EY649928

Overview
NameEY649928
Unique NameEY649928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length954
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.252e-11
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  269 TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG 478
            +PP +L G  PGD+G+D  GL +DPET   N + E++HCRWA+    G   PELL + G+      W+ AG
Sbjct:   63 SPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAG 133          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.135e-11
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 2
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK-LGI-LNTPSWYTAG 478
            P +L+G  PGD+G+D  GL +DPE    N   E++H RWAMLGA G   PE+L K +G+    P W+ AG
Sbjct:   67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAG 136          

HSP 2 Score: 70.0922 bits (170), Expect = 2.146e-11
Identity = 37/69 (53.62%), Postives = 45/69 (65.22%), Query Frame = 1
Query:  622 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            G D+ YPGG +FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP+ +L  HL DPV
Sbjct:  187 GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPV 253          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.643e-11
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 2
Query:  275 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAGELEYFTD 499
            P +L+G  PGD+G+D  GL +DPE    N   E++H RWAMLGA G   PE+L K   ++   P W+ AG  + F+D
Sbjct:   64 PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGS-QIFSD 139          

HSP 2 Score: 69.3218 bits (168), Expect = 3.661e-11
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 1
Query:  622 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            G D+ YPGG +FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP+ +L+ HL +PV
Sbjct:  184 GNDL-YPGGQYFDPLGLAD-DPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPV 250          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.781e-11
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP+ +L  HLADPV
Sbjct:   40 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 101          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.781e-11
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP+ +L  HLADPV
Sbjct:  189 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 250          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.781e-11
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP+ +L  HLADPV
Sbjct:  189 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 250          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.781e-11
Identity = 39/69 (56.52%), Postives = 44/69 (63.77%), Query Frame = 1
Query:  622 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            G D  YPG   FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI +L  HLADPV
Sbjct:   69 GLDPLYPGDA-FDPLGLAD-DPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 135          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.155e-11
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP+ +L  H+ADPV
Sbjct:  191 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPV 252          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.155e-11
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP+ +L  H+ADPV
Sbjct:  191 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPV 252          
The following BLAST results are available for this feature:
BLAST of EY649928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB48_MAIZE1.252e-1143.66Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB23_HORVU2.135e-1147.14Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_SOLLC3.643e-1144.16Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2D_SOLLC4.781e-1157.81Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC4.781e-1157.81Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC4.781e-1157.81Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB22_PINSY4.781e-1156.52Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB2F_SOLLC8.155e-1156.25Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC8.155e-1156.25Chlorophyll a-b binding protein 3A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-B07-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649928 ID=EY649928; Name=EY649928; organism=Citrus sinensis; type=EST; length=954bp
CGGTCCTCGGTNCCGGNATTCCCGGCCTCGACCCACGCGTCCGCGGACGC
GTGGGAAAATGGCTTCCGTTTGTGCTTCCCCTGCCGTTGCAGCCATCTCA
TCCCCCAGTTCTCAGAAGAGTAGATCAGTTGCGGGAGCAACAAAGGCTTC
TTTCCTTGGTGGGAAGAAGCTGAAATTGAGAAAAAACGGAGCAACAGCGG
GAACACGATCGGTTTCAGTGAGTGCGGCTGCAGCTGATCCTAACAGGCCT
CTCTGGTTCCCAGGCAGCACTCCTCCTGAATGGCTCGATGGTAGCCTCCC
CGGAGACTTCGGCTTCGATCCTCTTGGTCTTGGATCTGATCCTGAGACGC
TGAGATGGAACGTGCAATCAGAAATTGTGCACTGCAGATGGGCAATGTTA
GGAGCTGCAGGAATTTTCATTCCGGAATTGTTAACAAAACTTGGAATCCT
CAACACTCCATCCTGGTACACAGCTGGGGAGCTAGAGTACTTCACAGACA
CCACCACCCTGTTCATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGC
AGACGGTGGGCCGACATTATAAAGCCAGGCTGTGTGAACACTGACCCGAT
CTTCCCCAACACAAGCTCACCGGCACCGATGTTGGGTACCCAGGTGGGCT
TTGGTTTGACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAAGGTAAAGG
AGCTGAGGACTAAGGAGATCAAGAATGGAAGATTGGCTATGTTGGCTGTG
ATGGGGTGCTGGTTCCAGCACATTTACACCGGCACCGGCCCCATTNGACA
TCTCATTGCTCACCTTGCTGATCCTGTCATGCCACCGTTTTTGCTGCCTC
ACCCCCAGTGAGATGATGACGAACAAGGGGAGAGAATTTGGCCAGTGGNA
GCTGAGATCAGGNAATGGTGNTCTCTTAGGGAAGGTGATGATAGAAACTG
ATTA
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