EY649930

Overview
NameEY649930
Unique NameEY649930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649930 vs. ExPASy Swiss-Prot
Match: COXZ_RICFE (Cytochrome c oxidase assembly protein ctaG OS=Rickettsia felis GN=ctaG PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 7.095e-14
Identity = 33/88 (37.50%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  434 QKSRKMLLY-LTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGIQWKFIPTKER 694
            +KS K L + L  L+ +MV  ++A+VP+Y  FC+ TGYGGT     T +E ++ +SK     T+ ++++F+A+V   + W+FIP ++R
Sbjct:    3 KKSNKNLAFSLLGLIISMVLLSFASVPIYNLFCKVTGYGGT-----TAKETVSVYSK--VKGTKPIIIEFDANVDKDLPWRFIPRQQR 83          

HSP 2 Score: 34.2686 bits (77), Expect = 7.095e-14
Identity = 20/47 (42.55%), Postives = 25/47 (53.19%), Query Frame = 3
Query:  753 DSITGVSTYNVTPMKAAVYFNKYNAFALRSSVFSPRADD---MPVFF 884
            + I G S YNVTP KA  YF K + F     +   +AD+   MPV F
Sbjct:  104 NDIIGTSVYNVTPNKAGKYFVKIHCFCFEEQLL--KADEKVLMPVTF 148          
BLAST of EY649930 vs. ExPASy Swiss-Prot
Match: COXZ_RHIEC (Cytochrome c oxidase assembly protein ctaG OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ctaG PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.193e-13
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = 2
Query:  449 MLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGIQWKFIPTK 688
            +++   + VF M   +YAAVPLYR FCQ TGY GT QR E +            V  R++ V F+A+VA G+QW F P +
Sbjct:   18 VVMMCLSFVFGMGAMSYAAVPLYRIFCQVTGYNGTTQRVEQM---------SSVVLDRKMRVTFDANVAPGLQWNFKPVE 88          

HSP 2 Score: 32.3426 bits (72), Expect = 1.193e-13
Identity = 16/41 (39.02%), Postives = 21/41 (51.22%), Query Frame = 3
Query:  765 GVSTYNVTPMKAAVYFNKYNAFALRSSVFSPRAD-DMPVFF 884
            G + +NVTP +A  YFNK   F    +   P    +MPV F
Sbjct:  115 GQAVFNVTPGEAGAYFNKVQCFCFTETDLKPGEKLEMPVVF 155          
BLAST of EY649930 vs. ExPASy Swiss-Prot
Match: COXZ_BRASO (Cytochrome c oxidase assembly protein ctaG OS=Bradyrhizobium sp. (strain ORS278) GN=ctaG PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 2.006e-13
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 2
Query:  467 ALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGIQWKFIPTK 688
            A+V  M+G++YAAVP Y  FC+ATG+ GT Q        +A  +       R + V+F+A+VA G+ WKF P K
Sbjct:   40 AVVVLMIGASYAAVPFYNWFCRATGFNGTTQ--------VATAAPSAAPLARRIGVRFDANVAGGLPWKFEPEK 105          

HSP 2 Score: 34.2686 bits (77), Expect = 2.006e-13
Identity = 15/39 (38.46%), Postives = 20/39 (51.28%), Query Frame = 3
Query:  771 STYNVTPMKAAVYFNKYNAFALRSSVFSP-RADDMPVFF 884
            + YNVTP+ +  YF K N F       +P    +MPV F
Sbjct:  134 AAYNVTPLTSGAYFQKINCFCFTEQTMAPGETREMPVVF 172          
BLAST of EY649930 vs. ExPASy Swiss-Prot
Match: COXZ_RICPR (Cytochrome c oxidase assembly protein ctaG OS=Rickettsia prowazekii GN=ctaG PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.027e-13
Identity = 33/88 (37.50%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  434 QKSRKMLLY-LTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGIQWKFIPTKER 694
            +KS K L + L  L+ +MV  ++A+VP+Y  FC+ TGYGGT     T++E ++ +SK     T+ ++++F+A+V   + W FIP ++R
Sbjct:    3 KKSNKNLAFSLLGLMMSMVLLSFASVPIYNLFCKVTGYGGT-----TIKETVSVYSK--VKGTKAIIIEFDANVDPNLPWHFIPRQKR 83          

