   29 MIGAAYASVPLYRIFCQVTGYGGTTQRVEQYSD---------TILDKTIKVRFDANIANGLPWDFKP 86

HSP 2 Score: 33.4982 bits (75), Expect = 1.798e-15
Identity = 15/41 (36.59%), Postives = 22/41 (53.66%), Query Frame = 3

Query:  765 GVSTYNVTPMKAAVYFNKYNAFALRSSVFSPRAD-DMPVFF 884
            G +++NV P +A  YFNK   F    +   P  D ++PV F
Sbjct:  115 GRASFNVAPGRAGAYFNKVECFCFTDNTLKPGEDLELPVVF 155

HSP 3 Score: 24.2534 bits (51), Expect = 1.798e-15
Identity = 11/27 (40.74%), Postives = 15/27 (55.56%), Query Frame = 1

Query:  664 PMEVYSNQREVRVKPGESALAXYTAEN 744
            P +    QREV V+ GE+ +  Y A N
Sbjct:   81 PWDFKPMQREVTVRIGETTMIKYEAHN 107

The following BLAST results are available for this feature:

BLAST of EY649930 vs. ExPASy Swiss-Prot

BLAST of EY649930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39


Match Name	E-value	Identity	Description
COXZ_MESSB	1.760e-16	38.20	Cytochrome c oxidase assembly protein ctaG OS=Meso...	[more]
COXZ_RHILO	2.214e-16	50.00	Cytochrome c oxidase assembly protein ctaG OS=Rhiz...	[more]
COXZ_RHIL3	2.279e-16	38.54	Cytochrome c oxidase assembly protein ctaG OS=Rhiz...	[more]
COXZ_OCHA4	2.951e-16	36.36	Cytochrome c oxidase assembly protein ctaG OS=Ochr...	[more]
COXZ_RHILW	2.951e-16	42.50	Cytochrome c oxidase assembly protein ctaG OS=Rhiz...	[more]
COXZ_RHISN	4.953e-16	40.54	Cytochrome c oxidase assembly protein ctaG OS=Rhiz...	[more]
COXZ_RHIE6	6.404e-16	43.75	Cytochrome c oxidase assembly protein ctaG OS=Rhiz...	[more]
COX11_YEAST	8.078e-16	34.12	Cytochrome c oxidase assembly protein COX11, mitoc...	[more]
COXZ_BRUSU	1.798e-15	44.78	Cytochrome c oxidase assembly protein ctaG OS=Bruc...	[more]
COXZ_BRUSI	1.798e-15	44.78	Cytochrome c oxidase assembly protein ctaG OS=Bruc...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-100-005-B09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY649930 ID=EY649930; Name=EY649930; organism=Citrus sinensis; type=EST; length=910bp
ACCTATTGGTNACGCCCCCAGTTCTCGGTCCGNATTCCCGCCTCGACCCC
GCGTCCGAGAAATTTGAGTCGCCGAGAGAAAAATGCGGCTGCTTCTGCAT
TTTTGCTGCTGACTTGTGGGTTAATTGTGACACCACTGCTTTCCTTTTAT
GTTTGGAAGGATGTCATTGTCAAGGCTTTCAAGTAGAACCCATATATTGC
CACTCCTACAACAGTCCATATGCGTAAAAGATGTTCTGTGGTCGAATTAT
AAGTATACCAGAGTTGATACTAGCTGCTATGCTAGTGTGTGGGGTTTAAT
GCCAAGGTGTGGATATGGCTCAAATATGACTAATGGGTATCGGAAACCTC
AGTCTTTTGGCTCTGGATGTCTTTGGAAATCCAATTCGTTTTCTAGCTTT
CAGCGTCATTATGCTTCTCATGCTTCAACAGAGCAGAAATCAAGAAAGAT
GCTTTTATACCTCACAGCATTGGTTTTTGCAATGGTTGGAAGTACTTATG
CCGCCGTACCTTTGTATAGGAGATTCTGCCAGGCTACTGGCTATGGTGGT
ACTGTTCAACGAAAAGAGACTGTTGAAGAAAAGATTGCTCGGCATTCCAA
AGATGGAACTGTCACTACAAGGGAAGTTGTTGTGCAATTCAACGCTGATG
TAGCTGATGGAATCCAATGGAAGTTTATTCCAACCAAAGAGAGGTAAGGG
TAAAGCCTGGAGAAAGCGCACTTGCATTNTACACTGCTGAGAATCGAAGT
TCGACTCCATAACTGGTGTCTCTACTTATAATGTCACCCCTATGAAGGCT
GCTGTCTACTTCAATAAATACAATGCTTTTGCTTTGAGGAGCAGCGTCTT
CTCCCCGAGAGCAGATGACATGCCTGTATTCTTTACATTGACCCTGAGTT
NGAACAATCC