EY649928

Overview
NameEY649928
Unique NameEY649928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length954
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 5.856e-29
Identity = 46/128 (35.94%), Postives = 67/128 (52.34%), Query Frame = 2 
Query:  272 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 607
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++ V+++ +G  EG R A    P     DP++P
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--GPLGEVVDPLYP 190

HSP 2 Score: 69.3218 bits (168), Expect = 5.856e-29
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP+ +L  HLADPV
Sbjct:  189 YPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 250
[Close]
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.623e-29
Identity = 46/130 (35.38%), Postives = 67/130 (51.54%), Query Frame = 2 
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNTS 616
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P  S
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVVDPLYPGGS 195

HSP 2 Score: 68.9366 bits (167), Expect = 7.623e-29
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP+ +L  HLADPV
Sbjct:  191 YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 252
[Close]
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.623e-29
Identity = 46/130 (35.38%), Postives = 67/130 (51.54%), Query Frame = 2 
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNTS 616
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P  S
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEVVDPLYPGGS 195

HSP 2 Score: 68.9366 bits (167), Expect = 7.623e-29
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP+ +L  HLADPV
Sbjct:  191 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 252
[Close]
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.624e-29
Identity = 46/130 (35.38%), Postives = 67/130 (51.54%), Query Frame = 2 
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNTS 616
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P  S
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVVDPLYPGGS 193

HSP 2 Score: 68.9366 bits (167), Expect = 7.624e-29
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP+ +L  HLADPV
Sbjct:  189 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 250
[Close]
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.624e-29
Identity = 46/130 (35.38%), Postives = 67/130 (51.54%), Query Frame = 2 
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNTS 616
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P  S
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEVVDPLYPGGS 194

HSP 2 Score: 68.9366 bits (167), Expect = 7.624e-29
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP+ +L  HLADPV
Sbjct:  190 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 251
[Close]
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.683e-28
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 2 
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRR 556
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG        L+Y  +           ++  +++ +G+ EG R
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR 175

HSP 2 Score: 68.5514 bits (166), Expect = 1.683e-28
Identity = 38/69 (55.07%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:  622 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            G D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI +L  H+ DPV
Sbjct:  184 GLDKIYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPV 250
[Close]
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.683e-28
Identity = 42/124 (33.87%), Postives = 63/124 (50.81%), Query Frame = 2 
Query:  239 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRR 556
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PE+L+K G+      W+ AG                L +      ++ V+++ +G+ EG R
Sbjct:   50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR 173

HSP 2 Score: 69.707 bits (169), Expect = 1.683e-28
Identity = 37/69 (53.62%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:  622 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            G D  YPGG  FDPLG     P+   EL+ KE+KNGRLAM ++ G + Q I TG GPI +L  H+ADPV
Sbjct:  182 GLDKVYPGGA-FDPLGLAD-DPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248
[Close]
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.683e-28
Identity = 42/124 (33.87%), Postives = 63/124 (50.81%), Query Frame = 2 
Query:  239 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRR 556
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PE+L+K G+      W+ AG                L +      ++ V+++ +G+ EG R
Sbjct:   50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR 173

HSP 2 Score: 69.707 bits (169), Expect = 1.683e-28
Identity = 37/69 (53.62%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:  622 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            G D  YPGG  FDPLG     P+   EL+ KE+KNGRLAM ++ G + Q I TG GPI +L  H+ADPV
Sbjct:  182 GLDKVYPGGA-FDPLGLAD-DPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248
[Close]
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.191e-28
Identity = 43/127 (33.86%), Postives = 62/127 (48.82%), Query Frame = 2 
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 607
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL+K G+      W+ AG                L +      ++  +++ +G  EG R      P     DP++P
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGG--GPLGEGLDPLYP 189

HSP 2 Score: 71.2478 bits (173), Expect = 2.191e-28
Identity = 39/69 (56.52%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:  622 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            G D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI +L  H+ADPV
Sbjct:  183 GLDPLYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPV 249
[Close]
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.851e-28
Identity = 46/130 (35.38%), Postives = 67/130 (51.54%), Query Frame = 2 
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNTS 616
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P  S
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEVVDPLYPGGS 195

HSP 2 Score: 67.0106 bits (162), Expect = 2.851e-28
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            YPGG  FDPLG     PE   EL+ K IKNGRLAM ++ G + Q I TG GP+ +L  HLADPV
Sbjct:  191 YPGGS-FDPLGLAE-DPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 252
The following BLAST results are available for this feature:
BLAST of EY649928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB21_ORYSJ5.856e-2935.94Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2G_SOLLC7.623e-2935.38Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB24_TOBAC7.623e-2935.38Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB2B_SOLLC7.624e-2935.38Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB21_TOBAC7.624e-2935.38Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB24_SOLLC1.683e-2836.36Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_ORYSJ1.683e-2833.87Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.683e-2833.87Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_LEMGI2.191e-2833.86Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_TOBAC2.851e-2835.38Chlorophyll a-b binding protein 50, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-B07-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649928 ID=EY649928; Name=EY649928; organism=Citrus sinensis; type=EST; length=954bp
CGGTCCTCGGTNCCGGNATTCCCGGCCTCGACCCACGCGTCCGCGGACGC
GTGGGAAAATGGCTTCCGTTTGTGCTTCCCCTGCCGTTGCAGCCATCTCA
TCCCCCAGTTCTCAGAAGAGTAGATCAGTTGCGGGAGCAACAAAGGCTTC
TTTCCTTGGTGGGAAGAAGCTGAAATTGAGAAAAAACGGAGCAACAGCGG
GAACACGATCGGTTTCAGTGAGTGCGGCTGCAGCTGATCCTAACAGGCCT
CTCTGGTTCCCAGGCAGCACTCCTCCTGAATGGCTCGATGGTAGCCTCCC
CGGAGACTTCGGCTTCGATCCTCTTGGTCTTGGATCTGATCCTGAGACGC
TGAGATGGAACGTGCAATCAGAAATTGTGCACTGCAGATGGGCAATGTTA
GGAGCTGCAGGAATTTTCATTCCGGAATTGTTAACAAAACTTGGAATCCT
CAACACTCCATCCTGGTACACAGCTGGGGAGCTAGAGTACTTCACAGACA
CCACCACCCTGTTCATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGC
AGACGGTGGGCCGACATTATAAAGCCAGGCTGTGTGAACACTGACCCGAT
CTTCCCCAACACAAGCTCACCGGCACCGATGTTGGGTACCCAGGTGGGCT
TTGGTTTGACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAAGGTAAAGG
AGCTGAGGACTAAGGAGATCAAGAATGGAAGATTGGCTATGTTGGCTGTG
ATGGGGTGCTGGTTCCAGCACATTTACACCGGCACCGGCCCCATTNGACA
TCTCATTGCTCACCTTGCTGATCCTGTCATGCCACCGTTTTTGCTGCCTC
ACCCCCAGTGAGATGATGACGAACAAGGGGAGAGAATTTGGCCAGTGGNA
GCTGAGATCAGGNAATGGTGNTCTCTTAGGGAAGGTGATGATAGAAACTG
ATTA
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