HSP 2 Score: 33.4982 bits (75), Expect = 2.027e-13
Identity = 19/43 (44.19%), Postives = 21/43 (48.84%), Query Frame = 3
Query:  759 ITGVSTYNVTPMKAAVYFNKYNAFALRSSVFSPRADD-MPVFF 884
            I G S YNVTP KA  YF K + F     +   R    MPV F
Sbjct:  106 IIGTSIYNVTPNKAGKYFVKIHCFCFEEQLLKAREKVLMPVTF 148          
BLAST of EY649930 vs. ExPASy Swiss-Prot
Match: COXZ_RICCN (Cytochrome c oxidase assembly protein ctaG OS=Rickettsia conorii GN=ctaG PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.431e-13
Identity = 33/88 (37.50%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  434 QKSRKMLLY-LTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGIQWKFIPTKER 694
            +KS K L + L  L+ +MV  ++A+VP+Y  FC+ TGYGGT     T +E ++ +SK     T+ ++++F+A+V   + W+FIP ++R
Sbjct:    3 KKSNKNLAFSLLGLIISMVLLSFASVPIYNLFCKVTGYGGT-----TAKETVSVYSK--VKGTKPIIIEFDANVDKDLPWRFIPRQQR 83          

HSP 2 Score: 31.5722 bits (70), Expect = 4.431e-13
Identity = 14/32 (43.75%), Postives = 17/32 (53.12%), Query Frame = 3
Query:  753 DSITGVSTYNVTPMKAAVYFNKYNAFALRSSV 848
            + I G S YNVTP KA  YF K + F     +
Sbjct:  104 NDIIGTSVYNVTPNKAGKYFVKIHCFCFEEQL 135          
BLAST of EY649930 vs. ExPASy Swiss-Prot
Match: COXZ_BRASB (Cytochrome c oxidase assembly protein ctaG OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=ctaG PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.626e-12
Identity = 28/69 (40.58%), Postives = 40/69 (57.97%), Query Frame = 2
Query:  470 LVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGIQWKF 676
            +V  MVG++YAAVP Y  FC+ATG+ GT Q        +A  +       R + V+F+ +VA G+ WKF
Sbjct:   39 VVVLMVGASYAAVPFYNWFCRATGFNGTTQ--------VATSAPTSAPLARRIAVRFDTNVAGGLPWKF 99          

HSP 2 Score: 35.8094 bits (81), Expect = 1.626e-12
Identity = 16/39 (41.03%), Postives = 21/39 (53.85%), Query Frame = 3
Query:  771 STYNVTPMKAAVYFNKYNAFALRSSVFSP-RADDMPVFF 884
            + YNVTP+ + VYF K N F       +P    +MPV F
Sbjct:  132 AAYNVTPLTSGVYFQKINCFCFTEQTMAPGETREMPVVF 170          
BLAST of EY649930 vs. ExPASy Swiss-Prot
Match: COXZ_NITHX (Cytochrome c oxidase assembly protein ctaG OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=ctaG1 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 3.562e-12
Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 2
Query:  470 LVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGIQWKFIP 682
            LV  MVG+ YAAVP Y  FC+ATG+ GT Q        +A+ +       R V V+F+++++ G+ WKF P
Sbjct:   38 LVALMVGAAYAAVPFYNWFCRATGFNGTTQ--------VAKVAPSAAPLARTVAVRFDSNISGGLPWKFEP 100          

HSP 2 Score: 33.113 bits (74), Expect = 3.562e-12
Identity = 13/32 (40.62%), Postives = 16/32 (50.00%), Query Frame = 3
Query:  762 TGVSTYNVTPMKAAVYFNKYNAFALRSSVFSP 857
            TG + YNVTP+    YF K N F       +P
Sbjct:  128 TGQAAYNVTPLTVGSYFTKINCFCFTEQTLAP 159          
BLAST of EY649930 vs. ExPASy Swiss-Prot
Match: COXZ_BRAJA (Cytochrome c oxidase assembly protein ctaG OS=Bradyrhizobium japonicum GN=ctaG PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.219e-11
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  470 LVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGIQWKFIP 682
            +V  MVG++YAAVP Y  FC+ATG+ GT Q        +A  +       R++ V+F+++VA G+ WKF P
Sbjct:   36 VVALMVGASYAAVPFYNWFCRATGFNGTTQ--------VATAAPATGPIARKIAVRFDSNVAPGLPWKFEP 98          

