EY649926

Overview
NameEY649926
Unique NameEY649926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length974
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.579e-20
Identity = 75/208 (36.06%), Postives = 104/208 (50.00%), Query Frame = 1
Query:  235 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            G DR  +    S Q+ SYL+G  PGDYG+D  GLS DPE    F + + L   EVI+GR+AMLGA+G I PE+L K   +  +  + WF+ G  I   G  +Y  +P  +           ++ LMG  E  R      PG               G G+  YPG   F+PLGL  D  +  + K+KE+KNGRL M  ++G+  +  V
Sbjct:   49 GPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPV-WFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIV 233          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.688e-19
Identity = 78/225 (34.67%), Postives = 110/225 (48.89%), Query Frame = 1
Query:  184 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            RK +   + AS+     G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPG   F+PLGL  D ++  + K+KE+KNGRL M  ++G+  +  V
Sbjct:   37 RKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FSKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP----------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 236          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.688e-19
Identity = 78/228 (34.21%), Postives = 110/228 (48.25%), Query Frame = 1
Query:  202 VRAASTPPVKQGADRPLWFA----------SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            + AA+   +  G D  LW+           S Q+ SYL+G  PGDYG+D  GLS DPE    F   + L   EVI+GR+AMLGA+G + PE+L K  G+  +E    WF+ G  I   G  +Y  +P  +           ++ LMG  E  R                G +    G G+  YPG   F+PLGL  D  +  + K+KE+KNGRL M  ++G+  +  V
Sbjct:   35 IAAATNGRITMGND--LWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.688e-19
Identity = 78/225 (34.67%), Postives = 110/225 (48.89%), Query Frame = 1
Query:  184 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            RK +   + AS+     G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPG   F+PLGL  D ++  + K+KE+KNGRL M  ++G+  +  V
Sbjct:   38 RKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FSKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP----------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 237          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.205e-19
Identity = 78/217 (35.94%), Postives = 107/217 (49.31%), Query Frame = 1
Query:  208 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            AAS+     G DR L+    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPG   F+PLGL  D ++  D K+KE+KNGRL M  ++G+  +  V
Sbjct:   42 AASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGP----------------LGEVVDPLYPGGT-FDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIV 233          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.880e-19
Identity = 78/225 (34.67%), Postives = 110/225 (48.89%), Query Frame = 1
Query:  184 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            RK +   + AS+     G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPG   F+PLGL  D ++  + K+KE+KNGRL M  ++G+  +  V
Sbjct:   36 RKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 235          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.880e-19
Identity = 76/208 (36.54%), Postives = 103/208 (49.52%), Query Frame = 1
Query:  235 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   D  YPG   F+PLGL  D ++  + K+KE+KNGRL M  ++G+  +  V
Sbjct:   51 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGP----------------LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 233          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.880e-19
Identity = 75/208 (36.06%), Postives = 103/208 (49.52%), Query Frame = 1
Query:  235 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+GR+AMLGA+G + PE+L + G+   E    WF+ G  I   G   Y  +P          ++  ++ LMG  E  R                     LG   DP YPG   F+PLGL  D ++  + K+KE+KNGRL M  ++G+  +  V
Sbjct:   50 GPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHGRWAMLGALGCVFPELLARNGVKFGEAV--WFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVVDPLYPGGS-FDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 232          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.761e-19
Identity = 76/220 (34.55%), Postives = 109/220 (49.55%), Query Frame = 1
Query:  199 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            V ++A +     G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPG   F+PLGL +D ++  + K+KE+KNGRL M  ++G+  +  V
Sbjct:   39 VAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 233          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.912e-19
Identity = 77/217 (35.48%), Postives = 104/217 (47.93%), Query Frame = 1
Query:  208 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            AAS      G DR ++    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y   P          ++  ++ LMG  E  R                     LG   DP YPG   F+PLGL  D  +  D K+KE+KNGRL M  ++G+  +  V
Sbjct:   55 AASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP----------------LGEVTDPIYPGGN-FDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIV 246          
The following BLAST results are available for this feature:
BLAST of EY649926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB23_SOLLC7.579e-2036.06Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB28_PEA1.688e-1934.67Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_HORVU1.688e-1934.21Chlorophyll a-b binding protein of LHCII type III,... [more]
CB22_PEA1.688e-1934.67Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB29_MAIZE2.205e-1935.94Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB2G_SOLLC2.880e-1934.67Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB23_TOBAC2.880e-1936.54Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB22_HORVU2.880e-1936.06Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2B_SOLLC3.761e-1934.55Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_PYRPY4.912e-1935.48Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-B05-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649926 ID=EY649926; Name=EY649926; organism=Citrus sinensis; type=EST; length=974bp
ATTGGTNACGCCTGCCAGTTCTGGTCCGGNATTCCCGGCTCGACCCCGCG
TCCGANAAACAGAGGAAAAAAGAAATTAAAAATGGCAACCCAAGCTTTGG
TTTCATCATCTCTTACATCTTCAGTGGAGACTGCGAGACAAATTCTTGGA
GCAAGATCAGCTCAATCCCCAACTGGGTCATCAAGAAAAGGTTCCTTTGT
TGTTAGGGCAGCTTCTACTCCTCCTGTTAAGCAAGGAGCAGACAGACCGT
TGTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGCAGCCTCCCC
GGAGACTATGGATTCGACCCACTTGGTCTCTCAGACCCTGAAGGCACAGG
AGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCGAGGTCATCAACGGTC
GTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCACCGGAGATTCTTGGC
AAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGCCTGGTTCCAAACCGG
TGTGATCCCCCCAGCGGGAACATACAACTACTGGGCAGACCCTTACACAC
TTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCGAGCACCGGAGATTC
CAAGACTGGGCAAATCCAGGATCAATGGGCAGGCAATACTTCCTCGGATT
CGAGAAATACTTGGGAGGATCCGGCGATCCGGCTTACCCTGGGAGACCTC
TATTCAACCCTCTGGGTCTTGGGAAAGATGAGAAGTCAATGAAGGATTTC
AAGCTCAAGGAAGTGAAGAATGGAAGATTGGGCATGGTGGGCATCTGGGG
GTACTTGNTCAAGGTCNNTGTACAGGAGTGGGCCNTACCCAGACCTATGG
GATCACTGGNCTGATCCTGTAAACACAATGGNTTGACTAGCCTCAAGTTC
ACTGAAAGAGAATTTTCTGGTCATGGCTGGGATNATTATNCCAGGCCTGN
ATCCCCACTCTGTCTATCTACTTT
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