EY649928

Overview
NameEY649928
Unique NameEY649928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length954
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.388e-27
Identity = 45/130 (34.62%), Postives = 65/130 (50.00%), Query Frame = 2
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNTS 616
            P +L G  P D+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + GI      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P  S
Sbjct:   68 PSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEVIDPLYPGGS 195          

HSP 2 Score: 68.9366 bits (167), Expect = 1.388e-27
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP+ +L  HLADPV
Sbjct:  191 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 252          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.807e-27
Identity = 46/130 (35.38%), Postives = 67/130 (51.54%), Query Frame = 2
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNTS 616
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A    P     DP++P  S
Sbjct:   69 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVVDPLYPGGS 196          

HSP 2 Score: 67.0106 bits (162), Expect = 1.807e-27
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            YPGG  FDPLG     PE   EL+ KE+KNGRLAM ++ G + Q I TG GP+ +L  HL+DPV
Sbjct:  192 YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPV 253          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.808e-27
Identity = 48/141 (34.04%), Postives = 71/141 (50.35%), Query Frame = 2
Query:  239 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 607
            P+R L+       PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P
Sbjct:   52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAG--GPLGEVVDPLYP 190          

HSP 2 Score: 66.2402 bits (160), Expect = 1.808e-27
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            YPGG  FDPLG     PE   +++ KE+KNGRLAM ++ G + Q I TG GP+ +L  HLADPV
Sbjct:  189 YPGGT-FDPLGLAD-DPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 250          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.781e-27
Identity = 46/130 (35.38%), Postives = 67/130 (51.54%), Query Frame = 2
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNTS 616
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A    P     DP++P  S
Sbjct:   29 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVVDPLYPGGS 156          

HSP 2 Score: 65.0846 bits (157), Expect = 6.781e-27
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 1
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            YPGG  FDPLG     PE   EL+ KE+KNGRLAM ++ G +   I TG GP+ +L  HLADPV
Sbjct:  152 YPGGS-FDPLGLAE-VPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPV 213          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.797e-27
Identity = 43/130 (33.08%), Postives = 64/130 (49.23%), Query Frame = 2
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNTS 616
            P +L G  PGD+G+D  GL +DP T   N + E++HCRW MLGA G   PEL  + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P  S
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEVIDPLYPGGS 194          

HSP 2 Score: 68.1662 bits (165), Expect = 8.797e-27
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 1
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            YPGG  FDPLG     PE   EL  KEIKNGRLAM ++ G + Q I TG GP+ +L  HLADPV
Sbjct:  190 YPGGS-FDPLGLAD-DPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 251          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.940e-26
Identity = 50/157 (31.85%), Postives = 74/157 (47.13%), Query Frame = 2
Query:  194 TAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSW-------YTAGELEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNTS 616
            TA T+ V       D  + L       P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W       ++ G L+Y  + +         ++  +++ +G  EG R A    P     DP++P  S
Sbjct:   38 TAATKKVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEVVDPLYPGGS 192          

HSP 2 Score: 66.2402 bits (160), Expect = 1.940e-26
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            YPGG  FDPLG    + E   EL+ KEIKNGRLAM ++ G + Q I TG GP+ +L  HLADPV
Sbjct:  188 YPGGS-FDPLGLADDA-EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 249          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.523e-26
Identity = 49/139 (35.25%), Postives = 67/139 (48.20%), Query Frame = 2
Query:  239 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLF------------IVEMIFIGWAE------GRRWADIIKPG 580
            P+R ++ P      S  PE+L+G + GD+G+DP GLG  PE        E++H RWAMLGAAG  IPE L K G    P   W+  G L    +T   F            + E++ +G AE      G  + D + PG
Sbjct:   65 PDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPG 203          

HSP 2 Score: 62.003 bits (149), Expect = 2.523e-26
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 1
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADP 825
            +PGG  FDPLG     PE+   L+ KEIKNGRLAM A++G + Q   TG GP+ +L  HL+DP
Sbjct:  201 HPGGP-FDPLGLAK-DPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDP 261          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.445e-26
Identity = 54/137 (39.42%), Postives = 74/137 (54.01%), Query Frame = 2
Query:  197 AGTRSVSVSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKP 577
            A  +  +V AAAA  +   W P          PEWLDGSLPGD+GFDPLGLG DP  L+W  ++E++H RWAM    GIF+ +  + +       W+ A    G +  F+   TL   ++I +GW E +RW D   P
Sbjct:   39 ATPKRFTVLAAAAKKS---WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFS-FGTLLGTQLILMGWVESKRWVDFFDP 165          