HSP 2 Score: 32.3426 bits (72), Expect = 2.219e-11
Identity = 15/41 (36.59%), Postives = 19/41 (46.34%), Query Frame = 3
Query:  765 GVSTYNVTPMKAAVYFNKYNAFALRSSVFSP-RADDMPVFF 884
            G + YNV P+    YF K N F       +P    +MPV F
Sbjct:  127 GQAAYNVAPLTVGSYFQKINCFCFTEQTMAPGEKREMPVVF 167          
BLAST of EY649930 vs. ExPASy Swiss-Prot
Match: COXZ_RHOPB (Cytochrome c oxidase assembly protein ctaG OS=Rhodopseudomonas palustris (strain BisB18) GN=ctaG PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 6.317e-11
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  470 LVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGIQWKFIP 682
            +V  MVG++YAAVP Y  FC+ATG+ GT Q        +A  +       R++ V+F+++V +G+ WKF P
Sbjct:   29 VVALMVGASYAAVPFYNWFCRATGFNGTTQ--------VATAAPIAAPLPRKITVRFDSNV-NGLPWKFTP 90          

HSP 2 Score: 34.6538 bits (78), Expect = 6.317e-11
Identity = 16/42 (38.10%), Postives = 20/42 (47.62%), Query Frame = 3
Query:  762 TGVSTYNVTPMKAAVYFNKYNAFALRSSVFSP-RADDMPVFF 884
            TG + YNV P+    YF K N F      F+     +MPV F
Sbjct:  118 TGQAAYNVAPLTVGAYFQKINCFCFTEQTFAAGETREMPVVF 159          
The following BLAST results are available for this feature:
BLAST of EY649930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
COXZ_RICFE7.095e-1437.50Cytochrome c oxidase assembly protein ctaG OS=Rick... [more]
COXZ_RHIEC1.193e-1342.50Cytochrome c oxidase assembly protein ctaG OS=Rhiz... [more]
COXZ_BRASO2.006e-1341.89Cytochrome c oxidase assembly protein ctaG OS=Brad... [more]
COXZ_RICPR2.027e-1337.50Cytochrome c oxidase assembly protein ctaG OS=Rick... [more]
COXZ_RICCN4.431e-1337.50Cytochrome c oxidase assembly protein ctaG OS=Rick... [more]
COXZ_BRASB1.626e-1240.58Cytochrome c oxidase assembly protein ctaG OS=Brad... [more]
COXZ_NITHX3.562e-1240.85Cytochrome c oxidase assembly protein ctaG OS=Nitr... [more]
COXZ_BRAJA2.219e-1140.85Cytochrome c oxidase assembly protein ctaG OS=Brad... [more]
COXZ_RHOPB6.317e-1139.44Cytochrome c oxidase assembly protein ctaG OS=Rhod... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-B09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649930 ID=EY649930; Name=EY649930; organism=Citrus sinensis; type=EST; length=910bp
ACCTATTGGTNACGCCCCCAGTTCTCGGTCCGNATTCCCGCCTCGACCCC
GCGTCCGAGAAATTTGAGTCGCCGAGAGAAAAATGCGGCTGCTTCTGCAT
TTTTGCTGCTGACTTGTGGGTTAATTGTGACACCACTGCTTTCCTTTTAT
GTTTGGAAGGATGTCATTGTCAAGGCTTTCAAGTAGAACCCATATATTGC
CACTCCTACAACAGTCCATATGCGTAAAAGATGTTCTGTGGTCGAATTAT
AAGTATACCAGAGTTGATACTAGCTGCTATGCTAGTGTGTGGGGTTTAAT
GCCAAGGTGTGGATATGGCTCAAATATGACTAATGGGTATCGGAAACCTC
AGTCTTTTGGCTCTGGATGTCTTTGGAAATCCAATTCGTTTTCTAGCTTT
CAGCGTCATTATGCTTCTCATGCTTCAACAGAGCAGAAATCAAGAAAGAT
GCTTTTATACCTCACAGCATTGGTTTTTGCAATGGTTGGAAGTACTTATG
CCGCCGTACCTTTGTATAGGAGATTCTGCCAGGCTACTGGCTATGGTGGT
ACTGTTCAACGAAAAGAGACTGTTGAAGAAAAGATTGCTCGGCATTCCAA
AGATGGAACTGTCACTACAAGGGAAGTTGTTGTGCAATTCAACGCTGATG
TAGCTGATGGAATCCAATGGAAGTTTATTCCAACCAAAGAGAGGTAAGGG
TAAAGCCTGGAGAAAGCGCACTTGCATTNTACACTGCTGAGAATCGAAGT
TCGACTCCATAACTGGTGTCTCTACTTATAATGTCACCCCTATGAAGGCT
GCTGTCTACTTCAATAAATACAATGCTTTTGCTTTGAGGAGCAGCGTCTT
CTCCCCGAGAGCAGATGACATGCCTGTATTCTTTACATTGACCCTGAGTT
NGAACAATCC
back to top