HSP 2 Score: 41.2022 bits (95), Expect = 9.445e-26
Identity = 22/53 (41.51%), Postives = 31/53 (58.49%), Query Frame = 1
Query:  634 GYPGGLWFDPLGWGSG--------SPEKVKELRTKEIKNGRLAMLAVMGCWFQ 768
            GYPGG +FDPL               EK++ L+  EIK+ RLAMLA++  +F+
Sbjct:  191 GYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFE 243          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.711e-25
Identity = 51/126 (40.48%), Postives = 71/126 (56.35%), Query Frame = 2
Query:  218 VSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWAD 565
            V+AAA  P +  W P          PEWLDGSLPGDFGFDPLGLG DP  L+W  ++E++H RWAM    GIF+ +  + +       W+ A    G +  F+   +L   +++ +GW E +RW D
Sbjct:   44 VAAAAVAPKKS-WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVD 161          

HSP 2 Score: 40.817 bits (94), Expect = 2.711e-25
Identity = 22/53 (41.51%), Postives = 31/53 (58.49%), Query Frame = 1
Query:  634 GYPGGLWFDPLGWGSG--------SPEKVKELRTKEIKNGRLAMLAVMGCWFQ 768
            GYPGG +FDPL               EK++ L+  EIK+ RLAMLA++  +F+
Sbjct:  191 GYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFE 243          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.835e-23
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 1
Query:  625 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            TD  YPGG  FDPLG     PE + EL+ KE+KNGRLAM ++ G + Q I TG GP+ +L  HLADPV
Sbjct:  176 TDPIYPGGS-FDPLGLAD-DPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 241          

HSP 2 Score: 60.077 bits (144), Expect = 1.835e-23
Identity = 40/113 (35.40%), Postives = 56/113 (49.56%), Query Frame = 2
Query:  326 GLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNTS 616
            GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A    P    TDPI+P  S
Sbjct:   74 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVTDPIYPGGS 184          
The following BLAST results are available for this feature:
BLAST of EY649928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB23_PETSP1.388e-2734.62Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB28_PEA1.807e-2735.38Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB29_MAIZE1.808e-2734.04Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB21_PEA6.781e-2735.38Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_PETSP8.797e-2733.08Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB22_HORVU1.940e-2631.85Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB26_ARATH2.523e-2635.25Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB4A_SOLLC9.445e-2639.42Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC2.711e-2540.48Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB22_SOYBN1.835e-2355.88Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-B07-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649928 ID=EY649928; Name=EY649928; organism=Citrus sinensis; type=EST; length=954bp
CGGTCCTCGGTNCCGGNATTCCCGGCCTCGACCCACGCGTCCGCGGACGC
GTGGGAAAATGGCTTCCGTTTGTGCTTCCCCTGCCGTTGCAGCCATCTCA
TCCCCCAGTTCTCAGAAGAGTAGATCAGTTGCGGGAGCAACAAAGGCTTC
TTTCCTTGGTGGGAAGAAGCTGAAATTGAGAAAAAACGGAGCAACAGCGG
GAACACGATCGGTTTCAGTGAGTGCGGCTGCAGCTGATCCTAACAGGCCT
CTCTGGTTCCCAGGCAGCACTCCTCCTGAATGGCTCGATGGTAGCCTCCC
CGGAGACTTCGGCTTCGATCCTCTTGGTCTTGGATCTGATCCTGAGACGC
TGAGATGGAACGTGCAATCAGAAATTGTGCACTGCAGATGGGCAATGTTA
GGAGCTGCAGGAATTTTCATTCCGGAATTGTTAACAAAACTTGGAATCCT
CAACACTCCATCCTGGTACACAGCTGGGGAGCTAGAGTACTTCACAGACA
CCACCACCCTGTTCATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGC
AGACGGTGGGCCGACATTATAAAGCCAGGCTGTGTGAACACTGACCCGAT
CTTCCCCAACACAAGCTCACCGGCACCGATGTTGGGTACCCAGGTGGGCT
TTGGTTTGACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAAGGTAAAGG
AGCTGAGGACTAAGGAGATCAAGAATGGAAGATTGGCTATGTTGGCTGTG
ATGGGGTGCTGGTTCCAGCACATTTACACCGGCACCGGCCCCATTNGACA
TCTCATTGCTCACCTTGCTGATCCTGTCATGCCACCGTTTTTGCTGCCTC
ACCCCCAGTGAGATGATGACGAACAAGGGGAGAGAATTTGGCCAGTGGNA
GCTGAGATCAGGNAATGGTGNTCTCTTAGGGAAGGTGATGATAGAAACTG
ATTA
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